Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22485 Brassica carinata HOM05D010326 ORTHO05D012728 2.3e-84 315.5 156 100.0
BolC9t53784H Brassica oleracea HOM05D010326 ORTHO05D012728 1.4e-76 289.7 170 87.6
C07p50820 Brassica napus HOM05D010326 ORTHO05D012728 2.6e-75 285.4 168 87.5
BcaC05g28658 Brassica carinata HOM05D010326 ORTHO05D012728 8.1e-61 237.3 170 75.9
Carub.0011s0008 Capsella rubella HOM05D010326 ORTHO05D012728 1.0e-55 220.3 166 68.7
A10p19220 Brassica napus HOM05D010326 ORTHO05D012728 2.8e-53 212.2 136 81.6
BcaC01g01289 Brassica carinata HOM05D010326 ORTHO05D012728 9.0e-52 207.2 170 67.1
AT2G14755 Arabidopsis thaliana HOM05D010326 ORTHO05D012728 4.6e-40 168.3 131 65.6
THA.LOC104818562 Tarenaya hassleriana HOM05D010326 ORTHO05D000285 2.4e-36 156.0 166 48.8
BcaB08g34536 Brassica carinata HOM05D010326 ORTHO05D012728 1.2e-32 143.7 119 65.5
AL2G13740 Arabidopsis lyrata HOM05D010326 ORTHO05D012728 5.1e-31 138.3 97 71.1
BcaC01g01183 Brassica carinata HOM05D010326 ORTHO05D012728 2.0e-30 136.3 155 54.2
Aa31LG3G5580 Aethionema arabicum HOM05D010326 ORTHO05D012728 9.1e-28 127.5 101 62.4
BolC9t54778H Brassica oleracea HOM05D010326 ORTHO05D012728 1.5e-27 126.7 59 100.0
Carub.0008s0764 Capsella rubella HOM05D010326 ORTHO05D033154 7.2e-25 117.9 87 67.8
BolC5t33502H Brassica oleracea HOM05D010326 ORTHO05D012728 3.0e-23 112.5 58 91.4
BcaB01g02897 Brassica carinata HOM05D006735 ORTHO05D009558 5.2e-15 85.1 140 33.6
BcaC07g38146 Brassica carinata HOM05D006735 ORTHO05D009558 9.7e-14 80.9 139 31.7
BcaC09g51566 Brassica carinata HOM05D006735 ORTHO05D009558 1.7e-13 80.1 140 30.7
A01p26730 Brassica napus HOM05D006735 ORTHO05D009558 1.7e-13 80.1 140 30.7
BcaC05g29603 Brassica carinata HOM05D062484 ORTHO05D039140 2.2e-13 79.7 122 35.2
BcaC08g45821 Brassica carinata HOM05D006735 ORTHO05D009558 2.2e-13 79.7 140 30.7
A09p42550 Brassica napus HOM05D006735 ORTHO05D009558 2.2e-13 79.7 135 31.9
BcaC09g51945 Brassica carinata HOM05D006735 ORTHO05D009558 3.7e-13 79.0 140 31.4
BcaC03g15864 Brassica carinata HOM05D006735 ORTHO05D009558 4.8e-13 78.6 140 30.7
BcaC04g20691 Brassica carinata HOM05D006735 ORTHO05D009558 1.8e-12 76.6 139 30.2
A07p02010 Brassica napus HOM05D006735 ORTHO05D009558 1.6e-11 73.6 142 30.3
C08p11240 Brassica napus HOM05D006735 ORTHO05D009558 1.6e-11 73.6 140 29.3
C05p59180 Brassica napus HOM05D062484 ORTHO05D039140 2.0e-11 73.2 124 37.1
BcaC03g18043 Brassica carinata HOM05D006735 ORTHO05D009558 2.6e-11 72.8 135 30.4
A08p25200 Brassica napus HOM05D006735 ORTHO05D009558 7.7e-11 71.2 85 40.0
C01p49020 Brassica napus HOM05D006735 ORTHO05D009558 7.7e-11 71.2 85 40.0
C03p60980 Brassica napus HOM05D006735 ORTHO05D009558 1.0e-10 70.9 140 29.3
BcaC01g03559 Brassica carinata HOM05D006735 ORTHO05D009558 1.3e-10 70.5 135 29.6
THA.LOC104827195 Tarenaya hassleriana HOM05D006735 ORTHO05D009558 1.3e-10 70.5 136 31.6
BolC2t09633H Brassica oleracea HOM05D006735 ORTHO05D009558 2.2e-10 69.7 83 39.8
CiPaw.10G065300 Carya illinoinensis HOM05D000876 ORTHO05D000285 3.8e-10 68.9 148 27.0
BcaC09g48693 Brassica carinata HOM05D006735 ORTHO05D009558 6.5e-10 68.2 83 38.6
C05p19810 Brassica napus HOM05D006735 ORTHO05D009558 6.5e-10 68.2 85 38.8
QL04p079613 Quercus lobata HOM05D000876 ORTHO05D000285 3.2e-09 65.9 164 25.6
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 4.2e-09 65.5 160 26.2
Atru.chr2.2393 Acer truncatum HOM05D000034 ORTHO05D000037 5.5e-09 65.1 147 27.2
BcaC01g00870 Brassica carinata HOM05D006735 ORTHO05D009558 5.5e-09 65.1 139 29.5
BraA03t15421Z Brassica rapa HOM05D028599 ORTHO05D027333 9.4e-09 64.3 80 41.2
CiPaw.15G017800 Carya illinoinensis HOM05D000876 ORTHO05D000285 2.1e-08 63.2 152 25.0
CSS0021579 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 2.7e-08 62.8 142 27.5
Atru.chr11.998 Acer truncatum HOM05D000876 ORTHO05D000285 4.7e-08 62.0 147 27.2
BcaC01g02745 Brassica carinata HOM05D006735 ORTHO05D009558 1.0e-07 60.8 82 36.6
Gorai.007G232100 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.0e-07 60.8 125 27.2
CSS0033511 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 1.4e-07 60.5 163 26.4
CiPaw.04G117800 Carya illinoinensis HOM05D000876 ORTHO05D000285 1.8e-07 60.1 136 25.0
C04p61000 Brassica napus HOM05D006735 ORTHO05D009558 3.0e-07 59.3 109 28.4
CANSAT78G1247 Cannabis sativa HOM05D000876 ORTHO05D000285 4.0e-07 58.9 146 25.3
CiPaw.08G099200 Carya illinoinensis HOM05D000876 ORTHO05D000285 4.0e-07 58.9 128 25.8
DCAR_031892 Daucus carota HOM05D000876 ORTHO05D000285 4.0e-07 58.9 125 28.8
Gorai.011G123600 Gossypium raimondii HOM05D000876 ORTHO05D000285 5.2e-07 58.5 151 26.5
Gorai.012G085300 Gossypium raimondii HOM05D000876 ORTHO05D000285 5.2e-07 58.5 141 26.2
BolC2t07818H Brassica oleracea HOM05D006735 ORTHO05D009558 6.7e-07 58.2 84 35.7
AT2G19365 Arabidopsis thaliana HOM05D006735 ORTHO05D009558 8.8e-07 57.8 68 41.2
CiPaw.04G143900 Carya illinoinensis HOM05D000876 ORTHO05D000285 1.2e-06 57.4 128 26.6
Glyma.04G129400 Glycine max HOM05D000876 ORTHO05D000285 1.2e-06 57.4 127 25.2
Gorai.006G093000 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.2e-06 57.4 148 26.4
Gorai.008G062400 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.5e-06 57.0 172 24.4
Carub.0003s1061 Capsella rubella HOM05D000876 ORTHO05D000285 2.0e-06 56.6 154 27.9
Glyma.05G069200 Glycine max HOM05D000876 ORTHO05D000285 2.0e-06 56.6 127 23.6
C05p34980 Brassica napus HOM05D012420 ORTHO05D019981 2.6e-06 56.2 136 26.5
CSS0029673 Camellia sinensis var. sinensis HOM05D010762 ORTHO05D000285 2.6e-06 56.2 150 24.7
Gorai.013G171200 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.6e-06 56.2 172 25.0
C09p40570 Brassica napus HOM05D006735 ORTHO05D009558 3.3e-06 55.8 109 27.5
Gorai.006G019900 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.3e-06 55.8 148 25.7
Gorai.008G247700 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.3e-06 55.8 145 26.2
A07p01920 Brassica napus HOM05D006735 ORTHO05D009558 4.4e-06 55.5 138 22.5
C05p42930 Brassica napus HOM05D006735 ORTHO05D009558 4.4e-06 55.5 80 28.8
C07p37620 Brassica napus HOM05D006735 ORTHO05D010262 4.4e-06 55.5 80 32.5
BolC5t33020H Brassica oleracea HOM05D006735 ORTHO05D009558 4.4e-06 55.5 80 28.8
Glyma.15G226650 Glycine max HOM05D000876 ORTHO05D000285 4.4e-06 55.5 127 22.8
Gohir.D08G116700 Gossypium hirsutum HOM05D000876 ORTHO05D000285 4.4e-06 55.5 145 26.2
BcaC04g20609 Brassica carinata HOM05D028599 ORTHO05D027333 5.7e-06 55.1 84 36.9
C03p79750 Brassica napus HOM05D010326 ORTHO05D012728 5.7e-06 55.1 35 71.4
BolC9t57034H Brassica oleracea HOM05D028599 ORTHO05D027333 5.7e-06 55.1 84 36.9
Gorai.004G036600 Gossypium raimondii HOM05D000876 ORTHO05D000285 5.7e-06 55.1 148 25.7
Gorai.011G122600 Gossypium raimondii HOM05D000876 ORTHO05D000285 5.7e-06 55.1 148 25.7
Medtr1g080080 Medicago truncatula HOM05D000876 ORTHO05D000285 5.7e-06 55.1 144 24.3
Medtr2g018710 Medicago truncatula HOM05D000876 ORTHO05D000285 5.7e-06 55.1 144 24.3
Medtr2g086350 Medicago truncatula HOM05D000876 ORTHO05D000285 5.7e-06 55.1 144 24.3
CANSAT01G0041 Cannabis sativa HOM05D000876 ORTHO05D000285 7.5e-06 54.7 161 23.6
Glyma.06G250600 Glycine max HOM05D000876 ORTHO05D000285 7.5e-06 54.7 127 22.8
Glyma.18G094800 Glycine max HOM05D000876 ORTHO05D000285 7.5e-06 54.7 127 22.8
CANSAT25G2261 Cannabis sativa HOM05D000876 ORTHO05D000285 9.7e-06 54.3 160 25.0


User provided reference genes

Program Settings