Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22507 Brassica carinata HOM05D007467 ORTHO05D009441 2.8e-133 478.8 268 100.0
C09p18550 Brassica napus HOM05D007467 ORTHO05D009441 6.8e-124 447.6 268 94.8
BolC9t54751H Brassica oleracea HOM05D007467 ORTHO05D009441 6.8e-124 447.6 268 94.8
A09p15270 Brassica napus HOM05D007467 ORTHO05D009441 3.9e-119 431.8 268 92.5
BraA09t37173Z Brassica rapa HOM05D007467 ORTHO05D009441 3.9e-119 431.8 268 92.5
BcaB07g31413 Brassica carinata HOM05D007467 ORTHO05D009441 6.8e-100 367.9 269 82.9
Sp2g00870 Schrenkiella parvula HOM05D007467 ORTHO05D009441 5.3e-92 341.7 272 76.5
Thhalv10023631m.g Eutrema salsugineum HOM05D007467 ORTHO05D009441 1.0e-87 327.4 284 67.3
CARHR046220 Cardamine hirsuta HOM05D007467 ORTHO05D009441 7.3e-86 321.2 270 68.5
AT1G64690 Arabidopsis thaliana HOM05D007467 ORTHO05D009441 4.6e-80 302.0 270 69.3
Carub.0002s0004 Capsella rubella HOM05D007467 ORTHO05D009441 8.1e-77 291.2 270 69.6
AL2G10070 Arabidopsis lyrata HOM05D007467 ORTHO05D009441 1.8e-76 290.0 270 66.7
Aa31LG2G1740 Aethionema arabicum HOM05D007467 ORTHO05D009441 4.9e-74 282.0 283 65.7
Manes.02G001700 Manihot esculenta HOM05D007467 ORTHO05D009441 1.9e-41 173.7 298 41.6
Gohir.A12G240800 Gossypium hirsutum HOM05D007467 ORTHO05D009441 7.2e-41 171.8 271 45.0
COL.COLO4_10812 Corchorus olitorius HOM05D007467 ORTHO05D009441 1.2e-40 171.0 204 50.5
Gorai.008G259400 Gossypium raimondii HOM05D007467 ORTHO05D009441 1.2e-40 171.0 271 44.6
Gohir.D12G242100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 1.6e-40 170.6 286 43.7
RcHm_v2.0_Chr7g0187371 Rosa chinensis HOM05D007467 ORTHO05D009441 1.6e-40 170.6 279 45.2
MD06G1120900 Malus domestica HOM05D007467 ORTHO05D009441 2.1e-40 170.2 339 41.6
Duzib084G1076 Durio zibethinus HOM05D007467 ORTHO05D009441 2.7e-40 169.9 338 39.3
CAN.G567.94 Capsicum annuum HOM05D007467 ORTHO05D009441 3.6e-40 169.5 298 44.6
Duzib205G1912 Durio zibethinus HOM05D007467 ORTHO05D009441 1.0e-39 167.9 350 43.4
Potri.001G082600 Populus trichocarpa HOM05D007467 ORTHO05D009441 3.9e-39 166.0 341 41.9
Thecc.03G219300 Theobroma cacao HOM05D007467 ORTHO05D009441 5.2e-39 165.6 345 42.9
Peaxi162Scf00074g00113 Petunia axillaris HOM05D007467 ORTHO05D009441 6.7e-39 165.2 306 43.5
Cc08_g16860 Coffea canephora HOM05D007467 ORTHO05D009441 1.1e-38 164.5 275 45.8
QL02p027667 Quercus lobata HOM05D007467 ORTHO05D009441 2.0e-38 163.7 359 40.7
FAN04G1879 Fragaria x ananassa HOM05D007467 ORTHO05D009441 3.3e-38 162.9 307 42.7
HanXRQChr07g0192371 Helianthus annuus HOM05D007467 ORTHO05D009441 3.3e-38 162.9 271 46.5
Lsat_1_v5_gn_6_10100 Lactuca sativa HOM05D007467 ORTHO05D009441 3.3e-38 162.9 273 40.7
BcaB07g31547 Brassica carinata HOM05D007467 ORTHO05D009441 4.4e-38 162.5 219 51.6
Aqoxy7G00009 Aquilegia oxysepala HOM05D007467 ORTHO05D009441 5.7e-38 162.2 281 45.9
THA.LOC104823626 Tarenaya hassleriana HOM05D007467 ORTHO05D009441 7.4e-38 161.8 276 46.4
FAN13G1608 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.7e-37 160.6 300 42.7
CSS0030138 Camellia sinensis var. sinensis HOM05D007467 ORTHO05D009441 2.2e-37 160.2 327 41.6
DCAR_006558 Daucus carota HOM05D007467 ORTHO05D009441 3.7e-37 159.5 315 37.5
FvH4_5g10770 Fragaria vesca HOM05D007467 ORTHO05D009441 3.7e-37 159.5 289 43.9
FAN18G0937 Fragaria x ananassa HOM05D007467 ORTHO05D009441 3.7e-37 159.5 289 43.9
MSTRG.13707 Avicennia marina HOM05D007467 ORTHO05D009441 6.3e-37 158.7 326 44.2
FAN08G2920 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.1e-36 157.9 289 44.3
Atru.chr9.1852 Acer truncatum HOM05D007467 ORTHO05D009441 1.8e-36 157.1 308 42.2
Ciclev10020958m.g Citrus clementina HOM05D007467 ORTHO05D009441 1.8e-36 157.1 334 41.9
GSVIVG01019666001 Vitis vinifera HOM05D007467 ORTHO05D009441 1.8e-36 157.1 201 56.7
PGSC0003DMG400012234 Solanum tuberosum HOM05D007467 ORTHO05D009441 4.1e-36 156.0 304 42.1
Oeu013372.1 Olea europaea HOM05D007467 ORTHO05D009441 1.2e-35 154.5 313 41.9
TAR636G1420 Trochodendron aralioides HOM05D007467 ORTHO05D009441 1.6e-35 154.1 290 37.9
Gohir.A09G188250 Gossypium hirsutum HOM05D007467 ORTHO05D009441 4.5e-35 152.5 266 45.9
CANSAT21G0614 Cannabis sativa HOM05D007467 ORTHO05D009441 1.7e-34 150.6 298 41.9
ECA233G1457 Erigeron canadensis HOM05D007467 ORTHO05D009441 2.2e-34 150.2 296 40.5
Lj2P155T22 Lonicera japonica HOM05D007467 ORTHO05D009441 2.9e-34 149.8 252 48.0
CiPaw.11G111200 Carya illinoinensis HOM05D007467 ORTHO05D009441 3.8e-34 149.4 197 56.9
Gorai.006G205400 Gossypium raimondii HOM05D007467 ORTHO05D009441 3.8e-34 149.4 269 43.1
Sabra01G0059300 Salix brachista HOM05D007467 ORTHO05D009441 3.8e-34 149.4 323 39.3
MD14G1137500 Malus domestica HOM05D007467 ORTHO05D009441 5.0e-34 149.1 327 35.2
Gohir.D09G183100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 1.1e-33 147.9 269 42.8
Prupe.5G131500 Prunus persica HOM05D007467 ORTHO05D009441 1.5e-33 147.5 362 39.2
Sopen08g031410 Solanum pennellii HOM05D007467 ORTHO05D009441 3.2e-33 146.4 241 48.1
Cfa011912 Carpinus fangiana HOM05D007467 ORTHO05D009441 4.2e-33 146.0 345 40.0
Nn1g00417 Nelumbo nucifera HOM05D007467 ORTHO05D009441 4.2e-33 146.0 301 36.5
Rhsim02G0253000 Rhododendron simsii HOM05D007467 ORTHO05D009441 5.5e-33 145.6 236 46.6
TWI60G0745 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 1.6e-32 144.1 328 39.3
Haze_09186 Corylus avellana HOM05D007467 ORTHO05D009441 2.1e-32 143.7 340 41.2
Dinv18747 Davidia involucrata HOM05D007467 ORTHO05D009441 2.7e-32 143.3 258 45.7
Nitab4.5_0002720g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 3.6e-32 142.9 242 46.7
vmacro11497 Vaccinium macrocarpon HOM05D007467 ORTHO05D009441 2.3e-31 140.2 265 44.5
Sabra03G0107500 Salix brachista HOM05D007467 ORTHO05D009441 4.0e-31 139.4 332 39.2
Solyc08g083220.1 Solanum lycopersicum HOM05D007467 ORTHO05D009441 4.0e-31 139.4 239 46.0
MBI04_g15581_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 5.2e-31 139.0 201 43.3
MBI04_g43054_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 5.2e-31 139.0 201 43.3
Nitab4.5_0008141g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 5.2e-31 139.0 242 45.9
PGR042G1595 Punica granatum HOM05D007467 ORTHO05D009441 8.8e-31 138.3 310 39.7
Hma1.2p1_0456F.1_g156740 Hydrangea macrophylla HOM05D007467 ORTHO05D009441 1.2e-30 137.9 286 41.3
Oeu042839.1 Olea europaea HOM05D007467 ORTHO05D009441 2.6e-30 136.7 302 40.7
Eucgr.E01052 Eucalyptus grandis HOM05D007467 ORTHO05D009441 2.2e-29 133.7 361 35.7
TWI15G0957 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 6.3e-29 132.1 332 33.4
TAR629G1879 Trochodendron aralioides HOM05D007467 ORTHO05D009441 4.1e-28 129.4 290 40.7
Potri.003G147900 Populus trichocarpa HOM05D007467 ORTHO05D009441 1.0e-26 124.8 253 43.9
SGA_v2.0_scaffold267G46175 Striga asiatica HOM05D007467 ORTHO05D009441 1.9e-25 120.6 282 40.1
PSO782G5165 Papaver somniferum HOM05D007467 ORTHO05D009441 2.1e-24 117.1 300 38.3
PSO478G5135 Papaver somniferum HOM05D007467 ORTHO05D009441 3.0e-23 113.2 298 35.6
Sed0003485 Sechium edule HOM05D007467 ORTHO05D009441 8.8e-23 111.7 276 39.5
MBI12_g21574_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 1.5e-22 110.9 204 45.6
Nn3g18852 Nelumbo nucifera HOM05D007467 ORTHO05D009441 1.7e-21 107.5 283 37.5
ClCG01G001480 Citrullus lanatus HOM05D007467 ORTHO05D009441 2.2e-21 107.1 241 41.1
CDE02G3312 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 6.3e-21 105.5 286 32.2
CsaV3_5G001620 Cucumis sativus L. HOM05D007467 ORTHO05D009441 6.3e-21 105.5 243 41.2
Oeu022032.1 Olea europaea HOM05D007467 ORTHO05D009441 1.1e-20 104.8 125 52.8
MELO3C005789.2 Cucumis melo HOM05D007467 ORTHO05D009441 4.1e-20 102.8 241 41.5
Zm00001eb023700 Zea mays HOM05D007467 ORTHO05D009441 1.2e-19 101.3 271 36.9
AUR62007067 Chenopodium quinoa HOM05D007467 ORTHO05D009441 4.2e-17 92.8 231 32.9
ATR0579G156 Amborella trichopoda HOM05D007467 ORTHO05D009441 1.8e-15 87.4 233 28.8
AUR62019932 Chenopodium quinoa HOM05D007467 ORTHO05D009441 1.2e-14 84.7 245 31.8
PGSC0003DMG400013732 Solanum tuberosum HOM05D007467 ORTHO05D009441 1.4e-12 77.8 51 68.6
EL10Ac5g12411 Beta vulgaris HOM05D007467 ORTHO05D009441 1.0e-10 71.6 185 34.1
Os10g0562600 Oryza sativa ssp. japonica HOM05D007467 ORTHO05D009441 2.3e-10 70.5 213 35.2
Actinidia22211 Actinidia chinensis HOM05D007467 ORTHO05D009441 2.9e-10 70.1 72 54.2
Ah.12g053280 Amaranthus hybridus HOM05D007467 ORTHO05D009441 5.0e-10 69.3 285 31.2
CDE11G0649 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 6.1e-08 62.4 231 26.4
Sed0003386 Sechium edule HOM05D002166 ORTHO05D002634 8.0e-08 62.0 134 36.6
Dinv40752 Davidia involucrata HOM05D002166 ORTHO05D002634 1.8e-07 60.8 111 43.2
Zm00001eb070190 Zea mays HOM05D002166 ORTHO05D002634 1.8e-07 60.8 135 35.6
Zm00001eb431290 Zea mays HOM05D002166 ORTHO05D002634 2.3e-07 60.5 129 36.4
Glyma.02G290700 Glycine max HOM05D002166 ORTHO05D002634 3.1e-07 60.1 131 37.4
FvH4_3g22650 Fragaria vesca HOM05D002166 ORTHO05D002634 8.9e-07 58.5 158 36.7
FAN16G1047 Fragaria x ananassa HOM05D002166 ORTHO05D002634 8.9e-07 58.5 158 36.7
Prupe.4G212500 Prunus persica HOM05D002166 ORTHO05D002634 8.9e-07 58.5 127 38.6
HPP92_016529 Vanilla planifolia HOM05D002166 ORTHO05D002634 8.9e-07 58.5 145 34.5
CDE02G2372 Ceratophyllum demersum HOM05D002166 ORTHO05D002634 1.2e-06 58.2 136 35.3
ClCG00G001110 Citrullus lanatus HOM05D007467 ORTHO05D009441 1.2e-06 58.2 138 42.8
FAN21G3541 Fragaria x ananassa HOM05D002166 ORTHO05D002634 1.2e-06 58.2 158 34.2
HanXRQChr05g0159381 Helianthus annuus HOM05D002166 ORTHO05D002634 1.2e-06 58.2 152 33.6
Lsat_1_v5_gn_5_4021 Lactuca sativa HOM05D002166 ORTHO05D002634 1.2e-06 58.2 180 30.0
LjContig00272g0027317 Lotus japonicus HOM05D002166 ORTHO05D002634 1.2e-06 58.2 202 37.6
MD03G1201300 Malus domestica HOM05D002166 ORTHO05D002634 1.2e-06 58.2 158 34.8
arahy.Tifrunner.gnm1.ann1.WSU996 Arachis hypogaea HOM05D002166 ORTHO05D002634 1.5e-06 57.8 136 33.8
BraA06t23502Z Brassica rapa HOM05D002166 ORTHO05D002634 1.5e-06 57.8 158 31.0
Glyma.14G024000 Glycine max HOM05D002166 ORTHO05D002634 1.5e-06 57.8 131 36.6
Lj8A169T85 Lonicera japonica HOM05D002166 ORTHO05D002634 1.5e-06 57.8 158 32.3
Lalb_Chr04g0248451 Lupinus albus HOM05D002166 ORTHO05D002634 1.5e-06 57.8 233 30.5
arahy.Tifrunner.gnm1.ann1.R34EKV Arachis hypogaea HOM05D002166 ORTHO05D002634 2.0e-06 57.4 131 35.1
HanXRQChr08g0233861 Helianthus annuus HOM05D002166 ORTHO05D002634 2.0e-06 57.4 178 30.9
AL3G34070 Arabidopsis lyrata HOM05D002166 ORTHO05D002634 2.6e-06 57.0 158 29.7
MELO3C025366.2 Cucumis melo HOM05D002166 ORTHO05D002634 2.6e-06 57.0 150 34.0
MD11G1218700 Malus domestica HOM05D002166 ORTHO05D002634 2.6e-06 57.0 155 34.2
RcHm_v2.0_Chr5g0039421 Rosa chinensis HOM05D002166 ORTHO05D002634 2.6e-06 57.0 158 33.5
SEGI_05627 Sequoiadendron giganteum HOM05D002166 ORTHO05D002634 2.6e-06 57.0 164 37.8
FAN25G0402 Fragaria x ananassa HOM05D002166 ORTHO05D002634 3.4e-06 56.6 158 34.8
QL08p010329 Quercus lobata HOM05D002166 ORTHO05D002634 3.4e-06 56.6 131 35.9
CSS0030432 Camellia sinensis var. sinensis HOM05D002166 ORTHO05D002634 4.4e-06 56.2 131 35.9
Os04g0625000 Oryza sativa ssp. japonica HOM05D002166 ORTHO05D002634 4.4e-06 56.2 124 35.5
Psat2g011000 Pisum sativum HOM05D002166 ORTHO05D002634 4.4e-06 56.2 166 32.5
CSS0020014 Camellia sinensis var. sinensis HOM05D002166 ORTHO05D002634 5.8e-06 55.8 158 32.9
Sed0003279 Sechium edule HOM05D002166 ORTHO05D002634 5.8e-06 55.8 253 26.5
Sed0016610 Sechium edule HOM05D002166 ORTHO05D002634 5.8e-06 55.8 134 35.1
BcaC05g28321 Brassica carinata HOM05D002166 ORTHO05D002634 7.5e-06 55.5 131 45.8
C05p43980 Brassica napus HOM05D002166 ORTHO05D002634 7.5e-06 55.5 131 45.8
BolC5t33116H Brassica oleracea HOM05D002166 ORTHO05D002634 7.5e-06 55.5 131 45.8
CARHR096000 Cardamine hirsuta HOM05D002166 ORTHO05D002634 7.5e-06 55.5 158 29.7
Ca_06318_v3 Cicer arietinum L. HOM05D002166 ORTHO05D002634 7.5e-06 55.5 157 33.8
Ca_30807_v3 Cicer arietinum L. HOM05D002166 ORTHO05D002634 7.5e-06 55.5 157 33.8
THA.LOC104817854 Tarenaya hassleriana HOM05D002166 ORTHO05D002634 7.5e-06 55.5 131 45.0
TPR.G16591 Trifolium pratense HOM05D002166 ORTHO05D002634 7.5e-06 55.5 159 32.7
arahy.Tifrunner.gnm1.ann1.2WUV3V Arachis hypogaea HOM05D002166 ORTHO05D002634 9.8e-06 55.1 176 33.0
arahy.Tifrunner.gnm1.ann1.MVDX5J Arachis hypogaea HOM05D002166 ORTHO05D002634 9.8e-06 55.1 176 33.0
MELO3C013168.2 Cucumis melo HOM05D002166 ORTHO05D002634 9.8e-06 55.1 129 36.4
Medtr3g051430 Medicago truncatula HOM05D002166 ORTHO05D002634 9.8e-06 55.1 131 39.7
Oeu042937.1 Olea europaea HOM05D002166 ORTHO05D002634 9.8e-06 55.1 129 36.4


User provided reference genes

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