Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21876 Brassica carinata HOM05D007808 ORTHO05D009895 5.4e-223 777.3 390 100.0
C09p26260 Brassica napus HOM05D007808 ORTHO05D009895 5.4e-223 777.3 390 100.0
A09p20750 Brassica napus HOM05D007808 ORTHO05D009895 3.8e-208 728.0 392 93.6
BraA09t37679Z Brassica rapa HOM05D007808 ORTHO05D009895 1.0e-205 719.9 393 93.1
BcaB07g30982 Brassica carinata HOM05D007808 ORTHO05D009895 5.1e-197 691.0 402 88.3
BolC9t55528H Brassica oleracea HOM05D007808 ORTHO05D009895 1.1e-183 646.7 330 100.0
Carub.0008s0453 Capsella rubella HOM05D007808 ORTHO05D009895 2.5e-183 645.6 398 81.9
AL8G16070 Arabidopsis lyrata HOM05D007808 ORTHO05D009895 5.5e-183 644.4 398 81.2
AT5G44010 Arabidopsis thaliana HOM05D007808 ORTHO05D009895 1.0e-181 640.2 398 82.2
BcaC04g21877 Brassica carinata HOM05D007808 ORTHO05D009895 1.2e-177 626.7 323 98.8
Thhalv10003421m.g Eutrema salsugineum HOM05D007808 ORTHO05D009895 5.8e-148 528.1 396 71.0
CARHR179280 Cardamine hirsuta HOM05D007808 ORTHO05D009895 7.0e-146 521.2 344 79.9
THA.LOC104801132 Tarenaya hassleriana HOM05D007808 ORTHO05D009895 3.2e-138 495.7 396 64.6
QL09p041160 Quercus lobata HOM05D007808 ORTHO05D009895 9.0e-101 371.3 456 44.3
Ciclev10020041m.g Citrus clementina HOM05D007808 ORTHO05D009895 4.5e-100 369.0 462 44.6
Actinidia37545 Actinidia chinensis HOM05D007808 ORTHO05D009895 4.9e-99 365.5 447 43.2
Potri.014G192200 Populus trichocarpa HOM05D007808 ORTHO05D009895 1.9e-98 363.6 460 43.7
Lj2C1144T6 Lonicera japonica HOM05D007808 ORTHO05D009895 1.2e-97 360.9 454 41.9
TWI18G1304 Tripterygium wilfordii HOM05D007808 ORTHO05D009895 1.2e-97 360.9 477 43.2
Thecc.01G251900 Theobroma cacao HOM05D007808 ORTHO05D009895 8.7e-96 354.8 451 42.1
Atru.chr5.1818 Acer truncatum HOM05D007808 ORTHO05D009895 3.3e-95 352.8 465 41.7
Duzib138G1393 Durio zibethinus HOM05D007808 ORTHO05D009895 7.4e-95 351.7 462 40.7
Manes.13G040600 Manihot esculenta HOM05D007808 ORTHO05D009895 9.6e-95 351.3 454 41.9
Nn1g02938 Nelumbo nucifera HOM05D007808 ORTHO05D009895 1.6e-94 350.5 485 40.8
RcHm_v2.0_Chr6g0286881 Rosa chinensis HOM05D007808 ORTHO05D009895 4.8e-94 349.0 443 43.3
Gohir.A07G151000 Gossypium hirsutum HOM05D007808 ORTHO05D009895 1.8e-93 347.1 454 41.6
Gohir.D07G157600 Gossypium hirsutum HOM05D007808 ORTHO05D009895 4.5e-92 342.4 451 41.5
GSVIVG01028406001 Vitis vinifera HOM05D007808 ORTHO05D009895 1.7e-91 340.5 409 43.8
FvH4_2g20710 Fragaria vesca HOM05D007808 ORTHO05D009895 1.6e-89 334.0 443 42.4
Hma1.2p1_0273F.1_g109280 Hydrangea macrophylla HOM05D007808 ORTHO05D009895 2.7e-89 333.2 453 40.0
Aqoxy5G00155 Aquilegia oxysepala HOM05D007808 ORTHO05D009895 1.8e-88 330.5 436 41.7
Prupe.8G216500 Prunus persica HOM05D007808 ORTHO05D009895 1.5e-87 327.4 448 42.0
HanXRQChr04g0111341 Helianthus annuus HOM05D007808 ORTHO05D009895 5.7e-87 325.5 438 42.0
PSO832G1361 Papaver somniferum HOM05D007808 ORTHO05D009895 2.2e-86 323.6 444 40.8
COL.COLO4_10584 Corchorus olitorius HOM05D007808 ORTHO05D009895 3.7e-86 322.8 471 38.9
CANSAT01G0990 Cannabis sativa HOM05D007808 ORTHO05D009895 2.0e-84 317.0 458 39.5
TAR633G0330 Trochodendron aralioides HOM05D007808 ORTHO05D009895 1.0e-83 314.7 488 38.7
PGR031G1809 Punica granatum HOM05D007808 ORTHO05D009895 2.5e-82 310.1 448 38.2
Oeu039657.1 Olea europaea HOM05D007808 ORTHO05D009895 9.4e-82 308.1 463 37.6
FAN20G2653 Fragaria x ananassa HOM05D007808 ORTHO05D009895 3.6e-81 306.2 430 41.6
Sp2g08850 Schrenkiella parvula HOM05D007808 ORTHO05D009895 1.8e-80 303.9 342 55.6
Solyc09g072860.2 Solanum lycopersicum HOM05D007808 ORTHO05D009895 3.9e-80 302.8 454 38.3
Sopen09g028660 Solanum pennellii HOM05D007808 ORTHO05D009895 3.9e-80 302.8 454 38.3
FAN27G2486 Fragaria x ananassa HOM05D007808 ORTHO05D009895 5.1e-80 302.4 430 40.9
Migut.D00468 Erythranthe guttata HOM05D007808 ORTHO05D009895 6.7e-80 302.0 466 39.1
PSO764G0215 Papaver somniferum HOM05D007808 ORTHO05D009895 2.0e-79 300.4 381 42.0
Cc01_g17900 Coffea canephora HOM05D007808 ORTHO05D009895 6.3e-78 295.4 422 38.9
FAN24G0750 Fragaria x ananassa HOM05D007808 ORTHO05D009895 4.5e-76 289.3 411 41.6
FAN15G3261 Fragaria x ananassa HOM05D007808 ORTHO05D009895 5.9e-76 288.9 417 40.8
DCAR_018515 Daucus carota HOM05D007808 ORTHO05D009895 2.9e-75 286.6 442 37.6
Peaxi162Scf00415g00913 Petunia axillaris HOM05D007808 ORTHO05D009895 7.2e-74 282.0 436 38.1
Gorai.001G180500 Gossypium raimondii HOM05D007808 ORTHO05D009895 9.4e-74 281.6 474 36.7
MBI10_g30718_MAGBIO Magnolia biondii HOM05D007808 ORTHO05D009895 2.8e-70 270.0 457 36.3
SalBow4G3111 Salvia bowleyana HOM05D007808 ORTHO05D009895 1.0e-67 261.5 427 35.6
CSS0017675 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 1.1e-66 258.1 351 41.6
CSS0046569 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 1.1e-66 258.1 351 41.9
ATR0736G152 Amborella trichopoda HOM05D007808 ORTHO05D009895 4.0e-64 249.6 453 35.8
Sc05g0003060 Simmondsia chinensis HOM05D007808 ORTHO05D009895 2.2e-62 243.8 407 34.9
Nitab4.5_0010039g0030 Nicotiana tabacum HOM05D007808 ORTHO05D009895 1.4e-61 241.1 428 35.0
Os02g0814600 Oryza sativa ssp. japonica HOM05D007808 ORTHO05D009895 3.1e-61 240.0 448 32.6
HPP92_025831 Vanilla planifolia HOM05D007808 ORTHO05D009895 1.2e-60 238.0 459 31.4
Zm00001eb191560 Zea mays HOM05D007808 ORTHO05D009895 3.5e-60 236.5 446 33.4
CiPaw.04G189500 Carya illinoinensis HOM05D007808 ORTHO05D009895 5.0e-59 232.6 209 54.5
Nitab4.5_0000845g0040 Nicotiana tabacum HOM05D007808 ORTHO05D009895 6.5e-59 232.3 443 34.5
SGA_v2.0_scaffold1G00644 Striga asiatica HOM05D007808 ORTHO05D009895 6.5e-59 232.3 453 32.7
Lsat_1_v5_gn_8_92100 Lactuca sativa HOM05D007808 ORTHO05D009895 1.6e-52 211.1 384 34.1
Sabra14G0143900 Salix brachista HOM05D007808 ORTHO05D009895 1.6e-52 211.1 321 38.0
Eucgr.A01321 Eucalyptus grandis HOM05D007808 ORTHO05D009895 3.5e-52 209.9 368 34.5
CAN.G1395.2 Capsicum annuum HOM05D007808 ORTHO05D009895 2.8e-46 190.3 274 39.8
Cpa.g.sc87.15 Carica papaya HOM05D007808 ORTHO05D009895 2.0e-36 157.5 217 41.5
Haze_24684 Corylus avellana HOM05D007808 ORTHO05D009895 9.5e-34 148.7 138 50.7
CDE02G3651 Ceratophyllum demersum HOM05D007808 ORTHO05D009895 1.9e-26 124.4 293 30.0
Gorai.002G091900 Gossypium raimondii HOM05D007808 ORTHO05D009895 2.6e-23 114.0 135 41.5
CiPaw.04G189400 Carya illinoinensis HOM05D007808 ORTHO05D009895 4.4e-23 113.2 89 53.9
ECA236G2323 Erigeron canadensis HOM05D000728 ORTHO05D001586 9.8e-23 112.1 234 31.2
C07p26600 Brassica napus HOM05D007808 ORTHO05D009895 9.2e-21 105.5 106 56.6
BraA06t27623Z Brassica rapa HOM05D007808 ORTHO05D009895 3.5e-20 103.6 110 56.4
SEGI_27571 Sequoiadendron giganteum HOM05D007808 ORTHO05D009895 4.0e-16 90.1 224 26.3
Pp3c1_42330 Physcomitrium patens HOM05D007808 ORTHO05D009895 8.9e-16 89.0 417 23.7
PGSC0003DMG400003825 Solanum tuberosum HOM05D007808 ORTHO05D009895 2.4e-13 80.9 55 56.4
FAN27G0174 Fragaria x ananassa HOM05D007808 ORTHO05D009895 7.1e-13 79.3 54 57.4
AagrBONN_evm.TU.Sc2ySwM_117.2846 Anthoceros agrestis HOM05D007808 ORTHO05D009895 5.6e-10 69.7 111 34.2
CANSAT56G3388 Cannabis sativa HOM05D007808 ORTHO05D009895 2.1e-09 67.8 44 65.9
SMO367G0912 Selaginella moellendorffii HOM05D007808 ORTHO05D009895 6.4e-06 56.2 203 26.6


User provided reference genes

Program Settings