Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 4.5e-49 197.6 99 100.0
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 5.5e-39 164.1 104 80.8
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 7.2e-39 163.7 104 81.7
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 9.5e-39 163.3 104 79.8
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 2.1e-38 162.2 104 79.8
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 2.8e-38 161.8 104 80.8
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 3.6e-38 161.4 104 80.8
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 3.6e-38 161.4 104 80.8
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 3.6e-38 161.4 104 80.8
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 3.6e-38 161.4 104 80.8
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 1.8e-37 159.1 104 79.8
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 3.0e-37 158.3 104 76.9
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 4.4e-36 154.5 104 77.9
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 4.4e-36 154.5 104 77.9
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 4.4e-36 154.5 104 74.0
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 5.7e-36 154.1 104 77.9
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 5.7e-36 154.1 104 77.9
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 2.8e-35 151.8 104 76.9
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 2.8e-35 151.8 104 76.9
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 3.7e-35 151.4 104 74.0
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 4.9e-35 151.0 104 73.1
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 6.3e-35 150.6 104 73.1
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 6.3e-35 150.6 104 74.0
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 6.3e-35 150.6 104 72.1
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 1.4e-34 149.4 104 73.1
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 1.8e-34 149.1 104 72.1
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 1.8e-34 149.1 104 71.2
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 2.4e-34 148.7 104 73.1
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 3.1e-34 148.3 104 73.1
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 4.1e-34 147.9 104 69.2
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 5.4e-34 147.5 104 70.2
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 7.0e-34 147.1 104 72.1
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 9.2e-34 146.7 104 71.2
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 9.2e-34 146.7 104 72.1
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 1.2e-33 146.4 104 70.2
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.2e-33 146.4 104 68.3
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.6e-33 146.0 104 70.2
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 2.7e-33 145.2 104 69.2
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 3.5e-33 144.8 104 69.2
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 5.9e-33 144.1 104 70.2
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 5.9e-33 144.1 104 70.2
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 7.8e-33 143.7 104 70.2
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 7.8e-33 143.7 104 70.2
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 1.0e-32 143.3 104 69.2
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.3e-32 142.9 104 68.3
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 1.7e-32 142.5 104 71.2
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 1.7e-32 142.5 104 68.3
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 2.3e-32 142.1 104 70.2
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 2.3e-32 142.1 104 68.3
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 2.3e-32 142.1 104 65.4
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 3.8e-32 141.4 104 69.2
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 3.8e-32 141.4 104 69.2
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 3.8e-32 141.4 104 67.3
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 5.0e-32 141.0 104 65.4
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 5.0e-32 141.0 104 70.2
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 5.0e-32 141.0 104 68.3
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 6.6e-32 140.6 104 69.2
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 6.6e-32 140.6 104 67.3
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 6.6e-32 140.6 104 68.3
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 8.6e-32 140.2 104 70.2
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 8.6e-32 140.2 104 65.4
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 1.5e-31 139.4 104 65.4
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 1.9e-31 139.0 104 70.2
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.5e-31 138.7 104 66.3
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 2.5e-31 138.7 104 66.3
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.5e-31 138.7 106 65.1
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 3.3e-31 138.3 104 67.3
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 5.6e-31 137.5 104 65.4
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 1.2e-30 136.3 104 65.4
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 1.2e-30 136.3 104 67.3
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.2e-30 136.3 108 63.9
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 1.2e-30 136.3 104 69.2
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 1.2e-30 136.3 104 67.3
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 1.2e-30 136.3 104 67.3
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 2.1e-30 135.6 104 66.3
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 2.8e-30 135.2 104 64.4
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 2.8e-30 135.2 104 67.3
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 2.8e-30 135.2 104 67.3
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 2.8e-30 135.2 104 66.3
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 3.6e-30 134.8 104 67.3
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 3.6e-30 134.8 104 68.3
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 4.7e-30 134.4 104 66.3
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 4.7e-30 134.4 104 68.3
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 6.1e-30 134.0 104 62.5
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 6.1e-30 134.0 104 64.4
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 8.0e-30 133.7 70 98.6
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 1.0e-29 133.3 104 66.3
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 1.0e-29 133.3 104 68.3
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 1.0e-29 133.3 104 65.4
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 1.4e-29 132.9 104 65.4
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 2.3e-29 132.1 104 64.4
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 3.0e-29 131.7 104 67.3
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 4.0e-29 131.3 104 63.5
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 5.2e-29 131.0 104 66.3
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 5.2e-29 131.0 104 64.4
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 8.9e-29 130.2 104 64.4
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.2e-28 129.8 104 62.5
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 1.2e-28 129.8 104 61.5
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 2.0e-28 129.0 95 72.6
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 5.7e-28 127.5 104 62.5
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 7.5e-28 127.1 104 62.5
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 7.5e-28 127.1 104 60.6
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 7.5e-28 127.1 104 60.6
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 7.5e-28 127.1 106 61.3
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 1.7e-27 125.9 104 61.5
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 2.9e-27 125.2 104 61.5
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 2.9e-27 125.2 104 59.6
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 3.7e-27 124.8 107 59.8
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 4.9e-27 124.4 100 64.0
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 4.9e-27 124.4 106 59.4
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 6.4e-27 124.0 104 60.6
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 8.3e-27 123.6 106 59.4
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 8.3e-27 123.6 106 59.4
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 1.1e-26 123.2 103 61.2
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 1.1e-26 123.2 102 62.7
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 1.8e-26 122.5 98 64.3
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 2.4e-26 122.1 104 60.6
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 3.2e-26 121.7 104 59.6
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 4.1e-26 121.3 97 64.9
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 7.0e-26 120.6 97 60.8
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 7.0e-26 120.6 106 60.4
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 2.0e-25 119.0 104 59.6
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 2.7e-25 118.6 104 60.6
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 3.5e-25 118.2 104 60.6
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 3.5e-25 118.2 104 56.7
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 5.9e-25 117.5 105 60.0
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 7.8e-25 117.1 106 57.5
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 1.0e-24 116.7 104 58.7
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 1.0e-24 116.7 104 58.7
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 1.3e-24 116.3 104 57.7
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 1.3e-24 116.3 104 57.7
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.3e-24 116.3 100 61.0
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.1e-23 113.2 104 53.8
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 1.5e-23 112.8 104 55.8
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 2.5e-23 112.1 104 55.8
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 2.5e-23 112.1 97 55.7
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 4.3e-23 111.3 59 96.6
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 9.5e-23 110.2 97 60.8
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 9.5e-23 110.2 95 61.1
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.6e-22 109.4 95 62.1
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 8.0e-22 107.1 106 50.9
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 8.0e-22 107.1 104 56.7
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 8.0e-22 107.1 99 57.6
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 8.0e-22 107.1 95 61.1
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 1.1e-21 106.7 93 58.1
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 1.4e-21 106.3 99 59.6
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 2.3e-21 105.5 104 50.0
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 3.1e-21 105.1 94 56.4
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 5.2e-21 104.4 104 49.0
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 6.8e-21 104.0 104 50.0
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 1.2e-20 103.2 95 57.9
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 2.0e-20 102.4 83 67.5
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 4.4e-20 101.3 104 50.0
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 9.8e-20 100.1 94 59.6
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 1.9e-18 95.9 99 51.5
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 3.2e-18 95.1 77 66.2
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 9.2e-18 93.6 67 79.1
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 2.3e-16 89.0 69 68.1
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 1.5e-15 86.3 75 58.7
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 1.6e-14 82.8 105 47.6
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 6.8e-13 77.4 101 43.6
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.9e-11 72.0 44 75.0
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 3.2e-10 68.6 43 69.8
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 2.1e-09 65.9 40 72.5
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 3.5e-09 65.1 85 41.2
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.3e-08 63.2 37 73.0
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 6.6e-08 60.8 79 40.5


User provided reference genes

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