Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 3.7e-140 501.5 250 100.0
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 4.0e-126 454.9 250 93.2
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 4.4e-109 398.3 291 73.5
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 7.5e-109 397.5 291 73.5
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 5.8e-101 371.3 289 68.9
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 5.1e-97 358.2 292 67.5
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 6.6e-97 357.8 289 67.8
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 1.1e-96 357.1 293 66.9
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 5.6e-96 354.8 289 66.4
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 5.6e-96 354.8 289 66.4
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 1.2e-93 347.1 291 64.6
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 1.2e-93 347.1 291 64.6
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 7.6e-93 344.4 291 64.3
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 3.3e-88 328.9 294 61.9
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 1.1e-86 323.9 185 88.6
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 2.6e-85 319.3 269 65.8
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 2.2e-84 316.2 295 60.7
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 9.3e-75 284.3 274 59.5
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 1.2e-74 283.9 262 61.8
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.6e-69 266.2 271 57.2
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 6.7e-65 251.5 237 59.9
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 3.0e-57 226.1 294 44.9
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.5e-56 223.8 245 55.5
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 1.5e-56 223.8 298 47.3
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 1.9e-56 223.4 296 44.9
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 3.3e-56 222.6 296 44.9
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 6.9e-54 214.9 294 44.6
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 1.5e-53 213.8 297 44.1
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 3.4e-53 212.6 292 44.2
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 5.9e-53 211.8 292 44.2
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 1.7e-52 210.3 298 42.6
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 1.7e-52 210.3 299 44.1
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 2.2e-52 209.9 297 43.1
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 2.5e-51 206.5 294 42.2
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.2e-51 205.7 288 43.1
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 4.2e-51 205.7 294 42.2
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 5.5e-51 205.3 288 43.1
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 9.3e-51 204.5 294 42.5
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 8.7e-49 198.0 295 39.3
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 3.3e-48 196.1 294 39.5
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 7.4e-48 194.9 263 43.3
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 7.4e-48 194.9 288 43.8
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.6e-47 193.7 288 41.7
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 1.6e-47 193.7 295 40.0
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 3.7e-47 192.6 298 40.9
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 4.8e-47 192.2 295 39.7
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 4.8e-47 192.2 295 39.3
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 8.2e-47 191.4 294 39.1
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 8.2e-47 191.4 290 42.1
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 1.1e-46 191.0 277 43.3
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 1.1e-46 191.0 291 40.5
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 1.1e-46 191.0 295 42.4
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 4.1e-46 189.1 291 41.9
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 5.3e-46 188.7 269 42.0
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 1.2e-45 187.6 297 39.4
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 1.5e-45 187.2 296 39.2
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 1.5e-45 187.2 293 38.9
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 2.6e-45 186.4 286 41.3
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 3.4e-45 186.0 268 42.2
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 4.5e-45 185.7 299 40.5
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 1.0e-44 184.5 253 45.1
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 1.0e-44 184.5 295 39.0
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 2.9e-44 183.0 279 42.3
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 2.9e-44 183.0 290 38.3
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 3.8e-44 182.6 161 59.6
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 8.5e-44 181.4 297 39.4
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 1.1e-43 181.0 297 39.4
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 3.2e-43 179.5 298 38.9
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 7.2e-43 178.3 274 39.4
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 7.2e-43 178.3 293 38.9
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 1.2e-42 177.6 297 38.7
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 2.1e-42 176.8 290 40.0
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 4.6e-42 175.6 286 38.8
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 1.4e-41 174.1 292 39.7
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 1.8e-41 173.7 288 37.8
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 2.3e-41 173.3 262 41.2
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 6.7e-41 171.8 245 40.0
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 6.7e-41 171.8 249 41.4
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 1.5e-40 170.6 252 41.3
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 2.6e-40 169.9 265 38.5
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 2.6e-40 169.9 268 39.9
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 2.6e-40 169.9 291 38.1
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 2.6e-40 169.9 291 38.1
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 4.4e-40 169.1 297 37.7
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 9.7e-40 167.9 286 39.5
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 6.3e-39 165.2 302 37.1
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 6.3e-39 165.2 262 37.8
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 8.2e-39 164.9 289 38.1
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 8.2e-39 164.9 266 39.8
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 1.1e-38 164.5 303 37.6
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.1e-38 164.5 266 39.8
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.1e-38 164.5 266 40.6
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 2.4e-38 163.3 298 38.6
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 5.3e-38 162.2 277 38.6
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 2.6e-37 159.8 324 35.2
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 1.3e-36 157.5 183 47.5
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 5.0e-36 155.6 273 34.8
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 7.2e-35 151.8 274 35.0
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 9.4e-35 151.4 139 62.6
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 9.4e-35 151.4 277 36.8
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 1.0e-33 147.9 268 37.7
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 1.8e-33 147.1 289 32.9
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 8.8e-33 144.8 267 38.2
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 9.7e-32 141.4 146 55.5
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 9.7e-32 141.4 287 36.2
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 1.1e-30 137.9 146 54.8
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 4.1e-30 136.0 354 30.2
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 7.0e-30 135.2 91 79.1
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 7.0e-30 135.2 91 79.1
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 1.3e-28 131.0 146 51.4
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 1.3e-28 131.0 184 38.6
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 6.5e-28 128.6 269 35.3
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.0e-25 119.4 132 51.5
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 2.6e-24 116.7 176 38.6
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 7.5e-24 115.2 191 39.3
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 9.7e-24 114.8 136 45.6
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 1.4e-22 110.9 248 34.7
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 4.1e-22 109.4 257 30.4
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 1.0e-20 104.8 151 41.1
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 4.7e-18 95.9 206 31.6
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 1.4e-17 94.4 195 34.4
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 1.4e-17 94.4 90 57.8
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 8.8e-17 91.7 245 29.8
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 8.8e-17 91.7 210 31.4
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 3.4e-16 89.7 156 36.5
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 9.8e-16 88.2 297 25.9
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 9.8e-16 88.2 172 35.5
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 1.3e-15 87.8 129 41.1
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 4.1e-14 82.8 105 48.6
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 2.3e-12 77.0 123 35.8
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 5.0e-12 75.9 113 40.7
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 4.2e-11 72.8 140 36.4
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 1.0e-09 68.2 155 28.4
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 2.4e-06 57.0 73 41.1
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 7.0e-06 55.5 63 52.4


User provided reference genes

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