Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 7.7e-312 1073.2 563 100.0
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 1.4e-304 1048.9 549 100.0
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 4.1e-304 1047.3 548 99.8
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 1.1e-301 1039.3 552 98.4
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 9.4e-301 1036.2 556 97.7
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 1.0e-291 1006.1 552 95.7
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 6.5e-278 960.3 550 91.3
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 4.7e-260 901.0 566 84.1
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 1.8e-259 899.0 549 86.5
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 7.5e-258 893.6 548 85.8
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 1.1e-256 889.8 594 79.6
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 9.5e-245 850.1 567 78.7
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 7.1e-224 780.8 535 72.9
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 1.8e-190 669.8 517 64.2
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 3.9e-190 668.7 517 64.0
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 5.7e-189 664.8 517 66.3
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 5.7e-189 664.8 518 67.2
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 4.8e-188 661.8 517 63.6
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 1.8e-187 659.8 516 68.0
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 2.2e-185 652.9 515 63.7
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 3.0e-182 642.5 515 62.1
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 6.7e-182 641.3 515 65.0
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 2.0e-181 639.8 517 62.7
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 2.2e-180 636.3 521 61.8
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 3.7e-180 635.6 515 63.1
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 6.3e-180 634.8 513 63.2
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 6.3e-180 634.8 517 64.2
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 6.3e-180 634.8 517 60.7
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 8.2e-180 634.4 521 63.5
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 8.2e-180 634.4 517 62.5
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 1.1e-179 634.0 515 63.3
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 1.4e-179 633.6 520 67.5
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 1.2e-178 630.6 517 60.2
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 1.6e-178 630.2 521 61.2
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 3.5e-178 629.0 528 60.0
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 1.0e-177 627.5 521 61.4
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 2.9e-177 625.9 524 61.1
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 6.5e-177 624.8 524 60.1
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 1.5e-176 623.6 518 65.1
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 4.2e-176 622.1 512 62.5
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 9.4e-176 620.9 511 61.3
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 9.4e-176 620.9 521 63.3
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 1.2e-175 620.5 504 63.1
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 2.1e-175 619.8 519 60.5
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 2.7e-175 619.4 518 59.3
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 2.7e-175 619.4 521 64.3
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 3.6e-175 619.0 518 61.2
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 6.1e-175 618.2 518 60.2
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 1.8e-174 616.7 521 61.0
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 2.3e-174 616.3 514 61.1
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 5.2e-174 615.1 518 61.0
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 8.8e-174 614.4 518 59.1
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 9.7e-173 610.9 514 61.9
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 2.8e-172 609.4 526 60.5
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 4.8e-172 608.6 521 60.8
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 4.8e-172 608.6 523 59.3
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.4e-171 606.3 521 61.4
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 4.1e-171 605.5 521 61.4
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.2e-170 604.0 521 61.2
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 1.0e-169 600.9 516 58.3
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 2.2e-169 599.7 522 60.2
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 3.8e-169 599.0 573 55.7
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 6.5e-169 598.2 521 60.3
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 1.5e-168 597.0 516 58.5
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 1.2e-167 594.0 521 57.2
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 2.1e-167 593.2 525 58.3
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 8.8e-166 587.8 525 56.4
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.5e-165 587.0 539 57.3
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.6e-165 586.3 529 57.5
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 1.7e-164 583.6 516 57.0
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 2.0e-162 576.6 519 57.4
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 4.5e-162 575.5 601 54.7
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 6.6e-161 571.6 516 59.5
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 2.5e-160 569.7 531 60.1
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 1.6e-159 567.0 533 55.9
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 1.7e-156 557.0 559 53.3
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 1.1e-155 554.3 526 54.2
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 4.1e-155 552.4 549 56.5
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 1.6e-154 550.4 391 68.5
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 1.6e-154 550.4 522 52.9
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 2.8e-151 539.7 508 53.9
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 2.0e-146 523.5 516 52.5
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 2.7e-146 523.1 478 56.7
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 1.0e-145 521.2 479 58.7
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 8.9e-142 508.1 475 57.1
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 1.2e-141 507.7 553 52.4
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 3.7e-140 502.7 362 68.0
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 3.6e-135 486.1 403 60.8
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 2.0e-133 480.3 525 48.2
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 8.3e-132 474.9 352 66.2
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 1.6e-114 417.5 270 84.1
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 8.1e-111 405.2 377 57.0
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 4.3e-104 382.9 514 46.9
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 4.8e-103 379.4 520 45.2
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 7.6e-101 372.1 539 38.8
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 7.9e-98 362.1 277 65.0
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 1.3e-97 361.3 529 39.1
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 5.5e-91 339.3 565 37.9
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 7.9e-90 335.5 585 38.5
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.5e-80 304.7 497 38.0
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 2.0e-80 304.3 251 59.8
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 9.7e-80 302.0 251 60.2
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 3.4e-77 293.5 269 55.0
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 6.7e-65 252.7 214 61.2
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 3.3e-64 250.4 267 45.3
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 5.7e-64 249.6 245 56.7
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 1.8e-62 244.6 185 65.9
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 5.9e-61 239.6 474 37.1
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 1.4e-57 228.4 220 56.4
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 2.2e-52 211.1 504 28.0
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 8.5e-52 209.1 251 43.8
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 5.5e-51 206.5 219 52.5
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 1.4e-38 165.2 190 46.3
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 4.1e-38 163.7 301 37.5
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 7.0e-38 162.9 180 52.2
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 7.8e-37 159.5 163 48.5
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 1.1e-35 155.6 256 40.6
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 1.0e-33 149.1 513 29.2
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 6.4e-31 139.8 264 37.5
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 9.2e-30 136.0 80 78.8
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 2.2e-23 114.8 162 40.7
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 3.5e-21 107.5 66 66.7
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 3.6e-18 97.4 67 58.2
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 4.4e-16 90.5 121 43.8
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 9.9e-16 89.4 134 41.8
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 3.7e-15 87.4 109 43.1
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 2.4e-14 84.7 179 34.6
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 4.3e-11 73.9 52 59.6
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 7.1e-06 56.6 36 69.4


User provided reference genes

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