Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 2.3e-115 419.1 234 100.0
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 1.1e-114 416.8 234 99.1
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 1.5e-114 416.4 234 99.6
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 6.2e-113 411.0 234 98.7
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 6.2e-113 411.0 234 98.7
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 1.3e-107 393.3 236 95.3
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 7.8e-100 367.5 236 88.6
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 3.3e-98 362.1 235 86.8
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 1.2e-97 360.1 237 87.3
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 2.1e-97 359.4 235 85.1
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 8.1e-97 357.5 235 86.0
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 8.6e-91 337.4 236 83.5
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 1.6e-89 333.2 235 82.1
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 1.5e-82 310.1 237 75.1
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.9e-82 309.7 240 75.4
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 2.7e-76 289.3 238 71.8
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 5.6e-74 281.6 238 69.3
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 1.3e-73 280.4 237 71.3
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 1.6e-73 280.0 238 71.8
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.8e-73 279.3 234 70.9
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.1e-72 277.3 239 70.3
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 6.9e-72 274.6 234 66.7
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 2.0e-71 273.1 234 66.7
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 2.6e-71 272.7 237 70.9
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 4.5e-71 271.9 237 70.5
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 1.7e-70 270.0 234 67.1
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.9e-70 269.2 240 63.3
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 3.8e-70 268.9 254 65.4
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.4e-69 266.9 234 68.8
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 1.9e-69 266.5 243 67.5
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.9e-69 266.5 235 68.5
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 3.2e-69 265.8 234 69.2
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 4.2e-69 265.4 233 69.5
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 4.2e-69 265.4 239 67.8
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 2.7e-68 262.7 235 68.1
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 6.0e-68 261.5 231 68.8
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 1.3e-67 260.4 237 62.4
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.8e-67 260.0 240 65.8
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 3.0e-67 259.2 238 68.1
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 3.0e-67 259.2 238 68.1
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 3.9e-67 258.8 242 65.3
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 3.9e-67 258.8 231 68.4
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 3.9e-67 258.8 234 67.5
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 6.7e-67 258.1 272 62.1
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 1.5e-66 256.9 238 67.6
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.5e-66 256.1 183 74.9
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.5e-66 256.1 183 74.9
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 3.3e-66 255.8 231 67.5
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 7.4e-66 254.6 245 60.8
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 7.4e-66 254.6 236 66.1
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 9.6e-66 254.2 182 80.2
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 1.3e-65 253.8 239 59.0
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.6e-65 253.4 238 66.4
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 2.1e-65 253.1 242 66.5
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 8.1e-65 251.1 229 67.2
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 1.4e-64 250.4 239 59.0
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 3.1e-64 249.2 197 74.6
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 4.0e-64 248.8 236 64.0
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 5.3e-64 248.4 188 76.6
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 9.0e-64 247.7 236 61.0
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 2.0e-63 246.5 182 78.6
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 5.8e-63 245.0 238 64.3
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 5.8e-63 245.0 238 57.1
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 1.3e-62 243.8 230 59.1
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 1.7e-62 243.4 171 80.1
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 2.2e-62 243.0 236 59.3
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 2.2e-62 243.0 238 62.2
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.9e-62 242.7 245 60.0
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 2.9e-62 242.7 239 56.9
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 3.8e-62 242.3 182 76.4
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 4.9e-62 241.9 245 56.7
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 4.9e-62 241.9 236 61.0
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 6.5e-62 241.5 235 59.1
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 8.4e-62 241.1 192 65.6
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 1.4e-61 240.4 180 76.7
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 1.4e-61 240.4 235 65.5
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 1.4e-61 240.4 224 68.8
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 4.2e-61 238.8 224 67.0
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 4.2e-61 238.8 186 74.7
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 4.2e-61 238.8 225 64.0
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 1.2e-60 237.3 234 62.0
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 1.6e-60 236.9 236 58.1
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 6.0e-60 235.0 270 51.9
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 6.0e-60 235.0 183 69.4
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.8e-59 233.4 196 63.8
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 1.8e-59 233.4 228 60.1
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 3.9e-59 232.3 183 73.8
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 3.9e-59 232.3 239 58.6
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 6.7e-59 231.5 186 72.0
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 8.7e-59 231.1 235 62.1
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 8.7e-59 231.1 235 62.1
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 4.3e-58 228.8 182 65.9
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 9.6e-58 227.6 183 66.7
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 4.8e-57 225.3 252 60.7
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 1.5e-55 220.3 216 65.7
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 2.0e-55 219.9 248 54.4
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 2.2e-54 216.5 201 62.2
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 5.0e-54 215.3 187 66.3
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 6.5e-54 214.9 252 52.0
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 1.1e-53 214.2 195 57.9
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 2.7e-52 209.5 183 64.5
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 3.7e-49 199.1 141 73.8
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 5.3e-48 195.3 308 43.2
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.2e-47 194.1 234 56.4
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.2e-47 194.1 168 63.1
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 5.0e-46 188.7 208 51.9
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.9e-45 186.8 181 56.9
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 7.2e-45 184.9 235 47.2
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 9.1e-40 167.9 130 77.7
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 1.7e-38 163.7 133 63.9
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 4.7e-36 155.6 261 47.1
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 1.0e-35 154.5 188 50.5
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.9e-35 152.5 125 65.6
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.5e-34 150.6 174 50.6
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.3e-33 147.5 96 77.1
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.8e-33 145.6 96 76.0
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.1e-32 142.9 92 77.2
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 7.7e-31 138.3 98 67.3
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 7.5e-26 121.7 72 80.6
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 8.2e-25 118.2 153 49.0
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.8e-24 117.1 199 40.7
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 3.1e-24 116.3 171 40.4
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 4.5e-23 112.5 236 35.6
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 5.9e-23 112.1 100 55.0
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 5.9e-23 112.1 236 35.2
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 2.2e-22 110.2 79 64.6
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 8.5e-22 108.2 257 32.7
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 1.5e-21 107.5 135 48.9
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 3.2e-21 106.3 220 38.6
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 4.2e-21 105.9 97 71.1
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 1.6e-20 104.0 237 35.0
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 8.3e-17 91.7 65 73.8
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.4e-16 90.9 162 38.3
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 6.5e-14 82.0 130 37.7
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.7e-09 67.4 119 38.7
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 1.7e-09 67.4 194 30.4
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 2.8e-09 66.6 109 40.4
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 3.7e-09 66.2 108 39.8
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 8.3e-09 65.1 51 66.7
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.7e-06 57.4 48 58.3
Migut.H01199 Erythranthe guttata HOM05D005346 ORTHO05D007051 6.6e-06 55.5 55 52.7


User provided reference genes

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