Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 3.9e-37 157.5 75 100.0
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 3.9e-29 131.0 69 92.8
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 3.3e-28 127.9 69 88.4
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 3.3e-28 127.9 69 88.4
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 3.3e-28 127.9 69 88.4
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 7.4e-28 126.7 69 88.4
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 7.4e-28 126.7 69 88.4
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 3.1e-26 121.3 69 85.5
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 4.1e-26 120.9 68 85.3
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 4.1e-26 120.9 66 86.4
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 4.1e-26 120.9 66 86.4
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 1.5e-25 119.0 69 82.6
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 5.9e-25 117.1 69 79.7
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 7.7e-25 116.7 72 75.0
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 1.7e-24 115.5 69 79.7
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 1.7e-24 115.5 72 75.0
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 1.7e-24 115.5 69 79.7
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 6.5e-24 113.6 69 78.3
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 1.1e-23 112.8 69 79.7
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 1.0e-21 106.3 69 73.9
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 1.1e-20 102.8 69 71.0
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 1.1e-20 102.8 69 69.6
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 2.6e-20 101.7 65 70.8
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 2.6e-20 101.7 69 66.7
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 3.3e-20 101.3 66 68.2
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 4.4e-20 100.9 69 66.7
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 7.4e-20 100.1 66 66.7
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 9.7e-20 99.8 69 68.1
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 1.3e-19 99.4 69 69.6
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 1.3e-19 99.4 66 71.2
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 1.7e-19 99.0 66 71.2
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 1.7e-19 99.0 67 64.2
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 1.7e-19 99.0 66 65.2
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 2.2e-19 98.6 66 66.7
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 2.2e-19 98.6 67 64.2
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 2.2e-19 98.6 66 71.2
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 2.8e-19 98.2 66 66.7
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 3.7e-19 97.8 69 65.2
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 3.7e-19 97.8 66 69.7
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 3.7e-19 97.8 66 71.2
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 4.8e-19 97.4 66 66.7
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 4.8e-19 97.4 66 66.7
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 4.8e-19 97.4 66 68.2
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 4.8e-19 97.4 66 66.7
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 8.2e-19 96.7 66 66.7
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 8.2e-19 96.7 69 63.8
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 1.1e-18 96.3 66 66.7
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 1.1e-18 96.3 69 63.8
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 1.8e-18 95.5 65 67.7
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 2.4e-18 95.1 67 64.2
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 2.4e-18 95.1 71 59.2
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 3.1e-18 94.7 67 65.7
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 3.1e-18 94.7 66 66.7
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 3.1e-18 94.7 66 68.2
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 4.1e-18 94.4 66 65.2
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 4.1e-18 94.4 66 65.2
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 4.1e-18 94.4 64 67.2
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 4.1e-18 94.4 66 68.2
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 4.1e-18 94.4 66 63.6
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 4.1e-18 94.4 67 61.2
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 5.3e-18 94.0 69 59.4
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 5.3e-18 94.0 64 65.6
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 7.0e-18 93.6 66 65.2
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 7.0e-18 93.6 66 66.7
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 7.0e-18 93.6 66 63.6
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 7.0e-18 93.6 66 62.1
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 9.1e-18 93.2 65 64.6
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 9.1e-18 93.2 66 66.7
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 9.1e-18 93.2 69 59.4
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 9.1e-18 93.2 66 66.7
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 1.2e-17 92.8 66 65.2
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 1.2e-17 92.8 66 65.2
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 1.6e-17 92.4 64 64.1
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 2.6e-17 91.7 66 63.6
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 3.5e-17 91.3 66 63.6
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 3.5e-17 91.3 67 59.7
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 5.9e-17 90.5 66 62.1
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 5.9e-17 90.5 66 63.6
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 5.9e-17 90.5 66 63.6
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 7.7e-17 90.1 66 63.6
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.3e-16 89.4 66 62.1
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 1.3e-16 89.4 66 62.1
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 1.3e-16 89.4 69 63.8
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 1.3e-16 89.4 65 64.6
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 1.3e-16 89.4 67 64.2
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 1.3e-16 89.4 67 61.2
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 1.7e-16 89.0 66 62.1
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 2.2e-16 88.6 67 64.2
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 2.9e-16 88.2 66 62.1
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 5.0e-16 87.4 66 62.1
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 5.0e-16 87.4 66 62.1
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 5.0e-16 87.4 66 62.1
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 6.5e-16 87.0 66 60.6
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 6.5e-16 87.0 69 59.4
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 1.5e-15 85.9 66 60.6
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 1.5e-15 85.9 66 60.6
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 2.5e-15 85.1 68 58.8
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 2.5e-15 85.1 66 59.1
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 3.2e-15 84.7 71 56.3
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 3.2e-15 84.7 69 56.5
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 4.2e-15 84.3 66 56.1
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 5.5e-15 84.0 71 54.9
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 5.5e-15 84.0 67 58.2
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 5.5e-15 84.0 74 55.4
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 7.2e-15 83.6 66 56.1
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 7.2e-15 83.6 74 54.1
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 9.4e-15 83.2 66 59.1
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 1.2e-14 82.8 70 57.1
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 1.2e-14 82.8 66 57.6
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 2.1e-14 82.0 69 59.4
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 2.7e-14 81.6 73 56.2
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 3.6e-14 81.3 69 55.1
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 3.6e-14 81.3 73 54.8
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 4.7e-14 80.9 69 55.1
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 6.1e-14 80.5 71 56.3
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 1.0e-13 79.7 74 52.7
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 3.0e-13 78.2 74 50.0
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 4.0e-13 77.8 71 54.9
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 8.8e-13 76.6 66 56.1
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 8.8e-13 76.6 66 56.1
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 8.8e-13 76.6 66 56.1
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 2.8e-11 71.6 48 66.7
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 7.0e-10 67.0 66 53.0
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 6.5e-08 60.5 40 67.5
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 2.5e-07 58.5 78 42.3
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 9.4e-07 56.6 56 50.0
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.2e-06 56.2 65 44.6
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 8.0e-06 53.5 35 68.6


User provided reference genes

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