Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 1.8e-44 182.2 89 100.0
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 3.9e-44 181.0 89 98.9
C01p25640 Brassica napus HOM05D004613 ORTHO05D006095 3.1e-41 171.4 89 94.4
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 2.0e-40 168.7 89 93.3
BcaC09g50421 Brassica carinata HOM05D004613 ORTHO05D006095 4.5e-40 167.5 89 92.1
C07p27290 Brassica napus HOM05D004613 ORTHO05D040533 1.0e-39 166.4 89 92.1
BolC7t43257H Brassica oleracea HOM05D004613 ORTHO05D040533 1.0e-39 166.4 89 92.1
BcaC07g37284 Brassica carinata HOM05D004613 ORTHO05D006095 8.5e-39 163.3 89 88.8
BolC8t47558H Brassica oleracea HOM05D004613 ORTHO05D006095 8.5e-39 163.3 89 88.8
C05p42320 Brassica napus HOM05D004613 ORTHO05D006095 8.8e-36 153.3 89 85.4
C04p31600 Brassica napus HOM05D004613 ORTHO05D006095 5.7e-35 150.6 91 82.4
C09p29080 Brassica napus HOM05D004613 ORTHO05D006095 4.8e-34 147.5 89 83.1
C03p71850 Brassica napus HOM05D004613 ORTHO05D006095 1.6e-32 142.5 88 80.7
C09p20670 Brassica napus HOM05D004613 ORTHO05D006095 1.1e-30 136.3 93 76.3
C02p33910 Brassica napus HOM05D004613 ORTHO05D006095 2.1e-29 132.1 88 79.5
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 2.0e-24 115.5 95 64.2
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 5.9e-24 114.0 95 63.2
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 5.9e-24 114.0 95 63.2
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 5.9e-24 114.0 95 63.2
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 5.9e-24 114.0 95 63.2
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 1.3e-23 112.8 95 62.1
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 3.8e-23 111.3 56 91.1
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 1.5e-22 109.4 56 91.1
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 1.5e-22 109.4 56 91.1
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 4.2e-22 107.8 57 87.7
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 5.5e-22 107.5 55 90.9
C04p09800 Brassica napus HOM05D004613 ORTHO05D006095 7.2e-22 107.1 61 83.6
BolC5t32960H Brassica oleracea HOM05D004613 ORTHO05D006095 8.0e-21 103.6 56 87.5
C03p78440 Brassica napus HOM05D012085 ORTHO05D006095 2.3e-20 102.1 54 87.0
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 8.8e-20 100.1 94 58.5
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 7.5e-19 97.1 95 56.8
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 9.8e-19 96.7 95 55.8
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 9.8e-19 96.7 95 55.8
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 9.8e-19 96.7 95 56.8
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 7.2e-14 80.5 96 47.9
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 2.8e-13 78.6 68 52.9
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 3.0e-12 75.1 86 39.5
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 1.3e-10 69.7 96 41.7
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 4.9e-10 67.8 56 55.4
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 4.9e-10 67.8 56 55.4
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 4.9e-10 67.8 87 42.5
BcaC02g11089 Brassica carinata HOM05D000249 ORTHO05D032228 7.0e-09 63.9 28 92.9
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 9.2e-09 63.5 56 51.8
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 1.2e-08 63.2 56 53.6
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 1.6e-08 62.8 54 53.7
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 2.7e-08 62.0 54 50.0
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 2.7e-08 62.0 96 37.5
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 2.7e-08 62.0 56 50.0
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 2.7e-08 62.0 56 53.6
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 3.5e-08 61.6 49 55.1
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 3.5e-08 61.6 56 51.8
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 4.5e-08 61.2 71 46.5
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 5.9e-08 60.8 46 60.9
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 5.9e-08 60.8 56 50.0
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 7.8e-08 60.5 56 46.4
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 7.8e-08 60.5 56 53.6
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 7.8e-08 60.5 57 50.9
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 7.8e-08 60.5 57 50.9
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 7.8e-08 60.5 54 51.9
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 1.0e-07 60.1 44 61.4
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 1.0e-07 60.1 56 51.8
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.0e-07 60.1 56 51.8
BcaC03g15600 Brassica carinata HOM05D008340 ORTHO05D014940 1.3e-07 59.7 56 58.9
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.7e-07 59.3 56 51.8
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 2.3e-07 58.9 56 48.2
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.3e-07 58.9 56 48.2
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 2.3e-07 58.9 66 51.5
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 2.9e-07 58.5 56 46.4
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.9e-07 58.2 47 55.3
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.9e-07 58.2 55 50.9
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 6.6e-07 57.4 44 59.1
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 6.6e-07 57.4 95 37.9
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 6.6e-07 57.4 95 37.9
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 6.6e-07 57.4 44 56.8
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 8.6e-07 57.0 56 46.4
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 8.6e-07 57.0 83 39.8
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 8.6e-07 57.0 56 50.0
BcaC04g20970 Brassica carinata HOM05D004613 ORTHO05D014940 1.1e-06 56.6 49 61.2
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 1.1e-06 56.6 46 54.3
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 1.5e-06 56.2 56 51.8
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 1.9e-06 55.8 56 48.2
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 1.9e-06 55.8 55 52.7
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 1.9e-06 55.8 93 37.6
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 1.9e-06 55.8 47 53.2
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 2.5e-06 55.5 44 56.8
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 2.5e-06 55.5 44 54.5
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 2.5e-06 55.5 44 54.5
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 2.5e-06 55.5 44 54.5
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 3.3e-06 55.1 95 33.7
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 3.3e-06 55.1 48 50.0
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 4.3e-06 54.7 56 48.2
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 5.6e-06 54.3 67 43.3
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 5.6e-06 54.3 67 43.3
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 5.6e-06 54.3 57 54.4
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 5.6e-06 54.3 56 50.0
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 7.3e-06 53.9 56 46.4
C08p07130 Brassica napus HOM05D004613 ORTHO05D014940 7.3e-06 53.9 53 56.6
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 7.3e-06 53.9 56 48.2
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 9.5e-06 53.5 56 46.4


User provided reference genes

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