Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 7.7e-225 783.5 395 100.0
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 7.7e-225 783.5 395 100.0
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 4.4e-220 767.7 395 97.7
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 6.5e-216 753.8 395 96.5
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 1.6e-214 749.2 395 95.9
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 3.2e-207 724.9 398 94.0
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 3.4e-204 714.9 390 91.5
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 3.1e-202 708.4 407 89.2
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 1.2e-198 696.4 405 87.9
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 1.3e-195 686.4 405 86.4
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 4.6e-193 677.9 401 85.3
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 1.7e-192 676.0 385 89.1
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 1.3e-187 659.8 403 81.1
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 1.5e-180 636.3 401 81.8
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 1.3e-179 633.3 407 81.6
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 6.6e-176 620.9 401 78.1
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 3.3e-175 618.6 423 77.1
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 5.6e-175 617.8 395 78.2
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 2.1e-174 615.9 395 77.5
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 1.4e-173 613.2 356 83.1
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 1.4e-173 613.2 395 77.5
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 3.1e-173 612.1 397 76.3
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 5.2e-173 611.3 380 78.2
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 8.9e-173 610.5 347 85.6
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 2.0e-172 609.4 398 76.4
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 1.3e-171 606.7 395 76.5
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 4.9e-171 604.7 421 73.2
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 8.4e-171 604.0 397 75.8
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 2.4e-170 602.4 402 73.9
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 2.4e-170 602.4 356 80.6
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 4.1e-170 601.7 354 82.2
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.2e-169 600.1 402 73.4
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 2.7e-169 599.0 404 73.3
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 2.7e-169 599.0 385 75.8
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 1.0e-168 597.0 390 74.9
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 1.3e-168 596.7 387 75.7
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 2.3e-168 595.9 393 74.6
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 1.1e-167 593.6 390 73.8
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 2.5e-167 592.4 337 85.2
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 4.3e-167 591.7 390 74.4
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 7.3e-167 590.9 400 73.8
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 9.6e-167 590.5 391 74.9
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.2e-166 590.1 361 79.2
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 4.7e-166 588.2 314 92.4
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 4.7e-166 588.2 406 72.7
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 6.2e-166 587.8 399 73.2
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 6.2e-166 587.8 398 73.4
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 4.0e-165 585.1 403 72.2
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 1.2e-164 583.6 350 79.4
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 2.6e-164 582.4 396 73.0
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 2.6e-164 582.4 356 77.8
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 2.2e-163 579.3 350 79.1
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 6.4e-163 577.8 409 70.7
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 6.4e-163 577.8 410 70.0
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 8.4e-163 577.4 356 78.4
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 1.1e-162 577.0 400 71.2
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 1.1e-162 577.0 393 72.5
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 5.4e-162 574.7 402 72.4
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 1.6e-161 573.2 390 74.1
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 2.1e-161 572.8 347 79.5
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 2.1e-161 572.8 369 73.4
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 3.5e-161 572.0 395 73.2
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 3.5e-161 572.0 353 78.8
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 7.8e-161 570.9 349 77.1
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 7.8e-161 570.9 350 77.1
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 1.0e-160 570.5 368 76.4
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 1.3e-160 570.1 392 71.4
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 1.3e-160 570.1 392 72.4
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 1.7e-160 569.7 369 73.4
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 5.1e-160 568.2 348 78.7
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 8.7e-160 567.4 389 71.5
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 8.7e-160 567.4 401 71.6
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 1.9e-159 566.2 370 73.5
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 2.5e-159 565.8 403 70.7
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 3.3e-159 565.5 404 71.3
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 4.3e-159 565.1 408 70.8
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.3e-158 563.5 406 71.2
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 2.1e-158 562.8 350 76.6
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 2.8e-158 562.4 405 69.9
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 4.8e-158 561.6 376 73.1
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 6.2e-158 561.2 339 79.9
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 1.4e-157 560.1 349 76.5
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 1.8e-157 559.7 405 69.4
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 2.4e-157 559.3 380 73.2
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 1.2e-156 557.0 356 75.3
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 1.5e-156 556.6 392 69.6
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 3.4e-156 555.4 343 77.8
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 9.9e-156 553.9 405 70.4
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 2.9e-155 552.4 395 70.4
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 4.9e-155 551.6 375 72.8
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 6.4e-155 551.2 395 70.4
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 7.1e-154 547.7 327 80.1
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 1.2e-153 547.0 354 76.0
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 6.0e-153 544.7 438 64.6
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 1.8e-152 543.1 347 77.5
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 4.3e-151 538.5 395 67.8
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 3.7e-150 535.4 346 75.1
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 1.1e-149 533.9 377 70.0
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 2.4e-149 532.7 344 75.6
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 5.3e-149 531.6 344 73.3
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 6.9e-149 531.2 389 68.1
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 3.4e-148 528.9 314 80.3
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 4.5e-148 528.5 382 69.9
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 9.9e-148 527.3 406 67.7
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 1.9e-146 523.1 352 71.3
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 3.5e-145 518.8 348 72.4
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 5.1e-144 515.0 419 65.2
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 6.7e-144 514.6 366 71.0
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 7.4e-143 511.1 343 71.7
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 6.2e-142 508.1 344 70.3
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 1.8e-141 506.5 461 59.2
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 6.9e-141 504.6 366 69.4
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 2.5e-138 496.1 308 82.8
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 3.9e-136 488.8 573 48.5
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.5e-135 486.9 393 65.6
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 1.2e-132 477.2 374 63.9
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.7e-131 473.4 292 79.1
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 9.4e-130 467.6 346 65.9
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.0e-112 411.0 374 59.6
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 3.3e-74 283.1 194 73.7
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 2.4e-69 266.9 147 83.0
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 7.8e-68 261.9 373 44.0
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 2.1e-60 237.3 214 56.1
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 1.0e-59 235.0 301 48.2
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 2.4e-56 223.8 190 64.2
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 3.8e-54 216.5 180 61.7
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 2.4e-45 187.2 112 81.2
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 4.9e-38 162.9 112 71.4
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.3e-33 148.3 81 80.2
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 3.4e-31 140.2 352 29.0
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 1.9e-26 124.4 84 70.2
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 2.8e-25 120.6 80 68.8
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 6.1e-20 102.8 53 90.6
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 3.3e-10 70.5 95 44.2
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 5.7e-10 69.7 45 68.9
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 2.4e-08 64.3 69 44.9


User provided reference genes

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