Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22619 Brassica carinata HOM05D010600 ORTHO05D007875 8.7e-57 223.4 112 100.0
C09p17280 Brassica napus HOM05D010600 ORTHO05D007875 3.7e-55 218.0 112 98.2
BolC9t54630H Brassica oleracea HOM05D010600 ORTHO05D007875 3.7e-55 218.0 112 98.2
A09p14360 Brassica napus HOM05D010600 ORTHO05D007875 4.0e-54 214.5 114 96.5
BraA09t37083Z Brassica rapa HOM05D010600 ORTHO05D007875 4.0e-54 214.5 114 96.5
BcaB07g31500 Brassica carinata HOM05D010600 ORTHO05D007875 6.5e-52 207.2 112 92.9
Thhalv10023875m.g Eutrema salsugineum HOM05D010600 ORTHO05D007875 4.2e-43 177.9 118 80.5
AT1G64405 Arabidopsis thaliana HOM05D010600 ORTHO05D007875 8.7e-41 170.2 119 78.2
BcaB07g31463 Brassica carinata HOM05D010600 ORTHO05D007875 8.7e-41 170.2 116 77.6
AL2G10440 Arabidopsis lyrata HOM05D010600 ORTHO05D007875 5.7e-40 167.5 115 77.4
Sp2g00320 Schrenkiella parvula HOM05D010600 ORTHO05D007875 1.1e-38 163.3 114 76.3
BcaC04g22568 Brassica carinata HOM05D010600 ORTHO05D007875 1.7e-36 156.0 120 73.3
C09p17810 Brassica napus HOM05D010600 ORTHO05D007875 1.9e-35 152.5 121 73.6
BolC9t54679H Brassica oleracea HOM05D010600 ORTHO05D007875 1.9e-35 152.5 121 73.6
Carub.0002s0036 Capsella rubella HOM05D010600 ORTHO05D007875 2.1e-34 149.1 119 69.7
CARHR046510 Cardamine hirsuta HOM05D010600 ORTHO05D007875 7.9e-34 147.1 118 67.8
Aa31LG2G1420 Aethionema arabicum HOM05D010600 ORTHO05D007875 1.1e-32 143.3 119 67.2
A09p14720 Brassica napus HOM05D010600 ORTHO05D007875 1.9e-27 125.9 119 61.3
BraA09t37118Z Brassica rapa HOM05D010600 ORTHO05D007875 1.9e-27 125.9 119 61.3
THA.LOC104817601 Tarenaya hassleriana HOM05D010600 ORTHO05D007875 1.8e-22 109.4 112 58.0
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 2.2e-12 75.9 110 47.3
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 6.5e-12 74.3 115 40.0
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 1.1e-11 73.6 119 42.9
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.1e-11 73.6 110 46.4
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 1.5e-11 73.2 118 42.4
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.5e-11 73.2 115 40.0
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 1.6e-10 69.7 111 41.4
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 1.6e-10 69.7 118 36.4
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 2.7e-10 68.9 115 41.7
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 2.7e-10 68.9 109 37.6
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 3.6e-10 68.6 112 40.2
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 4.7e-10 68.2 112 40.2
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 6.1e-10 67.8 112 42.0
Duzib068G0682 Durio zibethinus HOM05D007590 ORTHO05D007875 6.1e-10 67.8 117 40.2
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 1.4e-09 66.6 113 42.5
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 2.3e-09 65.9 112 39.3
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 6.8e-09 64.3 115 39.1
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 6.8e-09 64.3 119 37.0
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 1.5e-08 63.2 121 34.7
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 2.0e-08 62.8 112 40.2
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 2.6e-08 62.4 119 37.8
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 9.8e-08 60.5 122 36.1
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 9.8e-08 60.5 109 38.5
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 1.3e-07 60.1 116 36.2
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 1.3e-07 60.1 113 35.4
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 1.7e-07 59.7 109 39.4
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 1.7e-07 59.7 109 37.6
Ah.12g052560 Amaranthus hybridus HOM05D007590 ORTHO05D007875 2.8e-07 58.9 123 31.7
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 3.7e-07 58.5 121 37.2
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 3.7e-07 58.5 120 34.2
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 3.7e-07 58.5 109 36.7
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 3.7e-07 58.5 113 35.4
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 4.8e-07 58.2 115 39.1
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 6.3e-07 57.8 116 33.6
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 6.3e-07 57.8 112 33.9
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 8.3e-07 57.4 126 37.3
Duzib068G0902 Durio zibethinus HOM05D007590 ORTHO05D007875 8.3e-07 57.4 113 39.8
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 8.3e-07 57.4 114 38.6
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 1.4e-06 56.6 117 34.2
MSTRG.11924 Avicennia marina HOM05D007590 ORTHO05D007875 2.4e-06 55.8 109 31.2
CDE10G0175 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 2.4e-06 55.8 111 34.2
Ciclev10022592m.g Citrus clementina HOM05D007590 ORTHO05D007875 2.4e-06 55.8 113 35.4
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 2.4e-06 55.8 116 33.6
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 2.4e-06 55.8 108 35.2
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 2.4e-06 55.8 108 35.2
Glyma.11G017400 Glycine max HOM05D007590 ORTHO05D007875 3.1e-06 55.5 110 31.8
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 3.1e-06 55.5 108 36.1
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 3.1e-06 55.5 110 35.5
CiPaw.12G082700 Carya illinoinensis HOM05D007590 ORTHO05D007875 4.1e-06 55.1 113 36.3
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 5.4e-06 54.7 112 40.2
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 5.4e-06 54.7 113 37.2
TWI60G0225 Tripterygium wilfordii HOM05D007590 ORTHO05D007875 5.4e-06 54.7 115 32.2
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 7.0e-06 54.3 115 33.9
CDE10G0927 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 9.1e-06 53.9 105 36.2


User provided reference genes

Program Settings