Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 0.0e+00 1129.0 570 100.0
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 3.9e-230 801.6 514 83.5
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 8.8e-230 800.4 514 83.3
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 4.0e-222 775.0 515 81.0
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 6.7e-222 774.2 446 90.4
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 8.1e-183 644.4 467 74.9
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 2.1e-178 629.8 365 92.3
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 1.7e-169 600.1 473 71.9
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 9.0e-158 561.2 482 68.3
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 1.2e-149 534.3 482 65.1
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 8.4e-148 528.1 480 65.4
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 6.9e-142 508.4 477 63.1
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 2.6e-109 400.2 435 54.9
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 1.8e-86 324.3 488 46.5
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 3.2e-54 217.2 529 35.3
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 1.7e-52 211.5 523 35.0
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 1.2e-48 198.7 521 33.4
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.0e-48 198.0 513 35.7
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 9.9e-48 195.7 509 34.0
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 1.7e-47 194.9 521 33.2
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 2.2e-47 194.5 509 33.2
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 3.8e-47 193.7 509 33.0
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 7.1e-46 189.5 526 34.2
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 1.3e-44 185.3 499 33.5
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 4.0e-41 173.7 479 33.8
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.8e-40 169.9 494 33.4
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 9.9e-40 169.1 464 34.1
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 1.7e-39 168.3 530 30.8
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 1.7e-39 168.3 525 32.4
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 3.8e-39 167.2 495 33.9
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.9e-39 166.8 504 34.5
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 1.1e-38 165.6 530 33.2
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 2.4e-38 164.5 555 29.9
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 3.2e-38 164.1 530 33.0
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 9.3e-38 162.5 545 32.1
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 1.6e-37 161.8 514 32.5
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 6.0e-37 159.8 513 30.6
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 7.9e-37 159.5 458 32.5
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 7.9e-37 159.5 543 32.4
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 1.8e-36 158.3 490 31.8
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 3.0e-36 157.5 499 30.1
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 3.9e-36 157.1 503 32.2
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 5.1e-36 156.8 541 30.1
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 6.7e-36 156.4 500 31.8
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 6.7e-36 156.4 502 31.5
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 8.7e-36 156.0 535 30.3
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 1.1e-35 155.6 509 31.8
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 2.5e-35 154.5 475 33.3
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 3.3e-35 154.1 415 31.8
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 3.3e-35 154.1 468 32.9
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 4.3e-35 153.7 486 32.3
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 5.6e-35 153.3 474 33.1
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 7.4e-35 152.9 539 29.3
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 1.3e-34 152.1 466 32.0
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 1.6e-34 151.8 547 29.1
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.1e-34 151.4 498 31.3
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 2.8e-34 151.0 492 32.1
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 3.7e-34 150.6 507 31.6
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 4.8e-34 150.2 211 49.8
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 8.1e-34 149.4 534 29.4
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 8.1e-34 149.4 497 32.2
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 1.4e-33 148.7 489 31.7
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 2.4e-33 147.9 516 29.1
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 3.1e-33 147.5 514 30.0
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 3.1e-33 147.5 506 31.6
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 5.3e-33 146.7 504 31.3
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 9.0e-33 146.0 501 30.5
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 1.2e-32 145.6 525 29.3
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 1.2e-32 145.6 483 31.5
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 2.6e-32 144.4 503 29.6
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 1.7e-31 141.7 503 31.2
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 2.2e-31 141.4 503 31.2
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 6.4e-31 139.8 498 30.9
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 1.9e-30 138.3 444 30.9
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 5.5e-30 136.7 488 28.9
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 5.5e-30 136.7 531 30.7
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 2.7e-29 134.4 525 29.1
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 1.8e-28 131.7 219 43.8
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 3.0e-28 131.0 439 32.3
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 3.9e-28 130.6 448 31.5
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 6.7e-28 129.8 510 28.6
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 1.5e-27 128.6 494 29.4
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 3.3e-27 127.5 456 30.0
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 5.6e-27 126.7 415 29.4
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 5.6e-27 126.7 268 37.3
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 1.6e-26 125.2 508 28.1
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 1.1e-25 122.5 509 28.9
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.1e-25 122.5 453 28.5
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 1.1e-25 122.5 479 31.1
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 2.4e-25 121.3 489 29.7
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 2.0e-24 118.2 534 28.5
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.4e-24 117.5 465 29.2
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 3.8e-23 114.0 508 28.5
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 8.4e-23 112.8 621 26.9
BcaB01g03945 Brassica carinata HOM05D002890 ORTHO05D005855 1.1e-22 112.5 296 35.5
BcaC01g05871 Brassica carinata HOM05D002890 ORTHO05D005855 1.1e-22 112.5 296 35.5
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 2.5e-22 111.3 513 28.1
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 4.2e-22 110.5 527 26.0
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 7.1e-22 109.8 416 28.6
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 1.0e-20 105.9 498 27.5
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 1.8e-20 105.1 438 29.2
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 6.7e-20 103.2 552 26.4
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 1.1e-19 102.4 439 29.2
BraA09t37107Z Brassica rapa HOM05D000681 ORTHO05D007906 5.7e-19 100.1 264 35.6
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 1.6e-18 98.6 463 27.9
BcaB07g31474 Brassica carinata HOM05D000681 ORTHO05D007906 1.5e-16 92.0 264 34.1
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 4.5e-16 90.5 295 33.6
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 1.3e-15 89.0 397 28.7
A09p14590 Brassica napus HOM05D000681 ORTHO05D007906 2.2e-15 88.2 304 32.9
Aa31LG2G1560 Aethionema arabicum HOM05D000681 ORTHO05D007906 5.0e-15 87.0 298 32.6
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 5.0e-15 87.0 429 26.8
AL2G10220 Arabidopsis lyrata HOM05D000681 ORTHO05D007906 1.1e-14 85.9 298 32.6
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 1.4e-14 85.5 523 26.2
Carub.0002s0020 Capsella rubella HOM05D000681 ORTHO05D007906 1.4e-14 85.5 298 32.6
AT1G64550 Arabidopsis thaliana HOM05D000681 ORTHO05D007906 1.9e-14 85.1 298 32.6
Thhalv10023304m.g Eutrema salsugineum HOM05D000681 ORTHO05D007906 2.5e-14 84.7 301 32.6
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.5e-14 84.7 155 38.7
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 4.2e-14 84.0 432 28.5
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 3.6e-13 80.9 487 25.7
C09p17670 Brassica napus HOM05D000681 ORTHO05D007906 6.1e-13 80.1 104 54.8
BolC9t54661H Brassica oleracea HOM05D000681 ORTHO05D007906 6.1e-13 80.1 104 54.8
CARHR046390 Cardamine hirsuta HOM05D000681 ORTHO05D007906 1.8e-12 78.6 301 31.9
Sp2g00200 Schrenkiella parvula HOM05D000681 ORTHO05D007906 1.8e-12 78.6 301 32.6
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 6.7e-12 76.6 444 27.0
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 8.8e-12 76.3 449 26.5
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 8.8e-12 76.3 145 37.2
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 1.9e-11 75.1 368 29.6
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 3.4e-08 64.3 410 26.1
BolC9t54659H Brassica oleracea HOM05D002890 ORTHO05D005855 5.9e-08 63.5 30 100.0
Sabra01G0063600 Salix brachista HOM05D000681 ORTHO05D007906 2.2e-07 61.6 48 68.8
Lsat_1_v5_gn_6_8920 Lactuca sativa HOM05D000681 ORTHO05D007906 1.1e-06 59.3 257 27.6
SHI02204 Sapria himalayana HOM05D002890 ORTHO05D005855 2.5e-06 58.2 232 25.4
VMungo0540G0066 Vigna mungo HOM05D000681 ORTHO05D007906 2.5e-06 58.2 269 28.6
arahy.Tifrunner.gnm1.ann1.3Z5EIP Arachis hypogaea HOM05D000681 ORTHO05D007906 5.5e-06 57.0 294 27.2
arahy.Tifrunner.gnm1.ann1.NV1IU0 Arachis hypogaea HOM05D000681 ORTHO05D007906 5.5e-06 57.0 294 27.2
arahy.Tifrunner.gnm1.ann1.7SWW0C Arachis hypogaea HOM05D000681 ORTHO05D007906 7.2e-06 56.6 294 27.2
Eucgr.E01026 Eucalyptus grandis HOM05D000681 ORTHO05D007906 7.2e-06 56.6 248 28.2
THA.LOC104823617 Tarenaya hassleriana HOM05D000681 ORTHO05D007906 9.4e-06 56.2 96 45.8


User provided reference genes

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