Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22569 Brassica carinata HOM05D007126 ORTHO05D008974 0.0e+00 1079.3 563 100.0
BolC9t54678H Brassica oleracea HOM05D007126 ORTHO05D008974 2.6e-306 1054.7 563 97.9
A09p14710 Brassica napus HOM05D007126 ORTHO05D008974 9.1e-304 1046.2 563 97.0
BraA09t37117Z Brassica rapa HOM05D007126 ORTHO05D008974 2.0e-303 1045.0 565 96.6
BcaB07g31464 Brassica carinata HOM05D007126 ORTHO05D008974 5.0e-302 1040.4 561 96.4
C09p17800 Brassica napus HOM05D007126 ORTHO05D008974 8.5e-286 986.5 531 96.6
Sp2g00310 Schrenkiella parvula HOM05D007126 ORTHO05D008974 2.7e-284 981.5 563 90.8
Thhalv10023389m.g Eutrema salsugineum HOM05D007126 ORTHO05D008974 3.6e-276 954.5 566 89.0
CARHR046500 Cardamine hirsuta HOM05D007126 ORTHO05D008974 8.3e-273 943.3 568 86.8
AT1G64430 Arabidopsis thaliana HOM05D007126 ORTHO05D008974 8.6e-270 933.3 564 87.4
AL2G10420 Arabidopsis lyrata HOM05D007126 ORTHO05D008974 1.5e-269 932.6 564 87.6
Aa31LG2G1430 Aethionema arabicum HOM05D007126 ORTHO05D008974 7.8e-255 883.6 568 84.2
THA.LOC104817626 Tarenaya hassleriana HOM05D007126 ORTHO05D008974 1.3e-228 796.6 582 75.3
CiPaw.11G120500 Carya illinoinensis HOM05D007126 ORTHO05D008974 1.3e-204 716.8 494 74.9
GSVIVG01019542001 Vitis vinifera HOM05D007126 ORTHO05D008974 9.0e-203 710.7 503 72.8
Atru.chr9.1971 Acer truncatum HOM05D007126 ORTHO05D008974 1.4e-200 703.4 564 66.8
Atru.chr9.1985 Acer truncatum HOM05D007126 ORTHO05D008974 1.4e-200 703.4 564 66.8
Manes.01G047820 Manihot esculenta HOM05D007126 ORTHO05D008974 4.2e-200 701.8 530 71.1
QL02p030251 Quercus lobata HOM05D007126 ORTHO05D008974 7.2e-200 701.0 526 70.7
Thecc.03G299000 Theobroma cacao HOM05D007126 ORTHO05D008974 9.4e-200 700.7 506 72.1
CANSAT21G1075 Cannabis sativa HOM05D007126 ORTHO05D008974 2.1e-199 699.5 511 70.3
Gorai.008G255000 Gossypium raimondii HOM05D007126 ORTHO05D008974 4.6e-199 698.4 516 70.9
Gohir.A12G236900 Gossypium hirsutum HOM05D007126 ORTHO05D008974 1.0e-198 697.2 516 70.9
Gohir.D12G238100 Gossypium hirsutum HOM05D007126 ORTHO05D008974 3.9e-198 695.3 516 70.7
Potri.001G090800 Populus trichocarpa HOM05D007126 ORTHO05D008974 2.0e-197 693.0 551 66.6
Prupe.5G121000 Prunus persica HOM05D007126 ORTHO05D008974 4.3e-197 691.8 507 70.4
PGR031G2002 Punica granatum HOM05D007126 ORTHO05D008974 1.7e-196 689.9 507 69.8
Duzib205G0473 Durio zibethinus HOM05D007126 ORTHO05D008974 3.7e-196 688.7 506 70.9
MD06G1108400 Malus domestica HOM05D007126 ORTHO05D008974 3.7e-196 688.7 503 70.4
Potri.003G140800 Populus trichocarpa HOM05D007126 ORTHO05D008974 3.7e-196 688.7 500 71.2
RcHm_v2.0_Chr7g0194681 Rosa chinensis HOM05D007126 ORTHO05D008974 1.8e-195 686.4 503 70.4
Lj4g0010714 Lotus japonicus HOM05D007126 ORTHO05D008974 9.1e-195 684.1 575 64.7
Hma1.2p1_0440F.1_g153370 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 5.9e-194 681.4 524 68.9
Sed0013130 Sechium edule HOM05D007126 ORTHO05D008974 1.0e-193 680.6 513 69.2
Ciclev10019342m.g Citrus clementina HOM05D007126 ORTHO05D008974 8.5e-193 677.6 545 65.1
CsaV3_4G006650 Cucumis sativus L. HOM05D007126 ORTHO05D008974 1.1e-192 677.2 500 69.8
Eucgr.D01749 Eucalyptus grandis HOM05D007126 ORTHO05D008974 1.4e-192 676.8 499 70.3
TWI15G1063 Tripterygium wilfordii HOM05D007126 ORTHO05D008974 1.6e-191 673.3 521 67.8
Glyma.08G023000 Glycine max HOM05D007126 ORTHO05D008974 2.1e-191 672.9 565 63.4
HanXRQChr17g0534861 Helianthus annuus HOM05D007126 ORTHO05D008974 2.1e-191 672.9 509 67.6
Actinidia22167 Actinidia chinensis HOM05D007126 ORTHO05D008974 6.7e-190 667.9 505 68.1
Migut.A00631 Erythranthe guttata HOM05D007126 ORTHO05D008974 1.1e-189 667.2 513 68.0
Nitab4.5_0000726g0050 Nicotiana tabacum HOM05D007126 ORTHO05D008974 1.1e-189 667.2 499 68.9
PGSC0003DMG400004995 Solanum tuberosum HOM05D007126 ORTHO05D008974 1.5e-189 666.8 503 69.0
CSS0001738 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 2.0e-189 666.4 495 69.1
VMungo0251G2926 Vigna mungo HOM05D007126 ORTHO05D008974 2.6e-189 666.0 515 67.6
CAN.G390.5 Capsicum annuum HOM05D007126 ORTHO05D008974 7.4e-189 664.5 510 68.6
Haze_09075 Corylus avellana HOM05D007126 ORTHO05D008974 7.4e-189 664.5 578 63.3
Medtr8g099525 Medicago truncatula HOM05D007126 ORTHO05D008974 9.7e-189 664.1 514 66.7
CSS0007498 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 1.8e-187 659.8 507 67.3
Sopen12g024410 Solanum pennellii HOM05D007126 ORTHO05D008974 2.4e-187 659.4 496 69.4
Sc22g0004970 Simmondsia chinensis HOM05D007126 ORTHO05D008974 3.5e-186 655.6 512 65.8
Solyc12g055940.3 Solanum lycopersicum HOM05D007126 ORTHO05D008974 1.3e-185 653.7 532 65.8
ECA246G3461 Erigeron canadensis HOM05D007126 ORTHO05D008974 1.4e-184 650.2 529 65.6
PSO063G3961 Papaver somniferum HOM05D007126 ORTHO05D008974 9.4e-184 647.5 523 65.8
Aqoxy5G04057_Aqoxy5G04058 Aquilegia oxysepala HOM05D007126 ORTHO05D008974 4.7e-183 645.2 504 64.9
TPR.G3456 Trifolium pratense HOM05D007126 ORTHO05D008974 3.0e-182 642.5 512 66.0
Lalb_Chr09g0332411 Lupinus albus HOM05D007126 ORTHO05D008974 1.7e-180 636.7 507 66.5
Hund11386 Selenicereus undatus HOM05D007126 ORTHO05D008974 6.3e-180 634.8 514 65.2
ClCG07G011560 Citrullus lanatus HOM05D007126 ORTHO05D008974 1.1e-179 634.0 507 65.9
Sabra01G0067000 Salix brachista HOM05D007126 ORTHO05D008974 4.5e-178 628.6 434 74.0
FvH4_5g04720 Fragaria vesca HOM05D007126 ORTHO05D008974 1.0e-177 627.5 465 69.7
Nitab4.5_0004010g0090 Nicotiana tabacum HOM05D007126 ORTHO05D008974 1.6e-175 620.2 493 65.9
MBI06_g08479_MAGBIO Magnolia biondii HOM05D007126 ORTHO05D008974 1.8e-174 616.7 518 62.9
Rhsim02G0244700 Rhododendron simsii HOM05D007126 ORTHO05D008974 1.2e-173 614.0 506 64.4
arahy.Tifrunner.gnm1.ann1.U3A0V6 Arachis hypogaea HOM05D007126 ORTHO05D008974 4.4e-173 612.1 491 65.8
AUR62010848 Chenopodium quinoa HOM05D007126 ORTHO05D008974 1.3e-172 610.5 482 64.7
AUR62019847 Chenopodium quinoa HOM05D007126 ORTHO05D008974 2.2e-172 609.8 508 62.0
Oeu009966.1 Olea europaea HOM05D007126 ORTHO05D008974 1.4e-171 607.1 485 64.9
Cc08_g16150 Coffea canephora HOM05D007126 ORTHO05D008974 1.8e-171 606.7 479 65.3
arahy.Tifrunner.gnm1.ann1.GEY0M8 Arachis hypogaea HOM05D007126 ORTHO05D008974 4.4e-165 585.5 473 66.2
ATR0598G096 Amborella trichopoda HOM05D007126 ORTHO05D008974 9.8e-165 584.3 513 59.3
DCAR_029908 Daucus carota HOM05D007126 ORTHO05D008974 9.8e-165 584.3 496 61.9
Lj2C166T10 Lonicera japonica HOM05D007126 ORTHO05D008974 2.8e-164 582.8 548 60.8
Lsat_1_v5_gn_3_10920 Lactuca sativa HOM05D007126 ORTHO05D008974 3.7e-164 582.4 522 60.2
Nn1g08439 Nelumbo nucifera HOM05D007126 ORTHO05D008974 7.7e-162 574.7 501 61.1
EL10Ac5g12922 Beta vulgaris HOM05D007126 ORTHO05D008974 7.2e-160 568.2 511 59.5
MELO3C016299.2 Cucumis melo HOM05D007126 ORTHO05D008974 1.2e-159 567.4 464 64.9
Hma1.2p1_0440F.1_g153360 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 6.8e-158 561.6 595 54.8
HPP92_007857 Vanilla planifolia HOM05D007126 ORTHO05D008974 1.2e-157 560.8 496 58.1
Peaxi162Scf00117g01130 Petunia axillaris HOM05D007126 ORTHO05D008974 4.5e-154 548.9 489 61.1
Psat7g210120 Pisum sativum HOM05D007126 ORTHO05D008974 1.9e-152 543.5 443 63.2
unitig_37.g12131 Utricularia gibba HOM05D007126 ORTHO05D008974 1.6e-151 540.4 517 56.5
Cpa.g.sc79.28 Carica papaya HOM05D007126 ORTHO05D008974 3.1e-150 536.2 449 64.1
SGA_v2.0_scaffold305G47987 Striga asiatica HOM05D007126 ORTHO05D008974 1.1e-144 517.7 536 55.0
SalBow1G1535 Salvia bowleyana HOM05D007126 ORTHO05D008974 2.6e-141 506.5 522 55.4
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 2.9e-140 503.1 515 54.4
Zm00001eb028190 Zea mays HOM05D007126 ORTHO05D008974 5.2e-134 482.3 520 51.0
Mapoly0029s0043 Marchantia polymorpha HOM05D007126 ORTHO05D008974 2.6e-133 479.9 508 50.4
vmacro11349 Vaccinium macrocarpon HOM05D007126 ORTHO05D008974 8.3e-132 474.9 547 51.6
Pp3c15_17220 Physcomitrium patens HOM05D007126 ORTHO05D008974 5.1e-129 465.7 490 49.2
Phvul.002G298304 Phaseolus vulgaris HOM05D007126 ORTHO05D008974 9.6e-128 461.5 317 75.7
TAR374G0215 Trochodendron aralioides HOM05D007126 ORTHO05D008974 3.6e-127 459.5 317 74.8
SMO367G1126 Selaginella moellendorffii HOM05D007126 ORTHO05D008974 1.0e-121 441.4 496 48.4
CDE08G1056 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 3.0e-113 413.3 347 58.8
Carub.0002s0034 Capsella rubella HOM05D007126 ORTHO05D008974 4.9e-108 396.0 231 92.6
Carub.0002s0035 Capsella rubella HOM05D007126 ORTHO05D008974 1.1e-102 378.3 255 78.4
CBR_g19104 Chara braunii HOM05D007126 ORTHO05D008974 1.1e-99 368.2 520 42.3
Cre14.g611950 Chlamydomonas reinhardtii HOM05D007126 ORTHO05D008974 8.0e-66 255.8 550 34.2
FAN18G3621 Fragaria x ananassa HOM05D007126 ORTHO05D008974 6.3e-63 246.1 188 65.4
FAN08G3578 Fragaria x ananassa HOM05D007126 ORTHO05D008974 7.2e-59 232.6 251 51.0
Os08g0332700 Oryza sativa ssp. japonica HOM05D007126 ORTHO05D008974 1.1e-51 208.8 247 47.4
SEGI_23531 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 2.5e-51 207.6 199 52.8
SEGI_08908 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 7.2e-51 206.1 182 53.8
CDE08G0877 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 8.8e-49 199.1 142 73.2
Dinv37525 Davidia involucrata HOM05D007126 ORTHO05D008974 1.8e-46 191.4 204 48.5
Cfa021999 Carpinus fangiana HOM05D007126 ORTHO05D008974 2.5e-35 154.5 182 51.6
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 2.5e-35 154.5 153 55.6
SEGI_34352 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 3.2e-30 137.5 112 63.4
Cpa.g.sc79.27 Carica papaya HOM05D007126 ORTHO05D008974 3.2e-22 110.9 70 87.1
FAN13G2101 Fragaria x ananassa HOM05D007126 ORTHO05D008974 2.0e-16 91.7 59 79.7
BcaC09g50327 Brassica carinata HOM05D017681 ORTHO05D019883 5.6e-11 73.6 117 41.9
BcaC04g20679 Brassica carinata HOM05D017681 ORTHO05D019883 3.6e-10 70.9 117 40.2


User provided reference genes

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