Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22283 Brassica carinata HOM05D005872 ORTHO05D017612 3.3e-50 201.4 104 100.0
BcaC01g03729 Brassica carinata HOM05D005872 ORTHO05D017612 3.8e-46 188.0 98 95.9
C03p78990 Brassica napus HOM05D005872 ORTHO05D017612 9.9e-39 163.3 108 84.3
A07p00900 Brassica napus HOM05D005872 ORTHO05D017612 2.5e-34 148.7 112 75.0
C01p40880 Brassica napus HOM05D005872 ORTHO05D017612 1.9e-29 132.5 71 94.4
BolC1t04043H Brassica oleracea HOM05D005872 ORTHO05D017612 1.9e-29 132.5 71 94.4
BcaC01g03102 Brassica carinata HOM05D052258 ORTHO05D039292 9.6e-26 120.2 95 70.5
BolC3t17889H Brassica oleracea HOM05D052258 ORTHO05D039292 9.6e-26 120.2 95 70.5
A10p05890 Brassica napus HOM05D005872 ORTHO05D008133 1.7e-22 109.4 77 75.3
BraA10t42851Z Brassica rapa HOM05D005872 ORTHO05D008133 1.7e-22 109.4 77 75.3
Thhalv10008395m.g Eutrema salsugineum HOM05D005872 ORTHO05D008133 5.0e-22 107.8 76 72.4
Sp1g06070 Schrenkiella parvula HOM05D005872 ORTHO05D008133 6.5e-22 107.5 76 71.1
C05p05390 Brassica napus HOM05D005872 ORTHO05D008133 1.1e-21 106.7 77 74.0
BolC5t29311H Brassica oleracea HOM05D005872 ORTHO05D008133 1.1e-21 106.7 77 74.0
Carub.0001s0662 Capsella rubella HOM05D005872 ORTHO05D008133 2.5e-21 105.5 77 71.4
THA.LOC104808420 Tarenaya hassleriana HOM05D005872 ORTHO05D008133 3.2e-21 105.1 76 71.1
AT1G07320 Arabidopsis thaliana HOM05D005872 ORTHO05D008133 5.5e-21 104.4 77 70.1
Aa31LG1G6580 Aethionema arabicum HOM05D005872 ORTHO05D008133 7.2e-21 104.0 76 67.1
Ciclev10028981m.g Citrus clementina HOM05D005872 ORTHO05D008133 7.2e-21 104.0 76 67.1
CARHR007030 Cardamine hirsuta HOM05D005872 ORTHO05D008133 9.3e-21 103.6 77 70.1
AL1G17470 Arabidopsis lyrata HOM05D005872 ORTHO05D008133 1.2e-20 103.2 77 68.8
THA.LOC104826298 Tarenaya hassleriana HOM05D005872 ORTHO05D008133 2.1e-20 102.4 76 69.7
Atru.chr3.4076 Acer truncatum HOM05D005872 ORTHO05D008133 7.9e-20 100.5 76 64.5
Duzib168G1043 Durio zibethinus HOM05D005872 ORTHO05D008133 5.7e-18 94.4 76 63.2
Sc06g0008430 Simmondsia chinensis HOM05D005872 ORTHO05D008133 5.7e-18 94.4 76 61.8
Lsat_1_v5_gn_5_172301 Lactuca sativa HOM05D005872 ORTHO05D008133 1.6e-17 92.8 76 60.5
Lj1A141T52 Lonicera japonica HOM05D005872 ORTHO05D008133 1.6e-17 92.8 76 60.5
Rhsim01G0235400 Rhododendron simsii HOM05D005872 ORTHO05D008133 2.2e-17 92.4 76 61.8
Dinv14463 Davidia involucrata HOM05D005872 ORTHO05D008133 2.8e-17 92.0 76 59.2
Sabra06G0170900 Salix brachista HOM05D005872 ORTHO05D008133 3.7e-17 91.7 77 61.0
HanXRQChr01g0011361 Helianthus annuus HOM05D005872 ORTHO05D008133 4.8e-17 91.3 78 60.3
Nitab4.5_0000918g0030 Nicotiana tabacum HOM05D005872 ORTHO05D008133 6.3e-17 90.9 76 60.5
CANSAT54G1024 Cannabis sativa HOM05D005872 ORTHO05D008133 8.2e-17 90.5 76 59.2
Cfa011659 Carpinus fangiana HOM05D005872 ORTHO05D008133 8.2e-17 90.5 76 60.5
Haze_24262 Corylus avellana HOM05D005872 ORTHO05D008133 8.2e-17 90.5 76 60.5
Gohir.A08G002100 Gossypium hirsutum HOM05D005872 ORTHO05D008133 8.2e-17 90.5 76 60.5
Gohir.D08G012800 Gossypium hirsutum HOM05D005872 ORTHO05D008133 8.2e-17 90.5 76 60.5
Gorai.004G006900 Gossypium raimondii HOM05D005872 ORTHO05D008133 8.2e-17 90.5 76 60.5
Potri.006G221100 Populus trichocarpa HOM05D005872 ORTHO05D008133 8.2e-17 90.5 77 59.7
Thecc.09G305200 Theobroma cacao HOM05D005872 ORTHO05D008133 8.2e-17 90.5 76 61.8
COL.COLO4_19111 Corchorus olitorius HOM05D005872 ORTHO05D008133 1.4e-16 89.7 76 59.2
ECA248G3182 Erigeron canadensis HOM05D005872 ORTHO05D008133 1.8e-16 89.4 76 55.3
MELO3C025869.2 Cucumis melo HOM05D005872 ORTHO05D008133 2.4e-16 89.0 76 59.2
CAN.G375.78 Capsicum annuum HOM05D005872 ORTHO05D008133 4.1e-16 88.2 76 57.9
CAN.G375.79 Capsicum annuum HOM05D005872 ORTHO05D008133 4.1e-16 88.2 76 57.9
Hma1.2p1_1010F.1_g247380 Hydrangea macrophylla HOM05D005872 ORTHO05D008133 4.1e-16 88.2 76 59.2
Manes.01G164100 Manihot esculenta HOM05D005872 ORTHO05D008133 4.1e-16 88.2 76 60.5
HPP92_014295 Vanilla planifolia HOM05D005872 ORTHO05D008133 4.1e-16 88.2 77 58.4
ClCG02G019690 Citrullus lanatus HOM05D005872 ORTHO05D008133 5.3e-16 87.8 76 57.9
CsaV3_6G016380 Cucumis sativus L. HOM05D005872 ORTHO05D008133 5.3e-16 87.8 76 57.9
Glyma.03G110100 Glycine max HOM05D005872 ORTHO05D008133 6.9e-16 87.4 77 62.3
Nitab4.5_0000325g0040 Nicotiana tabacum HOM05D005872 ORTHO05D008133 6.9e-16 87.4 76 57.9
Hund18857 Selenicereus undatus HOM05D005872 ORTHO05D008133 6.9e-16 87.4 76 55.3
Solyc07g061900.3 Solanum lycopersicum HOM05D005872 ORTHO05D008133 6.9e-16 87.4 76 57.9
Sopen07g030180 Solanum pennellii HOM05D005872 ORTHO05D008133 6.9e-16 87.4 76 57.9
PGSC0003DMG400007051 Solanum tuberosum HOM05D005872 ORTHO05D008133 6.9e-16 87.4 76 57.9
TAR369G0221 Trochodendron aralioides HOM05D005872 ORTHO05D008133 6.9e-16 87.4 76 56.6
TAR369G0416 Trochodendron aralioides HOM05D005872 ORTHO05D008133 6.9e-16 87.4 76 56.6
Glyma.07G114900 Glycine max HOM05D005872 ORTHO05D008133 1.2e-15 86.7 77 62.3
MD03G1073800 Malus domestica HOM05D005872 ORTHO05D008133 1.2e-15 86.7 76 60.5
Prupe.6G060600 Prunus persica HOM05D005872 ORTHO05D008133 1.2e-15 86.7 76 60.5
Actinidia34449 Actinidia chinensis HOM05D005872 ORTHO05D008133 1.5e-15 86.3 76 56.6
Sed0022906 Sechium edule HOM05D005872 ORTHO05D008133 1.5e-15 86.3 76 56.6
VMungo0331G0535 Vigna mungo HOM05D005872 ORTHO05D008133 1.5e-15 86.3 77 61.0
TWI75G1308 Tripterygium wilfordii HOM05D005872 ORTHO05D008133 2.0e-15 85.9 76 59.2
Nn2g13627 Nelumbo nucifera HOM05D005872 ORTHO05D008133 3.4e-15 85.1 76 56.6
Aqoxy4G02659 Aquilegia oxysepala HOM05D005872 ORTHO05D008133 4.5e-15 84.7 76 55.3
Cc01_g13960 Coffea canephora HOM05D005872 ORTHO05D008133 5.9e-15 84.3 76 56.6
Phvul.010G048100 Phaseolus vulgaris HOM05D005872 ORTHO05D008133 5.9e-15 84.3 77 61.0
Ah.08g220770 Amaranthus hybridus HOM05D005872 ORTHO05D008133 7.7e-15 84.0 76 56.6
ClCG06G015810 Citrullus lanatus HOM05D005872 ORTHO05D008133 7.7e-15 84.0 76 56.6
CDE06G2541 Ceratophyllum demersum HOM05D005872 ORTHO05D008133 1.3e-14 83.2 76 53.9
CDE07G0691 Ceratophyllum demersum HOM05D005872 ORTHO05D008133 1.3e-14 83.2 76 53.9
PSO339G6296 Papaver somniferum HOM05D005872 ORTHO05D008133 1.7e-14 82.8 76 56.6
PSO384G4655 Papaver somniferum HOM05D005872 ORTHO05D008133 1.7e-14 82.8 76 56.6
MD11G1080100 Malus domestica HOM05D005872 ORTHO05D008133 2.2e-14 82.4 79 59.5
arahy.Tifrunner.gnm1.ann1.MB6FU1 Arachis hypogaea HOM05D005872 ORTHO05D008133 5.0e-14 81.3 77 57.1
arahy.Tifrunner.gnm1.ann1.PIAF8F Arachis hypogaea HOM05D005872 ORTHO05D008133 5.0e-14 81.3 77 57.1
AUR62001682 Chenopodium quinoa HOM05D005872 ORTHO05D008133 5.0e-14 81.3 76 56.6
Lj3g0000632 Lotus japonicus HOM05D005872 ORTHO05D008133 5.0e-14 81.3 77 58.4
CiPaw.14G061000 Carya illinoinensis HOM05D005872 ORTHO05D008133 6.5e-14 80.9 76 52.6
vmacro14583 Vaccinium macrocarpon HOM05D005872 ORTHO05D008133 6.5e-14 80.9 78 55.1
AUR62020100 Chenopodium quinoa HOM05D005872 ORTHO05D008133 8.5e-14 80.5 76 56.6
FAN21G3245 Fragaria x ananassa HOM05D005872 ORTHO05D008133 1.1e-13 80.1 79 57.0
QL01p026804 Quercus lobata HOM05D005872 ORTHO05D008133 1.1e-13 80.1 79 58.2
Psat4g224360 Pisum sativum HOM05D005872 ORTHO05D008133 1.4e-13 79.7 77 58.4
MBI05_g03471_MAGBIO Magnolia biondii HOM05D005872 ORTHO05D008133 1.9e-13 79.3 77 54.5
Nn2g11395 Nelumbo nucifera HOM05D005872 ORTHO05D008133 1.9e-13 79.3 76 52.6
DCAR_018967 Daucus carota HOM05D000012 ORTHO05D174931 2.5e-13 79.0 76 53.9
SGA_v2.0_scaffold161G37856 Striga asiatica HOM05D005872 ORTHO05D008133 2.5e-13 79.0 76 53.9
EL10Ac7g16129 Beta vulgaris HOM05D005872 ORTHO05D008133 3.2e-13 78.6 77 55.8
Eucgr.J01939 Eucalyptus grandis HOM05D005872 ORTHO05D008133 3.2e-13 78.6 76 52.6
FvH4_3g38221 Fragaria vesca HOM05D005872 ORTHO05D008133 3.2e-13 78.6 79 55.7
FAN11G1028 Fragaria x ananassa HOM05D005872 ORTHO05D008133 3.2e-13 78.6 79 55.7
FAN16G1585 Fragaria x ananassa HOM05D005872 ORTHO05D008133 3.2e-13 78.6 79 55.7
RcHm_v2.0_Chr5g0068721 Rosa chinensis HOM05D005872 ORTHO05D008133 3.2e-13 78.6 79 55.7
MSTRG.17870 Avicennia marina HOM05D005872 ORTHO05D008133 4.2e-13 78.2 76 53.9
Oeu045518.2 Olea europaea HOM05D005872 ORTHO05D008133 4.2e-13 78.2 76 55.3
Ca_25798_v3 Cicer arietinum L. HOM05D005872 ORTHO05D008133 1.2e-12 76.6 77 54.5
unitig_0.g444 Utricularia gibba HOM05D005872 ORTHO05D008133 1.2e-12 76.6 76 56.6
Os03g0265400 Oryza sativa ssp. japonica HOM05D005872 ORTHO05D008133 2.7e-12 75.5 77 51.9
PGR119G2098 Punica granatum HOM05D005872 ORTHO05D008133 2.7e-12 75.5 76 52.6
TPR.G33123 Trifolium pratense HOM05D005872 ORTHO05D008133 3.6e-12 75.1 77 54.5
SalBow2G3036 Salvia bowleyana HOM05D005872 ORTHO05D008133 4.6e-12 74.7 76 52.6
ATR0618G074 Amborella trichopoda HOM05D005872 ORTHO05D008133 1.4e-11 73.2 76 50.0
Migut.N00890 Erythranthe guttata HOM05D005872 ORTHO05D008133 1.8e-11 72.8 76 50.0
Medtr8g006995 Medicago truncatula HOM05D005872 ORTHO05D008133 1.8e-11 72.8 77 53.2
BcaC07g40681 Brassica carinata HOM05D005872 ORTHO05D017612 2.3e-11 72.4 37 91.9
Peaxi162Scf00003g04831 Petunia axillaris HOM05D005872 ORTHO05D008133 3.0e-11 72.0 77 49.4
Zm00001eb011760 Zea mays HOM05D005872 ORTHO05D008133 8.8e-11 70.5 77 51.9
C08p36790 Brassica napus HOM05D005872 ORTHO05D017612 2.5e-10 68.9 35 91.4
BolC8t51258H Brassica oleracea HOM05D005872 ORTHO05D017612 2.5e-10 68.9 35 91.4
CSS0008565 Camellia sinensis var. sinensis HOM05D005872 ORTHO05D008133 5.7e-10 67.8 58 58.6
Lalb_Chr12g0210551 Lupinus albus HOM05D005872 ORTHO05D008133 2.8e-09 65.5 58 53.4
SEGI_15715 Sequoiadendron giganteum HOM05D005872 ORTHO05D008133 4.8e-09 64.7 77 45.5
AagrBONN_evm.TU.Sc2ySwM_344.3555 Anthoceros agrestis HOM05D005872 ORTHO05D008133 9.1e-08 60.5 77 41.6
SMO347G0310 Selaginella moellendorffii HOM05D005872 ORTHO05D008133 9.1e-08 60.5 76 43.4
Pp3c8_21780 Physcomitrium patens HOM05D005872 ORTHO05D008133 7.7e-07 57.4 76 36.8
Cpa.g.sc112.52 Carica papaya HOM05D005872 ORTHO05D008133 1.3e-06 56.6 37 70.3
RcHm_v2.0_Chr5g0068671 Rosa chinensis HOM05D005872 ORTHO05D008133 3.8e-06 55.1 46 54.3
MD08G1127500 Malus domestica HOM05D005872 ORTHO05D008133 6.5e-06 54.3 63 50.8
Pp3c23_4120 Physcomitrium patens HOM05D005872 ORTHO05D008133 8.5e-06 53.9 76 34.2
GSVIVG01024788001 Vitis vinifera HOM05D005872 ORTHO05D008133 8.5e-06 53.9 37 62.2


User provided reference genes

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