Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 2.6e-83 312.0 155 100.0
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 4.4e-83 311.2 154 99.4
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 4.4e-83 311.2 154 99.4
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 4.4e-83 311.2 154 99.4
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 4.4e-83 311.2 154 99.4
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 3.7e-82 308.1 154 98.1
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 6.3e-82 307.4 154 98.1
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 8.3e-82 307.0 154 97.4
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.4e-81 306.2 154 97.4
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 1.8e-81 305.8 154 96.8
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 3.1e-81 305.1 154 96.1
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 9.2e-81 303.5 154 96.1
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 1.2e-80 303.1 154 95.5
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 1.0e-79 300.1 173 89.0
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 2.3e-79 298.9 154 93.5
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 3.9e-79 298.1 154 93.5
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 1.5e-78 296.2 154 92.2
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 2.5e-78 295.4 154 92.2
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 4.3e-78 294.7 154 91.6
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 4.3e-78 294.7 154 90.3
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 4.3e-78 294.7 154 90.3
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 4.3e-78 294.7 154 90.3
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 7.3e-78 293.9 154 91.6
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 7.3e-78 293.9 154 91.6
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 9.5e-78 293.5 154 89.6
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 9.5e-78 293.5 154 90.3
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 1.2e-77 293.1 154 90.9
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 1.2e-77 293.1 154 91.6
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.2e-77 293.1 154 89.0
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 1.2e-77 293.1 154 89.6
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 1.6e-77 292.7 154 91.6
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 1.6e-77 292.7 154 91.6
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 1.6e-77 292.7 154 91.6
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 2.8e-77 292.0 154 90.9
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 2.8e-77 292.0 154 89.6
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 2.8e-77 292.0 154 90.9
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 3.6e-77 291.6 154 90.9
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 3.6e-77 291.6 151 92.7
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 4.7e-77 291.2 154 89.6
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 6.1e-77 290.8 154 90.9
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 6.1e-77 290.8 150 93.3
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 6.1e-77 290.8 154 90.3
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 6.1e-77 290.8 154 90.3
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 1.0e-76 290.0 154 89.6
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.4e-76 289.7 154 90.9
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 1.4e-76 289.7 154 89.0
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 1.8e-76 289.3 154 90.3
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.8e-76 289.3 154 90.9
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.8e-76 289.3 154 89.6
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 2.3e-76 288.9 154 89.0
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 3.1e-76 288.5 154 90.9
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 3.1e-76 288.5 154 89.6
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 3.1e-76 288.5 154 89.6
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 4.0e-76 288.1 154 89.6
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 4.0e-76 288.1 154 89.0
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 4.0e-76 288.1 154 89.6
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 5.2e-76 287.7 154 90.9
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 5.2e-76 287.7 154 89.0
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 8.9e-76 287.0 154 89.0
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 8.9e-76 287.0 154 87.7
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 8.9e-76 287.0 154 89.6
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.6e-75 285.4 167 83.2
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 2.6e-75 285.4 154 89.0
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 2.6e-75 285.4 154 89.0
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 2.6e-75 285.4 154 88.3
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 2.6e-75 285.4 154 87.7
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 3.4e-75 285.0 154 88.3
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 4.4e-75 284.6 153 88.9
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 4.4e-75 284.6 154 89.0
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 4.4e-75 284.6 154 87.7
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 4.4e-75 284.6 154 88.3
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 5.8e-75 284.3 154 87.7
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 5.8e-75 284.3 154 88.3
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 9.8e-75 283.5 154 87.0
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 9.8e-75 283.5 154 88.3
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 9.8e-75 283.5 154 88.3
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 1.3e-74 283.1 154 87.0
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 1.3e-74 283.1 153 89.5
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.3e-74 283.1 154 86.4
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 1.3e-74 283.1 163 85.9
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 1.3e-74 283.1 154 87.0
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 1.3e-74 283.1 154 86.4
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 1.3e-74 283.1 154 87.0
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 1.7e-74 282.7 152 89.5
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 1.7e-74 282.7 154 87.0
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 1.7e-74 282.7 154 88.3
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.2e-74 282.3 154 86.4
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 2.2e-74 282.3 154 87.0
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 2.2e-74 282.3 154 87.0
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 2.2e-74 282.3 154 86.4
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 3.7e-74 281.6 154 87.0
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 6.4e-74 280.8 154 87.7
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 8.3e-74 280.4 160 85.6
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 8.3e-74 280.4 154 87.0
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 1.1e-73 280.0 154 86.4
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 1.1e-73 280.0 154 86.4
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 1.1e-73 280.0 154 86.4
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 1.1e-73 280.0 154 87.0
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 1.4e-73 279.6 154 85.7
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 1.4e-73 279.6 154 88.3
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 1.9e-73 279.3 154 85.1
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 3.2e-73 278.5 153 87.6
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 3.2e-73 278.5 149 89.9
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 4.1e-73 278.1 154 86.4
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 1.6e-72 276.2 154 86.4
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 2.0e-72 275.8 154 87.0
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 3.5e-72 275.0 154 83.1
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 6.0e-72 274.2 168 81.0
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 6.0e-72 274.2 153 83.7
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 7.8e-72 273.9 154 83.8
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 7.8e-72 273.9 154 84.4
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 1.0e-71 273.5 152 84.9
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 1.3e-71 273.1 154 85.1
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 1.7e-71 272.7 154 83.1
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 2.3e-71 272.3 150 85.3
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 2.3e-71 272.3 150 85.3
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 2.3e-71 272.3 170 78.8
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 2.3e-71 272.3 152 84.2
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 3.0e-71 271.9 154 85.7
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 6.6e-71 270.8 175 77.1
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 8.6e-71 270.4 173 78.0
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 1.1e-70 270.0 152 86.2
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 1.2e-69 266.5 154 83.1
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 2.1e-69 265.8 148 84.5
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 4.7e-69 264.6 146 84.9
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 1.4e-68 263.1 153 80.4
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 4.4e-67 258.1 208 64.4
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 9.8e-67 256.9 151 80.1
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 3.7e-66 255.0 178 73.0
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.6e-64 249.6 153 77.1
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.6e-64 249.6 153 77.1
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 4.6e-64 248.1 153 76.5
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.3e-63 246.5 124 98.4
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 1.7e-63 246.1 152 77.6
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 3.0e-63 245.4 153 75.8
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 8.6e-63 243.8 153 83.0
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.8e-60 236.1 138 79.0
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 6.8e-60 234.2 154 78.6
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 3.7e-58 228.4 146 72.6
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.1e-57 226.9 154 74.0
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 2.7e-56 222.2 154 73.4
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 1.2e-53 213.4 154 72.1
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 3.6e-53 211.8 184 57.1
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.4e-52 209.9 133 74.4
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 9.2e-49 197.2 150 60.0
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 8.7e-47 190.7 106 84.0
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 4.3e-46 188.3 154 66.2
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.3e-45 186.8 125 71.2
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 2.9e-42 175.6 155 55.5
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 1.4e-41 173.3 154 60.4
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 3.9e-39 165.2 131 58.0
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 2.4e-36 156.0 85 88.2
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 2.2e-34 149.4 89 83.1
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 3.2e-33 145.6 70 95.7
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 3.3e-30 135.6 65 95.4
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 2.1e-29 132.9 69 88.4
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 4.5e-27 125.2 70 82.9
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 8.4e-26 120.9 64 85.9
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 1.1e-20 104.0 68 67.6
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 1.0e-18 97.4 52 88.5
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.1e-17 94.0 52 86.5
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 3.2e-17 92.4 49 89.8
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 4.3e-14 82.0 45 84.4
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 6.9e-12 74.7 47 74.5
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 2.6e-11 72.8 70 57.1
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 1.3e-10 70.5 109 44.0
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 6.7e-07 58.2 59 52.5


User provided reference genes

Program Settings