Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22092 Brassica carinata HOM05D004224 ORTHO05D006437 6.5e-48 193.7 98 100.0
C09p23550 Brassica napus HOM05D004224 ORTHO05D006437 4.6e-38 161.0 125 73.6
BolC9t55274H Brassica oleracea HOM05D004224 ORTHO05D006437 4.6e-38 161.0 125 73.6
BolC5t32389H Brassica oleracea HOM05D004224 ORTHO05D006437 3.9e-37 157.9 118 72.9
BcaB04g21275 Brassica carinata HOM05D004224 ORTHO05D006437 2.6e-17 92.0 139 44.6
BolC1t05538H Brassica oleracea HOM05D004224 ORTHO05D006437 2.6e-17 92.0 139 44.6
AL3G19030 Arabidopsis lyrata HOM05D004224 ORTHO05D006437 1.3e-16 89.7 111 49.5
AT3G07670 Arabidopsis thaliana HOM05D004224 ORTHO05D006437 1.3e-16 89.7 111 49.5
Carub.0003s0725 Capsella rubella HOM05D004224 ORTHO05D006437 1.3e-16 89.7 111 49.5
Thhalv10020552m.g Eutrema salsugineum HOM05D004224 ORTHO05D006437 1.7e-16 89.4 137 43.8
CARHR082380 Cardamine hirsuta HOM05D004224 ORTHO05D006437 6.5e-16 87.4 111 48.6
Sp3g06610 Schrenkiella parvula HOM05D004224 ORTHO05D006437 1.9e-15 85.9 137 43.1
Aa31LG5G18250 Aethionema arabicum HOM05D004224 ORTHO05D006437 5.5e-15 84.3 111 45.9
BraA01t04368Z Brassica rapa HOM05D004224 ORTHO05D006437 1.2e-14 83.2 130 44.6
THA.LOC104802631 Tarenaya hassleriana HOM05D004224 ORTHO05D006437 1.2e-14 83.2 139 40.3
PGSC0003DMG400017407 Solanum tuberosum HOM05D004224 ORTHO05D006437 3.6e-14 81.6 137 40.1
Sopen07g023840 Solanum pennellii HOM05D004224 ORTHO05D006437 1.0e-13 80.1 138 40.6
Cpa.g.sc136.38 Carica papaya HOM05D004224 ORTHO05D006437 1.4e-13 79.7 137 39.4
Ciclev10014974m.g Citrus clementina HOM05D004224 ORTHO05D006437 1.4e-13 79.7 137 40.9
Solyc07g045310.4 Solanum lycopersicum HOM05D004224 ORTHO05D006437 1.4e-13 79.7 137 38.7
CiPaw.03G282900 Carya illinoinensis HOM05D004224 ORTHO05D006437 1.8e-13 79.3 111 45.0
arahy.Tifrunner.gnm1.ann1.CZ6VEU Arachis hypogaea HOM05D004224 ORTHO05D006437 5.2e-13 77.8 137 39.4
arahy.Tifrunner.gnm1.ann1.ZYNV17 Arachis hypogaea HOM05D004224 ORTHO05D006437 5.2e-13 77.8 137 39.4
Lalb_Chr04g0259131 Lupinus albus HOM05D004224 ORTHO05D006437 5.2e-13 77.8 137 40.1
Glyma.13G010500 Glycine max HOM05D004224 ORTHO05D006437 6.8e-13 77.4 144 38.2
Manes.13G060800 Manihot esculenta HOM05D004224 ORTHO05D006437 8.8e-13 77.0 144 38.2
CANSAT64G1501 Cannabis sativa HOM05D004224 ORTHO05D006437 1.2e-12 76.6 137 38.7
Cfa014211 Carpinus fangiana HOM05D004224 ORTHO05D006437 1.2e-12 76.6 137 39.4
ClCG02G002970 Citrullus lanatus HOM05D004224 ORTHO05D006437 1.2e-12 76.6 131 41.2
Haze_12602 Corylus avellana HOM05D004224 ORTHO05D006437 1.2e-12 76.6 137 39.4
Haze_12613 Corylus avellana HOM05D004224 ORTHO05D006437 1.2e-12 76.6 137 39.4
ECA236G4771 Erigeron canadensis HOM05D004224 ORTHO05D006437 1.2e-12 76.6 137 40.1
RcHm_v2.0_Chr2g0155741 Rosa chinensis HOM05D004224 ORTHO05D006437 1.2e-12 76.6 137 38.0
EL10Ac9g22662 Beta vulgaris HOM05D004224 ORTHO05D006437 1.5e-12 76.3 111 43.2
CsaV3_7G002430 Cucumis sativus L. HOM05D004224 ORTHO05D006437 1.5e-12 76.3 137 38.7
COL.COLO4_19641 Corchorus olitorius HOM05D004224 ORTHO05D006437 2.0e-12 75.9 133 38.3
MELO3C024188.2 Cucumis melo HOM05D004224 ORTHO05D006437 2.0e-12 75.9 137 38.7
FvH4_6g40490 Fragaria vesca HOM05D004224 ORTHO05D006437 2.0e-12 75.9 137 38.0
FAN05G1563 Fragaria x ananassa HOM05D004224 ORTHO05D006437 2.0e-12 75.9 137 38.0
FAN10G1506 Fragaria x ananassa HOM05D004224 ORTHO05D006437 2.0e-12 75.9 137 38.0
FAN14G2615 Fragaria x ananassa HOM05D004224 ORTHO05D006437 2.0e-12 75.9 137 38.0
MD17G1118300 Malus domestica HOM05D004224 ORTHO05D006437 2.0e-12 75.9 137 38.0
Prupe.3G196100 Prunus persica HOM05D004224 ORTHO05D006437 2.0e-12 75.9 137 38.0
PGR031G1258 Punica granatum HOM05D004224 ORTHO05D006437 2.0e-12 75.9 137 38.7
HanXRQChr11g0329421 Helianthus annuus HOM05D004224 ORTHO05D006437 2.6e-12 75.5 144 37.5
Peaxi162Scf00612g00137 Petunia axillaris HOM05D004224 ORTHO05D006437 2.6e-12 75.5 137 38.7
Thecc.01G198200 Theobroma cacao HOM05D004224 ORTHO05D006437 2.6e-12 75.5 137 38.0
CAN.G437.10 Capsicum annuum HOM05D004224 ORTHO05D006437 3.4e-12 75.1 137 38.7
MBI15_g41427_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 3.4e-12 75.1 111 43.2
TWI75G0912 Tripterygium wilfordii HOM05D004224 ORTHO05D006437 3.4e-12 75.1 136 37.5
Gohir.D07G171000 Gossypium hirsutum HOM05D004224 ORTHO05D006437 4.4e-12 74.7 133 37.6
Gorai.001G190900 Gossypium raimondii HOM05D004224 ORTHO05D006437 4.4e-12 74.7 133 37.6
Lj6g0004652 Lotus japonicus HOM05D004224 ORTHO05D006437 4.4e-12 74.7 137 39.4
Phvul.006G005700 Phaseolus vulgaris HOM05D004224 ORTHO05D006437 4.4e-12 74.7 137 37.2
Potri.014G169300 Populus trichocarpa HOM05D004224 ORTHO05D006437 5.7e-12 74.3 133 39.1
Sed0013057 Sechium edule HOM05D004224 ORTHO05D006437 5.7e-12 74.3 137 38.0
AUR62014995 Chenopodium quinoa HOM05D004224 ORTHO05D006437 7.5e-12 73.9 134 38.1
Lsat_1_v5_gn_7_97380 Lactuca sativa HOM05D004224 ORTHO05D006437 7.5e-12 73.9 144 36.8
Rhsim06G0178000 Rhododendron simsii HOM05D004224 ORTHO05D006437 7.5e-12 73.9 137 38.7
ATR0751G026 Amborella trichopoda HOM05D004224 ORTHO05D006437 9.8e-12 73.6 137 37.2
Lj1A799T35 Lonicera japonica HOM05D004224 ORTHO05D006437 9.8e-12 73.6 137 38.7
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 1.3e-11 73.2 111 42.3
BcaB02g11239 Brassica carinata HOM05D004224 ORTHO05D006437 1.7e-11 72.8 55 76.4
CSS0035947 Camellia sinensis var. sinensis HOM05D004224 ORTHO05D006437 1.7e-11 72.8 137 37.2
Nn1g07539 Nelumbo nucifera HOM05D004224 ORTHO05D006437 1.7e-11 72.8 137 38.0
PSO541G4615 Papaver somniferum HOM05D004224 ORTHO05D006437 1.7e-11 72.8 134 39.6
PSO675G8516 Papaver somniferum HOM05D004224 ORTHO05D006437 1.7e-11 72.8 134 39.6
QL04p067662 Quercus lobata HOM05D004224 ORTHO05D006437 1.7e-11 72.8 137 38.0
GSVIVG01030117001 Vitis vinifera HOM05D004224 ORTHO05D006437 1.7e-11 72.8 133 38.3
Actinidia09800 Actinidia chinensis HOM05D004224 ORTHO05D006437 2.2e-11 72.4 137 38.0
Os02g0725200 Oryza sativa ssp. japonica HOM05D004224 ORTHO05D006437 2.2e-11 72.4 144 37.5
Sabra14G0129100 Salix brachista HOM05D004224 ORTHO05D006437 2.2e-11 72.4 133 38.3
Eucgr.A01370 Eucalyptus grandis HOM05D004224 ORTHO05D006437 2.8e-11 72.0 109 43.1
Medtr3g082690 Medicago truncatula HOM05D004224 ORTHO05D006437 2.8e-11 72.0 139 36.7
HPP92_018978 Vanilla planifolia HOM05D004224 ORTHO05D006437 3.7e-11 71.6 112 40.2
DCAR_019670 Daucus carota HOM05D004224 ORTHO05D006437 4.8e-11 71.2 141 36.9
Hma1.2p1_0629F.1_g192230 Hydrangea macrophylla HOM05D004224 ORTHO05D006437 4.8e-11 71.2 137 37.2
Oeu040454.1 Olea europaea HOM05D004224 ORTHO05D006437 4.8e-11 71.2 144 36.1
MSTRG.14913 Avicennia marina HOM05D004224 ORTHO05D006437 6.3e-11 70.9 111 40.5
Psat5g104720 Pisum sativum HOM05D004224 ORTHO05D006437 6.3e-11 70.9 144 35.4
vmacro12069 Vaccinium macrocarpon HOM05D004224 ORTHO05D006437 6.3e-11 70.9 133 37.6
Ca_16340_v3 Cicer arietinum L. HOM05D004224 ORTHO05D006437 1.1e-10 70.1 144 36.1
Dinv21312 Davidia involucrata HOM05D004224 ORTHO05D006437 1.1e-10 70.1 111 41.4
TAR629G0565 Trochodendron aralioides HOM05D004224 ORTHO05D006437 1.4e-10 69.7 137 37.2
MBI15_g45882_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 1.8e-10 69.3 111 40.5
Sc21g0000480 Simmondsia chinensis HOM05D004224 ORTHO05D006437 1.8e-10 69.3 137 36.5
Aqoxy7G02030 Aquilegia oxysepala HOM05D004224 ORTHO05D006437 3.1e-10 68.6 144 34.7
SGA_v2.0_scaffold73G24493 Striga asiatica HOM05D004224 ORTHO05D006437 3.1e-10 68.6 109 41.3
BcaB02g11236 Brassica carinata HOM05D004224 ORTHO05D006437 4.1e-10 68.2 64 59.4
CDE05G3447 Ceratophyllum demersum HOM05D004224 ORTHO05D006437 5.4e-10 67.8 137 35.8
Migut.M00055 Erythranthe guttata HOM05D004224 ORTHO05D006437 5.4e-10 67.8 137 35.0
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 2.7e-09 65.5 58 63.8
Gorai.004G061300 Gossypium raimondii HOM05D004224 ORTHO05D006437 1.5e-07 59.7 111 34.2
Gohir.A08G049300 Gossypium hirsutum HOM05D004224 ORTHO05D006437 2.5e-07 58.9 111 33.3


User provided reference genes

Program Settings