Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 2.5e-65 251.9 122 100.0
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 1.6e-59 232.6 113 100.0
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 1.0e-58 229.9 113 99.1
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 6.6e-58 227.3 113 97.3
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 6.6e-58 227.3 113 97.3
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 6.4e-53 210.7 130 81.5
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 3.3e-33 145.2 128 60.9
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 3.3e-33 145.2 128 60.9
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 3.3e-33 145.2 128 60.9
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 1.2e-32 143.3 128 60.9
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 8.1e-32 140.6 129 60.5
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 6.8e-31 137.5 127 59.1
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 6.8e-31 137.5 126 61.1
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 4.4e-30 134.8 130 56.9
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 4.4e-30 134.8 130 56.9
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 2.2e-29 132.5 128 55.5
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 2.2e-29 132.5 128 56.2
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 2.9e-29 132.1 127 57.5
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 3.2e-28 128.6 127 54.3
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 3.2e-28 128.6 127 54.3
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 5.4e-28 127.9 128 53.9
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 5.4e-28 127.9 128 53.9
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 7.8e-27 124.0 128 51.6
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 7.8e-27 124.0 128 51.6
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 3.0e-26 122.1 120 57.5
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 8.7e-26 120.6 84 64.3
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 4.3e-25 118.2 84 64.3
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 4.3e-25 118.2 84 64.3
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 5.6e-25 117.9 84 63.1
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 5.6e-25 117.9 84 65.5
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 5.6e-25 117.9 114 52.6
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 7.3e-25 117.5 121 50.4
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 9.6e-25 117.1 94 56.4
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.6e-24 116.3 96 60.4
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 1.6e-24 116.3 84 65.5
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 1.6e-24 116.3 84 65.5
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 2.8e-24 115.5 84 63.1
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 3.6e-24 115.2 114 53.5
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 3.6e-24 115.2 84 65.5
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 6.2e-24 114.4 84 65.5
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 8.1e-24 114.0 84 60.7
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 8.1e-24 114.0 85 65.9
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 8.1e-24 114.0 110 53.6
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 1.1e-23 113.6 84 63.1
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.1e-23 113.6 96 57.3
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 1.1e-23 113.6 96 59.4
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 1.1e-23 113.6 96 58.3
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 1.8e-23 112.8 84 61.9
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.8e-23 112.8 84 64.3
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 2.4e-23 112.5 84 60.7
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 2.4e-23 112.5 84 61.9
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 2.4e-23 112.5 96 58.3
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 2.4e-23 112.5 96 56.2
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 2.4e-23 112.5 105 59.0
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 2.4e-23 112.5 86 60.5
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 4.0e-23 111.7 84 60.7
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 4.0e-23 111.7 96 55.2
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 4.0e-23 111.7 84 61.9
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 5.3e-23 111.3 84 64.3
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 6.9e-23 110.9 105 58.1
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.9e-23 110.9 121 49.6
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.9e-23 110.9 121 49.6
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 6.9e-23 110.9 128 46.1
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 6.9e-23 110.9 84 58.3
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 6.9e-23 110.9 84 58.3
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 9.0e-23 110.5 84 61.9
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 9.0e-23 110.5 84 61.9
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.2e-22 110.2 105 58.1
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 1.2e-22 110.2 86 58.1
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 1.2e-22 110.2 131 46.6
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 1.2e-22 110.2 84 58.3
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 1.5e-22 109.8 84 61.9
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 1.5e-22 109.8 84 59.5
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 2.0e-22 109.4 84 59.5
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.0e-22 109.4 84 58.3
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 2.0e-22 109.4 84 60.7
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 2.6e-22 109.0 126 45.2
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 3.4e-22 108.6 96 56.2
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 4.4e-22 108.2 84 61.9
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 4.4e-22 108.2 84 59.5
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 4.4e-22 108.2 137 43.8
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 4.4e-22 108.2 84 57.1
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 5.8e-22 107.8 84 58.3
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 5.8e-22 107.8 118 50.8
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 5.8e-22 107.8 84 63.1
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 5.8e-22 107.8 84 58.3
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.6e-22 107.5 121 49.6
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 7.6e-22 107.5 84 59.5
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 1.3e-21 106.7 84 60.7
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 1.3e-21 106.7 84 60.7
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.7e-21 106.3 84 57.1
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 2.2e-21 105.9 84 59.5
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.2e-21 105.9 121 47.9
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 2.2e-21 105.9 86 55.8
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.2e-21 105.9 96 54.2
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 3.8e-21 105.1 84 58.3
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.8e-21 105.1 121 45.5
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.8e-21 105.1 121 45.5
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.8e-21 105.1 121 45.5
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 4.9e-21 104.8 118 45.8
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 6.4e-21 104.4 84 59.5
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 6.4e-21 104.4 84 59.5
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 6.4e-21 104.4 84 58.3
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 8.4e-21 104.0 96 52.1
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 8.4e-21 104.0 121 45.5
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 1.1e-20 103.6 86 59.3
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.4e-20 103.2 84 57.1
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.4e-20 103.2 84 58.3
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 2.4e-20 102.4 84 56.0
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 2.4e-20 102.4 84 57.1
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 3.2e-20 102.1 84 58.3
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 3.2e-20 102.1 84 58.3
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 4.2e-20 101.7 84 58.3
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 7.1e-20 100.9 84 58.3
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 7.1e-20 100.9 84 57.1
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 2.1e-19 99.4 84 56.0
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 4.6e-19 98.2 84 56.0
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 4.6e-19 98.2 84 56.0
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 6.0e-19 97.8 84 53.6
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 6.0e-19 97.8 85 55.3
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.0e-18 97.1 96 54.2
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 3.9e-18 95.1 84 54.8
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 8.7e-18 94.0 85 52.9
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 1.1e-17 93.6 84 54.8
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.3e-17 92.0 84 57.1
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 4.3e-17 91.7 96 51.0
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 4.3e-17 91.7 96 51.0
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 1.3e-16 90.1 84 56.0
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 2.1e-16 89.4 75 57.3
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 2.1e-16 89.4 84 52.4
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 2.1e-16 89.4 84 52.4
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 2.8e-16 89.0 135 43.7
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.8e-16 89.0 76 55.3
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 4.8e-16 88.2 129 41.9
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 8.1e-16 87.4 131 40.5
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.1e-15 87.0 135 43.0
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 1.1e-15 87.0 84 50.0
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 2.4e-15 85.9 120 43.3
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 5.3e-15 84.7 84 48.8
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 5.3e-15 84.7 84 52.4
Carub.0004s2401 Capsella rubella HOM05D004407 ORTHO05D005074 6.9e-15 84.3 104 54.8
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 9.0e-15 84.0 113 44.2
Carub.0006s3296 Capsella rubella HOM05D004407 ORTHO05D005074 1.2e-14 83.6 123 48.0
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 2.0e-14 82.8 84 50.0
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 2.6e-14 82.4 84 48.8
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 3.4e-14 82.0 84 48.8
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 9.9e-14 80.5 90 45.6
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 1.7e-13 79.7 84 48.8
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.2e-13 79.3 84 50.0
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 2.2e-13 79.3 84 46.4
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 8.4e-13 77.4 98 42.9
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 8.4e-13 77.4 84 51.2
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.4e-12 75.9 84 48.8
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 2.4e-12 75.9 84 48.8
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 2.4e-12 75.9 72 54.2
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 5.4e-12 74.7 119 39.5
Carub.0006s3434 Capsella rubella HOM05D004407 ORTHO05D005074 7.1e-12 74.3 127 44.9
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 7.1e-12 74.3 60 53.3
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 2.7e-11 72.4 95 45.3
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.8e-10 69.7 86 41.9
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 3.0e-10 68.9 46 67.4
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 1.1e-09 67.0 53 60.4
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.8e-07 59.7 55 49.1
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 4.0e-07 58.5 88 38.6
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 2.0e-06 56.2 75 44.0
C07p36420 Brassica napus HOM05D013829 ORTHO05D015952 3.4e-06 55.5 50 56.0
BcaC06g33826 Brassica carinata HOM05D013829 ORTHO05D015952 7.6e-06 54.3 51 56.9
BcaNung05649 Brassica carinata HOM05D013829 ORTHO05D015952 7.6e-06 54.3 51 56.9


User provided reference genes

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