Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 1.3e-89 333.2 192 100.0
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 8.7e-89 330.5 192 96.4
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 9.6e-88 327.0 192 95.3
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 4.0e-86 321.6 192 87.0
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 3.4e-85 318.5 198 91.9
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 1.4e-83 313.2 180 92.2
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 1.1e-75 287.0 174 89.1
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 4.3e-72 275.0 180 81.1
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 2.1e-71 272.7 178 81.5
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 1.4e-70 270.0 181 80.7
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 3.4e-69 265.4 174 81.0
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 8.2e-55 217.6 141 80.9
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 7.7e-53 211.1 175 68.0
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 5.0e-52 208.4 141 77.3
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 1.9e-51 206.5 141 78.0
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 2.2e-47 193.0 118 83.1
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.2e-47 193.0 184 58.2
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 4.8e-47 191.8 132 74.2
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 6.3e-47 191.4 164 64.0
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 6.3e-47 191.4 184 58.2
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 6.3e-47 191.4 178 62.4
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 8.2e-47 191.0 168 62.5
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 8.2e-47 191.0 184 58.2
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.1e-46 190.7 114 81.6
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.1e-46 190.7 114 81.6
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 1.8e-46 189.9 118 83.9
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.4e-46 189.5 132 73.5
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 2.4e-46 189.5 109 86.2
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 2.4e-46 189.5 103 90.3
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 2.4e-46 189.5 122 81.1
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 3.1e-46 189.1 121 77.7
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 3.1e-46 189.1 168 63.1
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 4.1e-46 188.7 162 67.3
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 5.3e-46 188.3 168 62.5
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 7.0e-46 188.0 150 68.0
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 7.0e-46 188.0 103 89.3
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 9.1e-46 187.6 112 81.2
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 1.2e-45 187.2 116 81.0
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 1.2e-45 187.2 113 82.3
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 1.5e-45 186.8 166 63.9
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 2.0e-45 186.4 153 67.3
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 2.0e-45 186.4 156 64.1
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 2.0e-45 186.4 120 80.0
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 2.6e-45 186.0 174 63.2
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 4.5e-45 185.3 168 59.5
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 4.5e-45 185.3 102 87.3
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 5.9e-45 184.9 182 57.7
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 1.0e-44 184.1 157 67.5
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 1.0e-44 184.1 167 65.3
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 1.3e-44 183.7 169 61.5
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 1.3e-44 183.7 109 85.3
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 1.7e-44 183.3 110 82.7
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 2.2e-44 183.0 119 80.7
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 2.2e-44 183.0 120 80.8
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 2.9e-44 182.6 118 80.5
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 2.9e-44 182.6 177 60.5
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 3.8e-44 182.2 110 84.5
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 3.8e-44 182.2 110 84.5
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 3.8e-44 182.2 114 83.3
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 5.0e-44 181.8 138 69.6
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 5.0e-44 181.8 146 67.8
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 6.5e-44 181.4 103 86.4
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 6.5e-44 181.4 103 86.4
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 6.5e-44 181.4 115 81.7
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 6.5e-44 181.4 115 81.7
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 6.5e-44 181.4 177 58.8
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 1.1e-43 180.6 135 70.4
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 1.1e-43 180.6 140 70.0
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 1.1e-43 180.6 110 83.6
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 1.1e-43 180.6 127 73.2
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 1.4e-43 180.3 109 81.7
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 1.9e-43 179.9 118 78.0
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 5.5e-43 178.3 113 81.4
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 7.2e-43 177.9 108 80.6
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 7.2e-43 177.9 131 71.8
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 7.2e-43 177.9 106 84.0
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 9.4e-43 177.6 120 76.7
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 9.4e-43 177.6 107 81.3
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 1.2e-42 177.2 115 76.5
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.2e-42 177.2 171 60.2
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 1.6e-42 176.8 164 61.6
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 1.6e-42 176.8 136 67.6
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 2.1e-42 176.4 104 85.6
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 2.1e-42 176.4 107 82.2
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 1.0e-41 174.1 107 81.3
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 1.4e-41 173.7 178 58.4
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 2.3e-41 172.9 153 62.7
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 2.3e-41 172.9 107 80.4
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 3.9e-41 172.2 112 78.6
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 3.9e-41 172.2 107 80.4
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 5.2e-41 171.8 103 85.4
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 5.2e-41 171.8 177 58.2
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 6.7e-41 171.4 103 84.5
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 1.1e-40 170.6 131 68.7
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 3.3e-40 169.1 118 73.7
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 4.4e-40 168.7 105 79.0
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 5.7e-40 168.3 108 76.9
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 5.7e-40 168.3 109 77.1
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 7.4e-40 167.9 111 75.7
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 6.3e-39 164.9 106 77.4
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 8.2e-39 164.5 102 81.4
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 1.8e-38 163.3 83 97.6
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 1.2e-37 160.6 135 63.7
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 1.6e-37 160.2 109 75.2
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 7.7e-37 157.9 126 66.7
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 1.5e-32 143.7 165 50.9
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 2.6e-32 142.9 112 70.5
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 7.5e-32 141.4 131 58.8
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 1.7e-31 140.2 108 65.7
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 7.7e-29 131.3 101 72.3
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 1.0e-28 131.0 74 86.5
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 1.0e-25 120.9 71 85.9
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 6.8e-25 118.2 129 52.7
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 2.6e-24 116.3 104 64.4
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 5.7e-24 115.2 127 54.3
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 7.5e-24 114.8 68 82.4
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 3.7e-23 112.5 65 80.0
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 7.0e-22 108.2 109 56.9
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 1.0e-20 104.4 69 73.9
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 5.5e-19 98.6 74 68.9
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 2.4e-14 83.2 97 51.5
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 3.1e-14 82.8 111 47.7
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 4.1e-14 82.4 44 88.6
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 5.4e-14 82.0 46 84.8
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 7.8e-13 78.2 48 75.0
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 1.0e-12 77.8 60 70.0
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 5.6e-11 72.0 98 43.9
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 6.1e-10 68.6 61 62.3
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 2.3e-09 66.6 113 38.1


User provided reference genes

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