Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 5.6e-145 517.7 279 100.0
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 1.4e-143 513.1 280 99.6
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 4.1e-132 474.9 280 88.2
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 1.2e-131 473.4 280 90.0
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 7.3e-129 464.2 294 83.7
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 3.6e-112 408.7 285 75.1
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 3.6e-112 408.7 285 75.1
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.0e-98 364.0 320 62.8
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 2.5e-84 316.2 283 62.2
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 8.2e-80 301.2 294 56.8
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 6.9e-79 298.1 308 54.9
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.9e-76 290.0 326 49.7
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 1.8e-63 246.9 273 48.4
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 5.3e-63 245.4 289 48.1
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.0e-61 241.1 279 46.2
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 2.1e-59 233.4 316 48.7
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 8.0e-59 231.5 293 45.7
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 5.7e-57 225.3 300 49.0
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 5.7e-57 225.3 283 44.9
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 2.7e-54 216.5 291 49.1
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 3.5e-54 216.1 291 49.1
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 5.0e-53 212.2 291 42.6
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 6.3e-48 195.3 303 41.9
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.4e-47 194.1 270 43.7
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 1.9e-44 183.7 173 52.0
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 1.9e-44 183.7 173 52.0
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 1.6e-43 180.6 173 51.4
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 2.1e-43 180.3 175 50.3
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 5.2e-42 175.6 351 34.2
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 2.0e-41 173.7 173 50.3
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 9.8e-41 171.4 200 45.5
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 1.1e-39 167.9 261 46.7
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 1.1e-39 167.9 198 45.5
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 1.8e-39 167.2 259 47.1
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 1.8e-39 167.2 259 47.1
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 3.1e-39 166.4 187 46.0
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 3.1e-39 166.4 187 46.0
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 1.2e-38 164.5 196 46.9
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.2e-38 164.5 359 32.0
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 2.7e-38 163.3 195 46.7
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 4.5e-38 162.5 357 31.1
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 7.8e-38 161.8 196 44.9
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 7.8e-38 161.8 192 43.2
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 1.3e-37 161.0 184 47.3
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.7e-37 160.6 196 43.4
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.7e-37 160.6 261 46.0
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 3.8e-37 159.5 192 45.8
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 6.6e-37 158.7 196 44.4
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 1.5e-36 157.5 203 45.3
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 1.9e-36 157.1 194 44.8
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 1.9e-36 157.1 201 44.3
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 3.3e-36 156.4 216 43.1
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 4.3e-36 156.0 311 34.7
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 5.6e-36 155.6 194 43.8
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 9.5e-36 154.8 173 45.1
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 9.5e-36 154.8 322 34.2
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.2e-35 154.5 322 33.5
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 1.6e-35 154.1 206 44.7
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 1.6e-35 154.1 208 41.3
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 2.8e-35 153.3 367 30.8
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 2.8e-35 153.3 327 33.3
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.6e-35 152.9 176 47.7
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 3.6e-35 152.9 190 44.2
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 4.7e-35 152.5 322 33.9
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 1.0e-34 151.4 328 31.7
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 1.0e-34 151.4 203 43.8
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 1.4e-34 151.0 202 42.1
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 1.8e-34 150.6 194 41.2
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 2.3e-34 150.2 179 45.3
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 4.0e-34 149.4 193 43.0
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 4.0e-34 149.4 194 43.8
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 6.8e-34 148.7 325 32.6
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 6.8e-34 148.7 225 40.4
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 6.8e-34 148.7 180 44.4
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 8.9e-34 148.3 324 31.2
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 1.2e-33 147.9 194 42.3
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 1.2e-33 147.9 197 43.1
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 1.5e-33 147.5 197 40.6
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 1.5e-33 147.5 175 45.1
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.0e-33 147.1 321 33.6
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 2.0e-33 147.1 306 32.7
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 3.4e-33 146.4 227 41.4
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 3.4e-33 146.4 188 44.1
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 4.4e-33 146.0 303 33.3
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 4.4e-33 146.0 198 39.9
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 4.4e-33 146.0 192 43.8
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 4.4e-33 146.0 199 42.7
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 5.7e-33 145.6 202 42.1
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 5.7e-33 145.6 324 32.4
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 5.7e-33 145.6 192 43.8
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 1.7e-32 144.1 190 41.1
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 1.7e-32 144.1 179 41.3
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.7e-32 144.1 193 43.0
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 1.7e-32 144.1 193 42.5
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 3.7e-32 142.9 197 40.6
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 6.4e-32 142.1 192 41.1
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 3.2e-31 139.8 212 37.7
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 3.2e-31 139.8 190 40.5
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.2e-31 139.8 217 37.8
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 3.2e-31 139.8 171 44.4
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 3.2e-31 139.8 188 41.5
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 3.2e-31 139.8 193 40.9
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 4.1e-31 139.4 322 32.3
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 4.1e-31 139.4 190 40.0
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 7.0e-31 138.7 194 38.7
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 9.2e-31 138.3 259 35.5
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 3.5e-30 136.3 193 39.4
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 4.6e-30 136.0 198 41.9
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 7.8e-30 135.2 182 39.0
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 2.3e-29 133.7 199 38.7
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 5.0e-29 132.5 190 40.0
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 6.6e-29 132.1 190 40.5
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 6.6e-29 132.1 199 38.2
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 1.1e-28 131.3 212 38.2
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.1e-28 131.3 183 41.0
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 1.9e-28 130.6 205 35.1
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 2.5e-28 130.2 218 34.9
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 2.5e-28 130.2 172 43.0
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 2.5e-28 130.2 180 39.4
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 5.6e-28 129.0 180 40.0
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 2.8e-27 126.7 258 31.8
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 2.8e-27 126.7 209 34.4
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 1.8e-26 124.0 157 43.9
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 8.9e-26 121.7 171 39.8
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 8.9e-26 121.7 207 35.7
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 2.6e-25 120.2 289 30.4
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 1.7e-24 117.5 200 36.0
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 2.9e-24 116.7 261 28.0
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 8.3e-24 115.2 165 40.6
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.9e-23 114.0 182 35.2
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 4.1e-23 112.8 266 31.6
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 4.1e-23 112.8 251 32.7
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 5.4e-23 112.5 173 37.6
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 1.2e-22 111.3 181 38.7
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 1.6e-22 110.9 173 37.6
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.7e-21 107.5 171 39.2
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 3.0e-21 106.7 446 22.9
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 5.6e-20 102.4 148 43.2
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 5.6e-20 102.4 148 43.2
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 3.6e-19 99.8 160 39.4
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 4.7e-19 99.4 245 30.2
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 4.0e-18 96.3 74 55.4
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 4.0e-18 96.3 75 57.3
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 5.2e-18 95.9 122 41.8
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 8.9e-18 95.1 134 40.3
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 2.0e-17 94.0 167 37.1
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 2.2e-16 90.5 325 27.1
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 4.9e-16 89.4 170 30.6
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 6.4e-16 89.0 92 44.6
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 1.4e-15 87.8 74 52.7
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 1.2e-14 84.7 158 34.8
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 1.0e-13 81.6 136 39.0
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 1.3e-13 81.3 199 27.6
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 3.0e-13 80.1 122 38.5
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 1.6e-11 74.3 137 33.6
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 2.6e-09 67.0 143 33.6
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 9.9e-09 65.1 193 28.5
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 4.1e-07 59.7 57 54.4
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 7.1e-07 58.9 137 29.9
SHI00611 Sapria himalayana HOM05D003860 ORTHO05D004218 3.5e-06 56.6 41 56.1
BolC3t14251H Brassica oleracea HOM05D003860 ORTHO05D004218 4.6e-06 56.2 43 55.8
SEGI_19572 Sequoiadendron giganteum HOM05D001580 ORTHO05D001517 6.0e-06 55.8 167 28.1


User provided reference genes

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