Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 5.9e-272 940.3 477 100.0
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 3.6e-269 931.0 479 99.6
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 6.6e-263 910.2 477 96.6
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 2.3e-260 901.7 482 97.1
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 8.9e-260 899.8 479 96.2
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 8.9e-260 899.8 479 96.2
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 4.9e-250 867.5 477 92.2
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 1.7e-242 842.4 475 90.3
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 8.7e-239 830.1 466 90.3
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 2.2e-234 815.5 467 89.1
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 4.9e-234 814.3 471 88.5
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 1.8e-223 779.2 491 81.3
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 1.5e-219 766.1 469 82.3
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 3.3e-198 695.3 474 74.7
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 1.6e-187 659.8 471 71.5
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 6.1e-184 647.9 471 70.9
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 3.0e-183 645.6 459 71.0
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 2.6e-182 642.5 458 69.7
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 2.0e-179 632.9 468 69.4
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 2.2e-178 629.4 467 69.0
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 3.8e-178 628.6 455 69.2
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 1.1e-177 627.1 444 71.4
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 1.1e-177 627.1 455 70.5
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 1.9e-177 626.3 451 69.0
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 2.5e-177 625.9 456 69.7
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 2.5e-177 625.9 450 69.8
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 7.2e-177 624.4 456 70.2
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 9.4e-177 624.0 469 68.2
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 9.4e-177 624.0 458 69.2
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 2.7e-176 622.5 455 69.9
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 3.6e-176 622.1 470 68.5
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 4.7e-176 621.7 451 68.7
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 1.8e-175 619.8 463 70.0
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 1.8e-175 619.8 455 69.5
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 1.8e-175 619.8 462 68.0
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 1.8e-175 619.8 482 65.8
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 3.0e-175 619.0 462 68.2
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 4.0e-175 618.6 442 70.8
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 4.0e-175 618.6 462 68.6
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 4.0e-175 618.6 450 69.6
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 6.8e-175 617.8 456 68.6
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 6.8e-175 617.8 453 69.1
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 1.5e-174 616.7 468 68.6
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 1.3e-173 613.6 454 68.7
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 8.3e-173 610.9 466 67.6
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 4.1e-172 608.6 450 68.7
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 4.1e-172 608.6 459 69.5
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 9.1e-172 607.4 459 69.5
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 2.0e-171 606.3 462 66.7
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 2.0e-171 606.3 440 70.5
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 5.9e-171 604.7 459 69.3
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 5.9e-171 604.7 455 67.0
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 1.0e-170 604.0 493 63.5
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 3.8e-170 602.1 457 66.3
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 8.5e-170 600.9 462 68.2
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 2.5e-169 599.4 462 68.0
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 5.5e-169 598.2 461 68.1
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 1.2e-168 597.0 460 67.4
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 1.6e-168 596.7 448 67.6
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 1.0e-167 594.0 465 64.7
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 1.4e-167 593.6 463 65.9
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 1.8e-167 593.2 465 64.5
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 2.3e-167 592.8 460 67.2
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 4.0e-167 592.0 463 65.7
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 5.2e-167 591.7 462 65.6
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 3.4e-166 589.0 454 67.8
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 1.7e-162 576.6 459 65.1
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 1.7e-162 576.6 459 64.5
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 8.6e-162 574.3 430 69.3
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 1.2e-160 570.5 457 64.3
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 1.6e-160 570.1 422 70.1
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 8.9e-159 564.3 447 63.1
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 2.4e-156 556.2 554 55.2
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 4.1e-156 555.4 448 62.7
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 2.5e-153 546.2 456 62.5
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 5.6e-153 545.0 455 63.1
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 3.6e-152 542.3 438 64.4
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 4.4e-150 535.4 424 66.7
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 1.3e-149 533.9 312 87.2
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 6.4e-149 531.6 452 60.4
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 4.1e-148 528.9 440 63.6
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 3.5e-147 525.8 472 56.8
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 6.0e-147 525.0 368 72.6
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 5.0e-146 521.9 527 55.8
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 2.4e-140 503.1 455 59.1
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 9.5e-137 491.1 462 58.0
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 5.2e-135 485.3 465 58.1
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 2.6e-134 483.0 370 65.7
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 6.6e-130 468.4 457 55.6
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.9e-129 466.8 373 65.4
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 3.3e-129 466.1 470 57.7
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 4.3e-129 465.7 411 62.3
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 3.6e-128 462.6 502 53.8
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 9.9e-126 454.5 463 55.3
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 2.1e-123 446.8 340 67.1
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 1.4e-119 434.1 500 51.0
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 2.4e-119 433.3 319 69.3
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 6.9e-119 431.8 355 62.8
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 2.4e-116 423.3 456 53.1
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 1.8e-114 417.2 466 48.7
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 3.6e-112 409.5 331 62.8
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 3.4e-110 402.9 446 52.0
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 5.8e-110 402.1 340 63.5
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 9.9e-110 401.4 461 48.4
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 2.0e-102 377.1 437 50.6
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 2.0e-102 377.1 268 70.5
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 5.5e-100 369.0 481 44.5
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 3.3e-97 359.8 467 45.8
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 4.2e-92 342.8 304 56.6
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 1.2e-91 341.3 266 65.4
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 6.7e-82 308.9 363 47.7
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 2.8e-80 303.5 302 56.3
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 3.5e-70 270.0 283 54.8
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 4.7e-67 259.6 756 28.2
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 2.2e-61 240.7 452 35.8
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 2.2e-56 224.2 427 37.0
Ca_20251_v3 Cicer arietinum L. HOM05D006075 ORTHO05D007527 9.1e-55 218.8 155 69.7
C09p15950 Brassica napus HOM05D006075 ORTHO05D007527 2.1e-43 181.0 99 88.9
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 5.7e-41 172.9 175 58.9
TAR636G1294 Trochodendron aralioides HOM05D006075 ORTHO05D007527 6.4e-40 169.5 153 56.9
BolC9t54506H Brassica oleracea HOM05D006075 ORTHO05D007527 1.7e-37 161.4 116 74.1
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 8.6e-37 159.1 451 29.3
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 2.3e-29 134.4 175 46.9
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 1.5e-28 131.7 520 27.1
TAR636G2798 Trochodendron aralioides HOM05D006075 ORTHO05D007527 2.0e-25 121.3 67 83.6
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.9e-24 116.7 108 60.2
ATR0322G060 Amborella trichopoda HOM05D006075 ORTHO05D007527 1.4e-23 115.2 90 62.2
Cre03.g150400 Chlamydomonas reinhardtii HOM05D006075 ORTHO05D007527 2.7e-14 84.3 222 33.8
Pp3c15_22645 Physcomitrium patens HOM05D006075 ORTHO05D007527 1.2e-09 68.9 113 40.7
Actinidia27405 Actinidia chinensis HOM05D006075 ORTHO05D007527 3.4e-09 67.4 64 57.8
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 3.5e-06 57.4 44 61.4


User provided reference genes

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