Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22534 Brassica carinata HOM05D003548 ORTHO05D004066 3.5e-206 722.2 648 100.0
C09p18070 Brassica napus HOM05D003548 ORTHO05D004066 3.5e-206 722.2 648 100.0
BolC9t54704H Brassica oleracea HOM05D003548 ORTHO05D004066 1.2e-203 713.8 649 99.4
A09p14950 Brassica napus HOM05D003548 ORTHO05D004066 2.1e-171 606.7 650 92.3
BraA09t37140Z Brassica rapa HOM05D003548 ORTHO05D004066 1.4e-170 604.0 650 92.2
Sp2g00590 Schrenkiella parvula HOM05D003548 ORTHO05D004066 6.4e-160 568.5 660 88.0
Thhalv10023333m.g Eutrema salsugineum HOM05D003548 ORTHO05D004066 1.4e-159 567.4 661 87.9
AL2G10890 Arabidopsis lyrata HOM05D003548 ORTHO05D004066 8.6e-149 531.6 654 86.1
BraA09t37059Z Brassica rapa HOM05D003548 ORTHO05D004066 3.1e-146 523.1 664 87.3
AT1G64140 Arabidopsis thaliana HOM05D003548 ORTHO05D004066 6.9e-146 521.9 654 85.5
BcaB07g31439 Brassica carinata HOM05D003548 ORTHO05D008486 3.4e-145 519.6 652 86.2
A09p14120 Brassica napus HOM05D003548 ORTHO05D004066 6.0e-142 508.8 665 86.8
Carub.0002s0067 Capsella rubella HOM05D003548 ORTHO05D004066 2.3e-141 506.9 657 84.8
BcaB07g31525 Brassica carinata HOM05D003548 ORTHO05D004066 6.4e-136 488.8 661 84.3
C09p17010 Brassica napus HOM05D003548 ORTHO05D004066 1.1e-132 478.0 662 82.9
BcaC04g22655 Brassica carinata HOM05D003548 ORTHO05D004066 1.8e-130 470.7 662 82.3
BolC9t54599H Brassica oleracea HOM05D003548 ORTHO05D004066 1.8e-117 427.6 655 79.5
CARHR046800 Cardamine hirsuta HOM05D003548 ORTHO05D004066 6.7e-117 425.6 629 80.6
BcaC04g22535 Brassica carinata HOM05D003548 ORTHO05D004066 9.1e-98 362.1 240 87.9
Aa31LG2G1190 Aethionema arabicum HOM05D003548 ORTHO05D004066 2.4e-90 337.4 662 74.0
THA.LOC104809354 Tarenaya hassleriana HOM05D003548 ORTHO05D004066 2.0e-73 281.2 668 69.5
Prupe.5G110700 Prunus persica HOM05D003548 ORTHO05D004066 2.3e-56 224.6 664 65.5
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 1.1e-55 222.2 674 65.6
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 1.5e-55 221.9 657 66.1
Phvul.002G294600 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 2.5e-55 221.1 677 63.8
ClCG01G002150 Citrullus lanatus HOM05D003548 ORTHO05D004066 1.4e-53 215.3 688 63.2
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 7.5e-52 209.5 208 67.8
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 7.5e-52 209.5 678 64.5
MELO3C005727.2 Cucumis melo HOM05D003548 ORTHO05D004066 2.2e-51 208.0 687 63.0
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 8.3e-51 206.1 674 64.4
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 1.4e-50 205.3 669 64.1
MD06G1096100 Malus domestica HOM05D003548 ORTHO05D004066 1.4e-50 205.3 664 64.8
CsaV3_5G002270 Cucumis sativus L. HOM05D003548 ORTHO05D004066 2.4e-50 204.5 667 64.3
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 9.2e-50 202.6 675 62.7
CANSAT21G0595 Cannabis sativa HOM05D003548 ORTHO05D004066 2.3e-48 198.0 661 63.4
TPR.G3387 Trifolium pratense HOM05D000059 ORTHO05D004066 6.6e-48 196.4 670 63.4
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 8.6e-48 196.1 674 62.6
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 8.6e-48 196.1 684 62.0
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 5.6e-47 193.4 306 49.0
Gohir.A09G191100 Gossypium hirsutum HOM05D003548 ORTHO05D004066 5.6e-47 193.4 675 63.3
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 7.3e-47 193.0 306 49.0
Glyma.01G223400 Glycine max HOM05D003548 ORTHO05D004066 7.3e-47 193.0 679 63.2
FvH4_5g03650 Fragaria vesca HOM05D003548 ORTHO05D004066 9.5e-47 192.6 686 59.9
Gorai.006G208300 Gossypium raimondii HOM05D003548 ORTHO05D004066 1.6e-46 191.8 675 63.4
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 2.8e-46 191.0 674 61.1
Gohir.D09G185600 Gossypium hirsutum HOM05D003548 ORTHO05D004066 2.8e-46 191.0 675 63.6
Sed0010954 Sechium edule HOM05D003548 ORTHO05D004066 2.3e-45 188.0 674 61.9
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 3.1e-45 187.6 307 47.2
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 4.0e-45 187.2 664 63.3
FAN13G1218 Fragaria x ananassa HOM05D003548 ORTHO05D004066 5.2e-45 186.8 685 60.6
Medtr8g099105 Medicago truncatula HOM05D003548 ORTHO05D004066 8.9e-45 186.0 306 46.7
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 8.9e-45 186.0 679 61.9
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 2.6e-44 184.5 673 63.0
VMungo0251G1700 Vigna mungo HOM05D003548 ORTHO05D004066 2.6e-44 184.5 666 62.0
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 5.8e-44 183.3 666 62.8
Dinv38885 Davidia involucrata HOM05D003548 ORTHO05D004066 5.8e-44 183.3 306 47.4
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 9.9e-44 182.6 672 64.0
FAN13G0102 Fragaria x ananassa HOM05D003548 ORTHO05D004066 9.9e-44 182.6 686 59.5
FAN18G1037 Fragaria x ananassa HOM05D003548 ORTHO05D004066 3.7e-43 180.6 688 60.5
Sed0003878 Sechium edule HOM05D003548 ORTHO05D004066 4.9e-43 180.3 683 61.3
FAN04G2241 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.9e-42 178.3 687 59.5
arahy.Tifrunner.gnm1.ann1.59PT6M Arachis hypogaea HOM05D003548 ORTHO05D004066 5.4e-42 176.8 690 60.6
FAN04G1462 Fragaria x ananassa HOM05D003548 ORTHO05D004066 7.1e-42 176.4 688 59.6
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 9.2e-42 176.0 698 59.9
arahy.Tifrunner.gnm1.ann1.36D870 Arachis hypogaea HOM05D003548 ORTHO05D004066 1.2e-41 175.6 690 60.6
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 1.6e-41 175.3 306 46.1
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 1.6e-41 175.3 676 62.1
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.6e-41 175.3 681 60.2
Potri.003G134200 Populus trichocarpa HOM05D003548 ORTHO05D004066 2.1e-41 174.9 676 62.1
Duzib068G0600 Durio zibethinus HOM05D003548 ORTHO05D004066 1.0e-40 172.6 634 65.1
MD14G1116300 Malus domestica HOM05D003548 ORTHO05D004066 1.0e-40 172.6 670 63.0
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 1.3e-40 172.2 677 62.2
TWI81G0889 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 2.3e-40 171.4 303 45.9
Ca_10964_v3 Cicer arietinum L. HOM05D003548 ORTHO05D004066 3.0e-40 171.0 675 61.9
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.5e-39 168.7 672 62.8
RcHm_v2.0_Chr7g0196081 Rosa chinensis HOM05D003548 ORTHO05D004066 3.3e-39 167.5 302 44.4
Manes.02G014900 Manihot esculenta HOM05D003548 ORTHO05D004066 7.3e-39 166.4 680 61.0
Oeu042375.2 Olea europaea HOM05D003548 ORTHO05D004066 2.1e-38 164.9 304 45.4
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 3.6e-38 164.1 670 62.4
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 8.1e-38 162.9 297 43.1
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 2.4e-37 161.4 671 62.1
Lalb_Chr16g0390341 Lupinus albus HOM05D003548 ORTHO05D004066 8.9e-37 159.5 664 61.0
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 2.0e-36 158.3 669 59.9
CiPaw.12G087100 Carya illinoinensis HOM05D003548 ORTHO05D004066 5.8e-36 156.8 658 61.1
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 1.7e-35 155.2 692 58.7
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 2.9e-35 154.5 668 60.3
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 4.9e-35 153.7 291 45.0
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 8.4e-35 152.9 665 60.9
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 5.4e-34 150.2 653 60.6
CiPaw.11G126900 Carya illinoinensis HOM05D003548 ORTHO05D004066 9.2e-34 149.4 668 60.8
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 2.7e-33 147.9 302 42.7
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 4.6e-33 147.1 306 39.5
Gohir.D03G080300 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.3e-32 145.6 304 41.4
Sabra03G0096600 Salix brachista HOM05D003548 ORTHO05D004066 1.6e-30 138.7 670 59.7
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 4.7e-30 137.1 305 39.3
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 9.0e-29 132.9 306 38.9
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 2.0e-28 131.7 306 39.5
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 2.0e-28 131.7 306 39.5
GSVIVG01028755001 Vitis vinifera HOM05D003548 ORTHO05D004066 2.6e-28 131.3 269 40.1
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 7.6e-28 129.8 296 37.8
Cpa.g.sc321.2 Carica papaya HOM05D003548 ORTHO05D004066 2.2e-27 128.3 141 61.7
Sopen08g004030 Solanum pennellii HOM05D003548 ORTHO05D004066 2.2e-27 128.3 310 38.1
TAR636G0920 Trochodendron aralioides HOM05D003548 ORTHO05D004066 2.9e-27 127.9 306 37.9
Oeu042369.1 Olea europaea HOM05D003548 ORTHO05D004066 1.9e-26 125.2 280 42.1
Solyc08g008180.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 1.9e-26 125.2 310 38.1
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 5.4e-26 123.6 307 40.7
TAR629G2865 Trochodendron aralioides HOM05D003548 ORTHO05D004066 3.5e-25 120.9 299 38.1
Phvul.002G161400 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 4.6e-25 120.6 652 56.0
Ciclev10019140m.g Citrus clementina HOM05D003548 ORTHO05D004066 6.0e-25 120.2 674 59.2
PGSC0003DMG400005830 Solanum tuberosum HOM05D003548 ORTHO05D004066 3.0e-24 117.9 309 37.2
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 5.1e-24 117.1 290 39.0
ECA233G1322 Erigeron canadensis HOM05D003548 ORTHO05D004066 6.6e-24 116.7 262 39.3
VMungo1215G2254 Vigna mungo HOM05D003548 ORTHO05D004066 6.6e-24 116.7 297 38.7
Nitab4.5_0002944g0150 Nicotiana tabacum HOM05D003548 ORTHO05D004066 1.9e-23 115.2 298 37.2
unitig_32.g11608 Utricularia gibba HOM05D003548 ORTHO05D004066 1.9e-23 115.2 300 36.3
PGSC0003DMG400012172 Solanum tuberosum HOM05D003548 ORTHO05D004066 2.5e-23 114.8 306 36.6
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 3.3e-23 114.4 323 36.5
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 4.3e-23 114.0 670 59.4
PGR031G0552 Punica granatum HOM05D003548 ORTHO05D004066 7.3e-23 113.2 300 37.3
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 9.6e-23 112.8 680 56.3
HanXRQChr06g0166281 Helianthus annuus HOM05D003548 ORTHO05D004066 6.9e-21 106.7 261 37.5
MSTRG.25643 Avicennia marina HOM05D003548 ORTHO05D004066 9.0e-21 106.3 309 36.6
AUR62019776 Chenopodium quinoa HOM05D003548 ORTHO05D004066 9.0e-21 106.3 309 37.5
HanXRQChr17g0533931 Helianthus annuus HOM05D003548 ORTHO05D004066 9.0e-21 106.3 295 34.6
SGA_v2.0_scaffold96G28999 Striga asiatica HOM05D003548 ORTHO05D004066 1.5e-20 105.5 302 36.8
PGR042G3215 Punica granatum HOM05D003548 ORTHO05D004066 4.5e-20 104.0 265 37.0
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 7.6e-20 103.2 300 36.7
Actinidia08610 Actinidia chinensis HOM05D003548 ORTHO05D004066 4.9e-19 100.5 259 37.8
Sc01g0009980 Simmondsia chinensis HOM05D003548 ORTHO05D004066 4.9e-19 100.5 310 31.9
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 1.1e-18 99.4 219 37.4
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 1.1e-18 99.4 300 35.0
Gohir.D03G080200 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.9e-18 98.6 137 49.6
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 7.1e-18 96.7 653 56.7
CSS0041240 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 2.1e-17 95.1 285 37.5
CSS0049608 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 2.1e-17 95.1 285 37.5
Rhsim02G0237200 Rhododendron simsii HOM05D003548 ORTHO05D004066 2.1e-17 95.1 303 36.0
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 7.9e-17 93.2 257 35.8
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 7.9e-17 93.2 292 34.9
GSVIVG01003094001 Vitis vinifera HOM05D003548 ORTHO05D004066 1.0e-16 92.8 157 46.5
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 1.3e-16 92.4 278 35.6
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 2.3e-16 91.7 295 34.2
unitig_748.g7420 Utricularia gibba HOM05D003548 ORTHO05D004066 3.0e-16 91.3 277 32.1
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 3.0e-16 91.3 297 34.0
AUR62010777 Chenopodium quinoa HOM05D003548 ORTHO05D004066 6.7e-16 90.1 314 34.7
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 6.7e-16 90.1 683 55.3
Eucgr.D01792 Eucalyptus grandis HOM05D003548 ORTHO05D004066 1.1e-15 89.4 129 46.5
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 4.3e-15 87.4 258 34.5
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 5.6e-15 87.0 665 57.4
Zm00001eb159560 Zea mays HOM05D003548 ORTHO05D004066 9.6e-15 86.3 269 34.9
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 1.3e-14 85.9 273 33.0
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 1.3e-14 85.9 675 57.0
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 2.1e-14 85.1 285 33.0
Os01g0621900 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 2.1e-14 85.1 292 33.6
MSTRG.11944 Avicennia marina HOM05D003548 ORTHO05D004066 8.1e-14 83.2 670 56.4
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 2.4e-13 81.6 208 31.2
Zm00001eb204020 Zea mays HOM05D003548 ORTHO05D004066 2.4e-13 81.6 244 36.5
Zm00001eb344910 Zea mays HOM05D003548 ORTHO05D004066 2.4e-13 81.6 227 37.9
Nitab4.5_0000966g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 3.1e-13 81.3 137 40.9
vmacro06591 Vaccinium macrocarpon HOM05D003548 ORTHO05D004066 4.0e-13 80.9 262 32.8
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 9.0e-13 79.7 245 33.1
Nitab4.5_0007898g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 1.5e-12 79.0 137 40.1
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 1.5e-12 79.0 245 32.7
SHI07056 Sapria himalayana HOM05D003548 ORTHO05D004066 5.8e-12 77.0 280 35.7
AUR62031460 Chenopodium quinoa HOM05D003548 ORTHO05D004066 7.6e-12 76.6 271 32.1
EL10Ac5g12854 Beta vulgaris HOM05D003548 ORTHO05D004066 9.9e-12 76.3 306 31.7
Ah.13g069690 Amaranthus hybridus HOM05D003548 ORTHO05D004066 1.7e-11 75.5 283 32.2
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 1.7e-11 75.5 254 32.7
Ah.12g052120 Amaranthus hybridus HOM05D000265 ORTHO05D000161 2.2e-11 75.1 296 32.1
Lsat_1_v5_gn_9_57161 Lactuca sativa HOM05D003548 ORTHO05D004066 8.4e-11 73.2 224 34.4
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 1.9e-10 72.0 193 35.8
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 5.5e-10 70.5 238 29.4
Rhsim02G0237300 Rhododendron simsii HOM05D003548 ORTHO05D004066 2.7e-09 68.2 136 36.8
AT4G12020 Arabidopsis thaliana HOM05D000005 ORTHO05D012037 4.6e-09 67.4 98 48.0
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 6.0e-09 67.0 505 65.5
PGSC0003DMG400028194 Solanum tuberosum HOM05D003548 ORTHO05D004066 1.3e-08 65.9 557 47.6
Hma1.2p1_0142F.1_g064160 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 1.8e-08 65.5 270 30.7
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 2.3e-08 65.1 258 31.0
AUR62021071 Chenopodium quinoa HOM05D003548 ORTHO05D004066 5.1e-08 63.9 268 29.9
Migut.F01061 Erythranthe guttata HOM05D003548 ORTHO05D004066 6.7e-08 63.5 228 28.5
CDE02G2034 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 1.1e-07 62.8 297 28.6
HanXRQChr09g0253141 Helianthus annuus HOM05D003548 ORTHO05D004066 3.3e-07 61.2 195 29.2
Lj2P175T19 Lonicera japonica HOM05D003548 ORTHO05D004066 7.4e-07 60.1 148 37.2
ECA232G3387 Erigeron canadensis HOM05D003548 ORTHO05D004066 9.6e-07 59.7 285 29.8
HPP92_023971 Vanilla planifolia HOM05D003548 ORTHO05D004066 9.6e-07 59.7 265 32.5
MBI07_g06320_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 2.8e-06 58.2 112 37.5
HanXRQChr15g0493381 Helianthus annuus HOM05D003548 ORTHO05D004066 3.7e-06 57.8 232 31.5


User provided reference genes

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