Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22559 Brassica carinata HOM05D002129 ORTHO05D002188 9.0e-194 680.6 504 100.0
C09p17910 Brassica napus HOM05D002129 ORTHO05D002188 4.5e-193 678.3 504 99.2
BolC9t54688H Brassica oleracea HOM05D002129 ORTHO05D002188 1.4e-183 646.7 504 96.4
A09p14790 Brassica napus HOM05D002129 ORTHO05D002188 2.5e-180 636.0 504 93.8
AL2G10610 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 2.0e-145 520.0 554 74.9
Thhalv10023387m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 5.0e-128 462.2 571 70.9
CARHR046630 Cardamine hirsuta HOM05D002129 ORTHO05D002188 1.9e-127 460.3 519 72.3
BcaB07g31455 Brassica carinata HOM05D002129 ORTHO05D002188 6.1e-118 428.7 548 72.3
Sp2g00430 Schrenkiella parvula HOM05D002129 ORTHO05D002188 9.8e-108 394.8 572 65.7
AT1G64330 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 1.3e-107 394.4 556 65.5
Carub.0002s0048 Capsella rubella HOM05D002129 ORTHO05D002188 1.3e-107 394.4 582 63.1
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 8.2e-62 242.3 501 50.9
BcaC02g08917 Brassica carinata HOM05D002129 ORTHO05D002188 1.9e-50 204.5 229 56.8
C04p49150 Brassica napus HOM05D002129 ORTHO05D002188 1.9e-50 204.5 229 56.8
BolC4t26499H Brassica oleracea HOM05D002129 ORTHO05D002188 1.9e-50 204.5 229 56.8
Sp7g00300 Schrenkiella parvula HOM05D002129 ORTHO05D002188 2.7e-49 200.7 233 58.8
Carub.0007s3359 Capsella rubella HOM05D002129 ORTHO05D002188 1.0e-48 198.7 286 52.8
BraA04t17139Z Brassica rapa HOM05D002129 ORTHO05D002188 1.5e-47 194.9 266 52.3
BcaB06g27672 Brassica carinata HOM05D002129 ORTHO05D002188 1.3e-46 191.8 230 58.3
A04p14960 Brassica napus HOM05D002129 ORTHO05D002188 1.7e-46 191.4 231 58.0
Carub.0007s3367 Capsella rubella HOM05D002129 ORTHO05D021914 1.1e-45 188.7 288 50.7
AT5G41790 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 2.0e-44 184.5 287 50.9
THA.LOC104809341 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 1.4e-42 178.3 185 66.5
AL7G47470 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 1.4e-40 171.8 289 49.1
CARHR212780 Cardamine hirsuta HOM05D002129 ORTHO05D002188 5.1e-40 169.9 188 64.9
Aa31LG9G340 Aethionema arabicum HOM05D002129 ORTHO05D002188 2.2e-38 164.5 222 56.3
Thhalv10027620m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 3.8e-35 153.7 306 46.4
A07p20930 Brassica napus HOM05D002129 ORTHO05D002188 6.5e-35 152.9 159 52.2
BolC6t37203H Brassica oleracea HOM05D002129 ORTHO05D002188 1.4e-34 151.8 310 46.1
BcaC08g44556 Brassica carinata HOM05D002129 ORTHO05D002188 1.0e-32 145.6 310 45.5
C06p20190 Brassica napus HOM05D001971 ORTHO05D002188 1.0e-32 145.6 310 45.5
Gohir.A02G102200 Gossypium hirsutum HOM05D002129 ORTHO05D002188 5.2e-32 143.3 263 38.4
Gohir.D03G081900 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.5e-31 141.7 215 43.7
Gorai.003G081700 Gossypium raimondii HOM05D002129 ORTHO05D002188 2.0e-31 141.4 253 39.5
Potri.001G094200 Populus trichocarpa HOM05D002129 ORTHO05D002188 2.6e-31 141.0 250 46.4
Potri.003G137400 Populus trichocarpa HOM05D002129 ORTHO05D002188 3.7e-30 137.1 223 43.9
COL.COLO4_21718 Corchorus olitorius HOM05D002129 ORTHO05D002188 2.4e-29 134.4 226 42.0
Manes.01G045900 Manihot esculenta HOM05D002129 ORTHO05D002188 3.1e-29 134.0 282 39.0
Manes.10G064266 Manihot esculenta HOM05D002129 ORTHO05D002188 3.1e-29 134.0 257 42.8
arahy.Tifrunner.gnm1.ann1.DN0YA4 Arachis hypogaea HOM05D002129 ORTHO05D002188 4.1e-29 133.7 297 36.7
Duzib205G0555 Durio zibethinus HOM05D002129 ORTHO05D002188 1.6e-28 131.7 261 38.3
Thecc.03G293200 Theobroma cacao HOM05D002129 ORTHO05D002188 3.5e-28 130.6 226 41.2
arahy.Tifrunner.gnm1.ann1.Q3GPI2 Arachis hypogaea HOM05D002129 ORTHO05D002188 4.5e-28 130.2 249 39.4
Gohir.D09G185400 Gossypium hirsutum HOM05D002129 ORTHO05D002188 4.5e-28 130.2 220 42.7
Gohir.A09G190800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 2.2e-27 127.9 219 41.6
Gorai.006G207900 Gossypium raimondii HOM05D002129 ORTHO05D002188 2.2e-27 127.9 218 42.2
Ciclev10018618m.g Citrus clementina HOM05D002129 ORTHO05D002188 8.5e-27 125.9 267 37.8
Oeu009945.1 Olea europaea HOM05D002129 ORTHO05D002188 1.9e-26 124.8 288 37.5
Sabra03G0098900 Salix brachista HOM05D002129 ORTHO05D002188 1.9e-26 124.8 240 37.1
Duzib068G1418 Durio zibethinus HOM05D002129 ORTHO05D002188 3.2e-26 124.0 269 34.2
TWI60G1278 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 3.2e-26 124.0 224 42.4
Solyc08g082010.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 4.2e-26 123.6 251 39.4
MD14G1121500 Malus domestica HOM05D002129 ORTHO05D002188 7.2e-26 122.9 214 42.1
Ca_17495_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 1.2e-25 122.1 289 38.1
C07p01920 Brassica napus HOM05D002129 ORTHO05D002188 2.1e-25 121.3 159 51.6
CSS0045654 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 2.1e-25 121.3 167 43.7
Cc08_g15780 Coffea canephora HOM05D002129 ORTHO05D002188 8.0e-25 119.4 214 43.0
TPR.G3412 Trifolium pratense HOM05D002129 ORTHO05D002188 2.3e-24 117.9 215 42.8
Actinidia27335 Actinidia chinensis HOM05D002129 ORTHO05D002188 3.0e-24 117.5 296 37.2
Dinv37550 Davidia involucrata HOM05D002129 ORTHO05D002188 4.0e-24 117.1 193 44.6
FAN18G3989 Fragaria x ananassa HOM05D002129 ORTHO05D002188 4.0e-24 117.1 193 43.0
RcHm_v2.0_Chr7g0195431 Rosa chinensis HOM05D002129 ORTHO05D002188 5.2e-24 116.7 199 42.7
FvH4_5g04072 Fragaria vesca HOM05D002129 ORTHO05D002188 1.5e-23 115.2 193 42.5
Manes.02G012600 Manihot esculenta HOM05D002129 ORTHO05D002188 1.5e-23 115.2 193 44.0
Sopen08g030310 Solanum pennellii HOM05D002129 ORTHO05D002188 2.0e-23 114.8 221 41.2
Cfa012842 Carpinus fangiana HOM05D002129 ORTHO05D002188 3.3e-23 114.0 188 39.9
Haze_08667 Corylus avellana HOM05D002129 ORTHO05D002188 4.4e-23 113.6 183 41.0
Sabra01G0070100 Salix brachista HOM05D002129 ORTHO05D002188 5.7e-23 113.2 216 44.4
TAR374G0929 Trochodendron aralioides HOM05D002129 ORTHO05D002188 5.7e-23 113.2 297 34.0
Lalb_Chr05g0224241 Lupinus albus HOM05D002129 ORTHO05D002188 7.5e-23 112.8 202 38.1
Phvul.002G296300 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 9.7e-23 112.5 226 41.2
Medtr8g099275 Medicago truncatula HOM05D002129 ORTHO05D002188 1.3e-22 112.1 266 35.0
Lsat_1_v5_gn_6_12040 Lactuca sativa HOM05D002129 ORTHO05D002188 1.7e-22 111.7 218 41.7
Oeu042387.1 Olea europaea HOM05D002129 ORTHO05D002188 1.7e-22 111.7 194 44.3
Atru.chr9.2042 Acer truncatum HOM05D002129 ORTHO05D002188 3.7e-22 110.5 157 47.8
Nitab4.5_0000223g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 6.3e-22 109.8 237 38.4
FAN08G2643 Fragaria x ananassa HOM05D002129 ORTHO05D002188 8.2e-22 109.4 207 40.6
Eucgr.E00844 Eucalyptus grandis HOM05D002129 ORTHO05D002188 1.1e-21 109.0 273 36.6
Lj4g0008940 Lotus japonicus HOM05D002129 ORTHO05D002188 1.1e-21 109.0 207 41.5
FAN13G0971 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.4e-21 108.6 207 41.1
Nitab4.5_0004161g0030 Nicotiana tabacum HOM05D002129 ORTHO05D002188 2.4e-21 107.8 207 41.5
QL02p031434 Quercus lobata HOM05D002129 ORTHO05D002188 2.4e-21 107.8 183 41.5
Glyma.08G021400 Glycine max HOM05D002129 ORTHO05D002188 3.1e-21 107.5 212 42.0
vmacro13912 Vaccinium macrocarpon HOM05D002129 ORTHO05D002188 3.1e-21 107.5 183 37.2
Duzib084G0477 Durio zibethinus HOM05D002129 ORTHO05D002188 4.1e-21 107.1 201 38.8
Lalb_Chr16g0390551 Lupinus albus HOM05D002129 ORTHO05D002188 2.7e-20 104.4 262 31.7
Rhsim07G0084000 Rhododendron simsii HOM05D002129 ORTHO05D002188 3.5e-20 104.0 183 37.7
CiPaw.12G085000 Carya illinoinensis HOM05D002129 ORTHO05D002188 4.5e-20 103.6 178 42.7
AUR62019808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 4.5e-20 103.6 182 35.2
PGSC0003DMG400012303 Solanum tuberosum HOM05D002129 ORTHO05D002188 7.7e-20 102.8 176 44.9
AUR62010809 Chenopodium quinoa HOM05D002129 ORTHO05D002188 1.3e-19 102.1 181 34.3
ClCG07G014890 Citrullus lanatus HOM05D002129 ORTHO05D002188 1.7e-19 101.7 228 39.5
CAN.G532.94 Capsicum annuum HOM05D002129 ORTHO05D002188 3.8e-19 100.5 184 41.8
Glyma.05G215100 Glycine max HOM05D002129 ORTHO05D002188 6.5e-19 99.8 299 35.1
MSTRG.25657 Avicennia marina HOM05D002129 ORTHO05D002188 2.5e-18 97.8 299 36.5
CiPaw.11G123900 Carya illinoinensis HOM05D002129 ORTHO05D002188 5.5e-18 96.7 179 36.9
Cpa.g.sc79.65 Carica papaya HOM05D002129 ORTHO05D002188 7.2e-18 96.3 225 40.0
MD06G1102300 Malus domestica HOM05D002129 ORTHO05D002188 7.2e-18 96.3 186 41.4
A07p20920 Brassica napus HOM05D002129 ORTHO05D002188 1.2e-17 95.5 162 52.5
SGA_v2.0_scaffold111G31429 Striga asiatica HOM05D002129 ORTHO05D002188 1.2e-17 95.5 283 35.3
VMungo0251G1428 Vigna mungo HOM05D002129 ORTHO05D002188 2.1e-17 94.7 301 31.6
CANSAT21G2383 Cannabis sativa HOM05D002129 ORTHO05D002188 4.7e-17 93.6 185 38.9
SalBow1G3214 Salvia bowleyana HOM05D002129 ORTHO05D002188 4.7e-17 93.6 254 34.3
Lalb_Chr09g0332631 Lupinus albus HOM05D002129 ORTHO05D002188 6.1e-17 93.2 222 36.5
CsaV3_4G006420 Cucumis sativus L. HOM05D002129 ORTHO05D002188 1.0e-16 92.4 228 35.5
SGA_v2.0_scaffold144G35850 Striga asiatica HOM05D002129 ORTHO05D002188 2.3e-16 91.3 262 36.3
Psat7g027680 Pisum sativum HOM05D002129 ORTHO05D002188 3.0e-16 90.9 214 40.7
MELO3C016308.2 Cucumis melo HOM05D002129 ORTHO05D002188 6.8e-16 89.7 228 35.1
FAN04G1700 Fragaria x ananassa HOM05D002129 ORTHO05D002188 6.8e-16 89.7 244 35.7
FAN04G3154 Fragaria x ananassa HOM05D002129 ORTHO05D002188 6.8e-16 89.7 244 35.7
Peaxi162Scf00074g01134 Petunia axillaris HOM05D002129 ORTHO05D002188 6.8e-16 89.7 243 35.4
ECA233G6022 Erigeron canadensis HOM05D002129 ORTHO05D002188 2.0e-15 88.2 229 35.4
HanXRQChr03g0085141 Helianthus annuus HOM05D002129 ORTHO05D002188 4.4e-15 87.0 197 41.1
SalBow8G2059 Salvia bowleyana HOM05D002129 ORTHO05D002188 4.4e-15 87.0 192 44.8
Migut.E01236 Erythranthe guttata HOM05D002129 ORTHO05D002188 5.7e-15 86.7 181 40.3
FAN18G4528 Fragaria x ananassa HOM05D002129 ORTHO05D002188 5.7e-15 86.7 161 42.2
Dinv38857 Davidia involucrata HOM05D002129 ORTHO05D002188 9.8e-15 85.9 637 23.1
Sed0022097 Sechium edule HOM05D002129 ORTHO05D002188 1.3e-14 85.5 259 32.0
GSVIVG01019499001 Vitis vinifera HOM05D002129 ORTHO05D002188 1.7e-14 85.1 228 29.4
arahy.Tifrunner.gnm1.ann1.F3VNHJ Arachis hypogaea HOM05D002129 ORTHO05D002188 2.2e-14 84.7 149 35.6
CSS0018198 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 2.8e-14 84.3 219 33.3
BcaC06g36642 Brassica carinata HOM05D002129 ORTHO05D002188 3.7e-14 84.0 132 46.2
BolC7t40600H Brassica oleracea HOM05D002129 ORTHO05D002188 3.7e-14 84.0 132 46.2
HanXRQChr02g0048241 Helianthus annuus HOM05D002129 ORTHO05D002188 4.8e-14 83.6 178 37.6
Sc07g0009960 Simmondsia chinensis HOM05D002129 ORTHO05D002188 8.3e-14 82.8 209 32.1
arahy.Tifrunner.gnm1.ann1.P7UIV5 Arachis hypogaea HOM05D002129 ORTHO05D002188 1.8e-13 81.6 149 34.2
PGR042G1587 Punica granatum HOM05D002129 ORTHO05D002188 2.4e-13 81.3 277 33.6
CSS0027740 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 3.1e-13 80.9 220 32.3
Aqoxy5G04152 Aquilegia oxysepala HOM05D002129 ORTHO05D002188 9.1e-13 79.3 280 33.9
PSO135G0315 Papaver somniferum HOM05D031015 ORTHO05D002188 2.3e-11 74.7 253 32.4
Prupe.5G115200 Prunus persica HOM05D002129 ORTHO05D002188 2.3e-11 74.7 288 28.1
DCAR_005027 Daucus carota HOM05D002129 ORTHO05D002188 2.9e-11 74.3 240 30.0
ECA240G2507 Erigeron canadensis HOM05D002129 ORTHO05D002188 2.9e-11 74.3 217 35.0
PSO170G1432 Papaver somniferum HOM05D031015 ORTHO05D002188 3.8e-11 73.9 92 37.0
Rhsim02G0241100 Rhododendron simsii HOM05D002129 ORTHO05D002188 5.0e-11 73.6 64 56.2
C08p22900 Brassica napus HOM05D002129 ORTHO05D016708 1.5e-10 72.0 265 44.9
BolC8t49926H Brassica oleracea HOM05D002129 ORTHO05D016708 1.5e-10 72.0 265 44.9
Actinidia01396 Actinidia chinensis HOM05D002129 ORTHO05D002188 2.5e-10 71.2 252 29.4
Migut.N02095 Erythranthe guttata HOM05D002129 ORTHO05D002188 2.5e-10 71.2 268 26.9
Actinidia04211 Actinidia chinensis HOM05D002129 ORTHO05D002188 5.5e-10 70.1 162 32.7
BcaC07g39281 Brassica carinata HOM05D002129 ORTHO05D016708 5.5e-10 70.1 265 26.4
CSS0047098 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 5.5e-10 70.1 93 40.9
Duzib084G0891 Durio zibethinus HOM05D002129 ORTHO05D002188 5.5e-10 70.1 188 29.3
Lsat_1_v5_gn_6_85821 Lactuca sativa HOM05D002129 ORTHO05D002188 5.5e-10 70.1 526 28.7
Prupe.5G115300 Prunus persica HOM05D002129 ORTHO05D002188 5.5e-10 70.1 64 57.8
vmacro11445 Vaccinium macrocarpon HOM05D001971 ORTHO05D003057 5.5e-10 70.1 167 33.5
EL10Ac5g12884 Beta vulgaris HOM05D002129 ORTHO05D002188 7.2e-10 69.7 177 39.5
MD06G1102200 Malus domestica HOM05D002129 ORTHO05D002188 7.2e-10 69.7 288 29.5
PSO384G3006 Papaver somniferum HOM05D031015 ORTHO05D002188 7.2e-10 69.7 92 34.8
CSS0006894 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 9.5e-10 69.3 93 40.9
Gohir.D04G079828 Gossypium hirsutum HOM05D002129 ORTHO05D002188 3.6e-09 67.4 166 30.1
Dinv37551 Davidia involucrata HOM05D002129 ORTHO05D002188 4.7e-09 67.0 88 42.0
Migut.E01235 Erythranthe guttata HOM05D002129 ORTHO05D002188 4.7e-09 67.0 275 29.1
Ca_17494_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 6.1e-09 66.6 47 63.8
MD14G1121400 Malus domestica HOM05D002129 ORTHO05D002188 6.1e-09 66.6 283 28.6
Thecc.03G293100 Theobroma cacao HOM05D002129 ORTHO05D002188 8.0e-09 66.2 269 27.5
CSS0015477 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.4e-08 65.5 243 26.7
Potri.003G137300 Populus trichocarpa HOM05D002129 ORTHO05D002188 3.0e-08 64.3 284 25.4
Sc07g0009950 Simmondsia chinensis HOM05D002129 ORTHO05D002188 3.0e-08 64.3 276 25.0
BcaC07g37238 Brassica carinata HOM05D002129 ORTHO05D002188 4.0e-08 63.9 50 76.0
Hund11405 Selenicereus undatus HOM05D002129 ORTHO05D002188 8.9e-08 62.8 168 41.1
CAN.G26.3 Capsicum annuum HOM05D002129 ORTHO05D002188 1.2e-07 62.4 287 27.5
Gohir.A05G349350 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.5e-07 62.0 40 67.5
Gohir.A09G007350 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.5e-07 62.0 40 67.5
Gorai.008G186100 Gossypium raimondii HOM05D002129 ORTHO05D002188 1.5e-07 62.0 40 67.5
CANSAT21G0822 Cannabis sativa HOM05D002129 ORTHO05D002188 2.6e-07 61.2 286 26.9
Oeu061086.1 Olea europaea HOM05D002129 ORTHO05D002188 2.6e-07 61.2 294 25.2
TAR374G1003 Trochodendron aralioides HOM05D002129 ORTHO05D002188 3.4e-07 60.8 55 56.4
Duzib068G0910 Durio zibethinus HOM05D002129 ORTHO05D002188 4.4e-07 60.5 55 54.5
SalBow8G3978 Salvia bowleyana HOM05D002129 ORTHO05D002188 9.8e-07 59.3 63 49.2
ECA246G1519 Erigeron canadensis HOM05D002129 ORTHO05D002188 2.2e-06 58.2 62 48.4
SGA_v2.0_scaffold173G39089 Striga asiatica HOM05D002129 ORTHO05D002188 2.2e-06 58.2 55 50.9
COL.COLO4_21719 Corchorus olitorius HOM05D002129 ORTHO05D002188 3.7e-06 57.4 58 53.4
QL12p009828 Quercus lobata HOM05D002129 ORTHO05D002188 3.7e-06 57.4 283 25.1
QL12p010595 Quercus lobata HOM05D002129 ORTHO05D002188 3.7e-06 57.4 283 25.1
HanXRQChr10g0292651 Helianthus annuus HOM05D002129 ORTHO05D002188 4.9e-06 57.0 62 48.4
BcaC02g11041 Brassica carinata HOM05D002129 ORTHO05D016708 6.3e-06 56.6 145 32.4
Cpa.g.sc122.43 Carica papaya HOM05D002129 ORTHO05D002188 6.3e-06 56.6 38 65.8
Nitab4.5_0002944g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 6.3e-06 56.6 52 53.8
Nitab4.5_0006656g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 6.3e-06 56.6 52 53.8
unitig_748.g7418 Utricularia gibba HOM05D002129 ORTHO05D002188 6.3e-06 56.6 55 49.1


User provided reference genes

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