Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22438 Brassica carinata HOM05D013989 ORTHO05D004630 2.8e-76 288.5 141 100.0
BcaC04g22439 Brassica carinata HOM05D013989 ORTHO05D004630 2.8e-76 288.5 141 100.0
BcaC04g21462 Brassica carinata HOM05D013989 ORTHO05D004630 2.4e-72 275.4 141 96.5
BcaC01g04676 Brassica carinata HOM05D013989 ORTHO05D004630 9.2e-72 273.5 141 95.0
BcaC01g00609 Brassica carinata HOM05D013989 ORTHO05D004630 4.6e-71 271.2 141 93.6
BcaC04g20585 Brassica carinata HOM05D013989 ORTHO05D091667 6.0e-71 270.8 141 94.3
BcaC04g20466 Brassica carinata HOM05D013989 ORTHO05D094706 7.1e-64 247.3 141 88.7
BcaC05g27683 Brassica carinata HOM05D013989 ORTHO05D004630 7.1e-64 247.3 141 88.7
BcaC02g07949 Brassica carinata HOM05D013989 ORTHO05D004630 6.7e-54 214.2 141 75.9
BcaC08g46298 Brassica carinata HOM05D013989 ORTHO05D091802 1.0e-41 173.7 141 70.2
BcaC08g46297 Brassica carinata HOM05D013989 ORTHO05D094633 3.2e-40 168.7 141 68.8
BcaC04g20804 Brassica carinata HOM05D000290 ORTHO05D004630 3.3e-13 79.0 39 89.7
A10p08400 Brassica napus HOM05D000290 ORTHO05D004630 3.3e-13 79.0 39 89.7
C09p38980 Brassica napus HOM05D000290 ORTHO05D004630 3.3e-13 79.0 39 89.7
BolC9t56778H Brassica oleracea HOM05D000290 ORTHO05D004630 3.3e-13 79.0 39 89.7
BraSC37t46165Z Brassica rapa HOM05D000290 ORTHO05D004630 3.3e-13 79.0 39 89.7
AT5G50330 Arabidopsis thaliana HOM05D000290 ORTHO05D004630 4.4e-13 78.6 39 89.7
BcaB08g35409 Brassica carinata HOM05D000290 ORTHO05D004630 4.4e-13 78.6 39 89.7
AL664U10010 Arabidopsis lyrata HOM05D000290 ORTHO05D004630 5.7e-13 78.2 39 89.7
Carub.0008s1037 Capsella rubella HOM05D000290 ORTHO05D004630 5.7e-13 78.2 39 89.7
AL8G24390 Arabidopsis lyrata HOM05D000290 ORTHO05D004630 2.2e-12 76.3 39 87.2
CARHR258180 Cardamine hirsuta HOM05D000290 ORTHO05D004630 1.1e-11 73.9 39 82.1
Thhalv10013416m.g Eutrema salsugineum HOM05D000290 ORTHO05D004630 1.8e-11 73.2 39 82.1
Aa31LG3G5900 Aethionema arabicum HOM05D000290 ORTHO05D004630 9.1e-11 70.9 39 76.9
CARHR232200 Cardamine hirsuta HOM05D000290 ORTHO05D004630 2.0e-10 69.7 39 76.9
AL7G28370 Arabidopsis lyrata HOM05D000290 ORTHO05D004630 5.9e-10 68.2 39 74.4
BcaB03g12448 Brassica carinata HOM05D000290 ORTHO05D004630 5.9e-10 68.2 39 74.4
BcaC07g38154 Brassica carinata HOM05D000290 ORTHO05D004630 1.7e-09 66.6 39 71.8
BraA08t34086Z Brassica rapa HOM05D000290 ORTHO05D004630 1.7e-09 66.6 39 71.8
Thhalv10027088m.g Eutrema salsugineum HOM05D000290 ORTHO05D004630 1.7e-09 66.6 39 71.8
Sp7g22800 Schrenkiella parvula HOM05D000290 ORTHO05D004630 1.7e-09 66.6 39 71.8
Gohir.D07G057700 Gossypium hirsutum HOM05D000290 ORTHO05D004630 3.8e-09 65.5 37 75.7
Gorai.001G061200 Gossypium raimondii HOM05D000290 ORTHO05D004630 3.8e-09 65.5 37 75.7
Potri.012G093600 Populus trichocarpa HOM05D000290 ORTHO05D004630 6.5e-09 64.7 35 77.1
Sabra15G0113100 Salix brachista HOM05D000290 ORTHO05D004630 6.5e-09 64.7 35 77.1
Solyc03g110940.3 Solanum lycopersicum HOM05D000290 ORTHO05D004630 6.5e-09 64.7 36 75.0
Duzib084G0271 Durio zibethinus HOM05D000290 ORTHO05D004630 8.5e-09 64.3 36 77.8
Gohir.A07G053300 Gossypium hirsutum HOM05D000290 ORTHO05D004630 8.5e-09 64.3 37 73.0
Gohir.D09G246000 Gossypium hirsutum HOM05D000290 ORTHO05D004630 8.5e-09 64.3 36 77.8
Gorai.006G270500 Gossypium raimondii HOM05D000290 ORTHO05D004630 8.5e-09 64.3 36 77.8
THA.LOC104825002 Tarenaya hassleriana HOM05D000290 ORTHO05D004630 8.5e-09 64.3 39 71.8
QL10p005012 Quercus lobata HOM05D000290 ORTHO05D004630 1.1e-08 63.9 35 77.1
MELO3C002336.2 Cucumis melo HOM05D000290 ORTHO05D004630 1.5e-08 63.5 54 51.9
Peaxi162Scf00324g00333 Petunia axillaris HOM05D000290 ORTHO05D004630 1.5e-08 63.5 36 72.2
Potri.015G091000 Populus trichocarpa HOM05D000290 ORTHO05D004630 1.5e-08 63.5 35 74.3
CsaV3_1G009330 Cucumis sativus L. HOM05D000290 ORTHO05D004630 1.9e-08 63.2 36 69.4
Gohir.A09G245100 Gossypium hirsutum HOM05D000290 ORTHO05D004630 1.9e-08 63.2 36 75.0
THA.LOC104811604 Tarenaya hassleriana HOM05D000290 ORTHO05D004630 1.9e-08 63.2 39 69.2
CAN.G352.56 Capsicum annuum HOM05D000290 ORTHO05D004630 3.2e-08 62.4 36 72.2
Sopen03g030130 Solanum pennellii HOM05D000290 ORTHO05D004630 3.2e-08 62.4 36 72.2
COL.COLO4_03516 Corchorus olitorius HOM05D000290 ORTHO05D004630 4.2e-08 62.0 36 72.2
Thecc.03G123200 Theobroma cacao HOM05D000290 ORTHO05D004630 4.2e-08 62.0 36 75.0
Migut.I00478 Erythranthe guttata HOM05D000290 ORTHO05D004630 5.5e-08 61.6 42 64.3
Hma1.2p1_0046F.1_g027510 Hydrangea macrophylla HOM05D000290 ORTHO05D004630 5.5e-08 61.6 38 68.4
Nitab4.5_0000366g0080 Nicotiana tabacum HOM05D000290 ORTHO05D004630 5.5e-08 61.6 36 66.7
Lj9C475G6 Lonicera japonica HOM05D000290 ORTHO05D004630 7.2e-08 61.2 39 66.7
CiPaw.11G011800 Carya illinoinensis HOM05D000290 ORTHO05D004630 1.2e-07 60.5 34 73.5
Ciclev10020267m.g Citrus clementina HOM05D000290 ORTHO05D004630 1.2e-07 60.5 38 65.8
Glyma.17G127200 Glycine max HOM05D000290 ORTHO05D004630 1.2e-07 60.5 36 69.4
Lsat_1_v5_gn_4_78801 Lactuca sativa HOM05D000290 ORTHO05D004630 1.2e-07 60.5 35 68.6
SalBow5G1105 Salvia bowleyana HOM05D000290 ORTHO05D004630 1.6e-07 60.1 54 53.7
SGA_v2.0_scaffold161G37824 Striga asiatica HOM05D000290 ORTHO05D004630 1.6e-07 60.1 35 71.4
Cpa.g.sc4.75 Carica papaya HOM05D000290 ORTHO05D004630 2.1e-07 59.7 48 56.2
HanXRQChr02g0035151 Helianthus annuus HOM05D000290 ORTHO05D004630 2.1e-07 59.7 35 68.6
Lsat_1_v5_gn_1_29520 Lactuca sativa HOM05D000290 ORTHO05D004630 2.1e-07 59.7 35 71.4
Nitab4.5_0006219g0020 Nicotiana tabacum HOM05D000290 ORTHO05D004630 2.1e-07 59.7 36 66.7
Eucgr.K02755 Eucalyptus grandis HOM05D000290 ORTHO05D004630 2.7e-07 59.3 54 50.0
GSVIVG01007537001 Vitis vinifera HOM05D000290 ORTHO05D004630 2.7e-07 59.3 39 66.7
CSS0024917 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D004630 4.7e-07 58.5 56 53.6
Manes.14G055200 Manihot esculenta HOM05D000290 ORTHO05D004630 4.7e-07 58.5 39 66.7
Oeu011574.1 Olea europaea HOM05D000290 ORTHO05D004630 4.7e-07 58.5 39 64.1
Nitab4.5_0010637g0030 Nicotiana tabacum HOM05D000290 ORTHO05D004630 8.0e-07 57.8 39 64.1
unitig_0.g2230 Utricularia gibba HOM05D000290 ORTHO05D004630 8.0e-07 57.8 39 61.5
MD17G1259300 Malus domestica HOM05D000290 ORTHO05D004630 1.0e-06 57.4 35 62.9
Nitab4.5_0005418g0070 Nicotiana tabacum HOM05D000290 ORTHO05D004630 1.0e-06 57.4 36 69.4
CSS0022906 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D004630 1.4e-06 57.0 39 61.5
CANSAT80G1334 Cannabis sativa HOM05D000290 ORTHO05D004630 1.4e-06 57.0 35 62.9
CDE02G0588 Ceratophyllum demersum HOM05D000290 ORTHO05D004630 1.8e-06 56.6 41 58.5
PSO017G4570 Papaver somniferum HOM05D000290 ORTHO05D004630 1.8e-06 56.6 34 64.7
PSO478G4646 Papaver somniferum HOM05D000290 ORTHO05D004630 1.8e-06 56.6 34 64.7
RcHm_v2.0_Chr7g0190911 Rosa chinensis HOM05D000290 ORTHO05D004630 1.8e-06 56.6 35 60.0
CDE09G0950 Ceratophyllum demersum HOM05D000290 ORTHO05D004630 2.3e-06 56.2 41 58.5
ECA247G0104 Erigeron canadensis HOM05D000290 ORTHO05D004630 2.3e-06 56.2 35 65.7
Solyc07g009150.3 Solanum lycopersicum HOM05D000290 ORTHO05D004630 2.3e-06 56.2 32 71.9
Sopen07g017140 Solanum pennellii HOM05D000290 ORTHO05D004630 2.3e-06 56.2 32 71.9
PGSC0003DMG400024209 Solanum tuberosum HOM05D000290 ORTHO05D004630 2.3e-06 56.2 32 71.9
Actinidia25610 Actinidia chinensis HOM05D000290 ORTHO05D004630 3.0e-06 55.8 34 73.5
Aa31LG7G11030 Aethionema arabicum HOM05D000290 ORTHO05D004630 3.0e-06 55.8 38 63.2
Haze_07275 Corylus avellana HOM05D003221 ORTHO05D004630 4.0e-06 55.5 54 48.1
FvH4_5g07580 Fragaria vesca HOM05D000290 ORTHO05D004630 4.0e-06 55.5 35 60.0
FAN18G2983 Fragaria x ananassa HOM05D000290 ORTHO05D004630 4.0e-06 55.5 35 60.0
Lj2C144T5 Lonicera japonica HOM05D000290 ORTHO05D004630 4.0e-06 55.5 39 61.5
Lj5C100G2 Lonicera japonica HOM05D000290 ORTHO05D004630 4.0e-06 55.5 39 61.5
Prupe.5G156400 Prunus persica HOM05D000290 ORTHO05D004630 4.0e-06 55.5 35 60.0
MSTRG.4588 Avicennia marina HOM05D000290 ORTHO05D004630 5.2e-06 55.1 33 66.7
FAN04G1418 Fragaria x ananassa HOM05D000290 ORTHO05D004630 5.2e-06 55.1 35 60.0
FAN08G2628 Fragaria x ananassa HOM05D000290 ORTHO05D004630 5.2e-06 55.1 35 60.0
Nn4g22452 Nelumbo nucifera HOM05D000290 ORTHO05D004630 5.2e-06 55.1 39 53.8
TAR446G0003 Trochodendron aralioides HOM05D000290 ORTHO05D004630 5.2e-06 55.1 39 56.4


User provided reference genes

Program Settings