Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 6.5e-162 573.9 277 100.0
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 1.6e-160 569.3 278 99.6
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 1.6e-160 569.3 278 99.6
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 7.4e-158 560.5 278 98.2
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 7.4e-158 560.5 278 98.2
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 8.2e-157 557.0 277 96.4
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 1.7e-154 549.3 277 96.0
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 4.2e-153 544.7 279 94.3
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 5.5e-153 544.3 277 93.9
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 2.7e-152 542.0 277 93.5
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 6.7e-151 537.3 275 93.1
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 2.6e-150 535.4 277 91.7
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 1.3e-149 533.1 277 92.1
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 1.3e-149 533.1 277 92.1
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 1.3e-149 533.1 277 92.1
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 6.3e-149 530.8 277 90.3
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 8.2e-149 530.4 277 91.3
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 1.3e-146 523.1 277 89.9
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 9.1e-140 500.4 277 86.6
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 6.8e-127 457.6 280 76.8
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.5e-126 456.4 280 76.1
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 3.4e-126 455.3 280 75.7
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 5.7e-126 454.5 280 76.4
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 4.9e-125 451.4 280 75.4
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 1.7e-122 443.0 284 75.0
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.7e-122 443.0 282 76.2
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 8.6e-122 440.7 281 74.4
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 1.1e-121 440.3 280 73.9
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 1.4e-119 433.3 280 75.0
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 3.1e-119 432.2 280 74.3
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 1.7e-117 426.4 284 72.9
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 4.9e-117 424.9 276 72.1
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 4.1e-116 421.8 322 65.8
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 1.2e-115 420.2 280 71.4
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.6e-115 419.9 280 71.8
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 7.8e-115 417.5 282 69.5
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 1.0e-114 417.2 281 71.2
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 1.3e-114 416.8 279 71.0
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 1.3e-114 416.8 281 70.8
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 1.7e-114 416.4 282 72.7
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 5.0e-114 414.8 282 71.6
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 5.0e-114 414.8 280 68.2
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 1.1e-113 413.7 280 71.4
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 2.8e-112 409.1 280 69.3
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 2.8e-112 409.1 280 69.3
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 6.2e-112 407.9 280 70.0
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 1.4e-111 406.8 280 68.6
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 1.4e-111 406.8 281 69.8
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 1.4e-111 406.8 282 69.5
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 1.4e-111 406.8 280 69.6
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.5e-110 403.3 268 68.7
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 4.4e-110 401.7 289 66.1
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 4.4e-110 401.7 280 67.9
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 5.8e-110 401.4 277 69.0
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 9.8e-110 400.6 283 68.6
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 9.8e-110 400.6 283 68.6
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 2.9e-109 399.1 280 67.1
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 8.3e-109 397.5 282 67.0
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 1.1e-108 397.1 280 67.1
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 1.1e-108 397.1 278 66.9
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 1.9e-108 396.4 280 65.4
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 5.4e-108 394.8 280 66.8
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 7.1e-108 394.4 290 64.8
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 7.1e-108 394.4 279 66.7
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 1.6e-107 393.3 277 67.1
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 1.0e-106 390.6 280 65.0
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 1.0e-106 390.6 280 66.8
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 1.0e-106 390.6 279 66.7
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 2.3e-106 389.4 280 68.6
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 5.1e-106 388.3 278 66.9
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 8.6e-106 387.5 278 65.5
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 3.3e-105 385.6 204 92.2
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 2.1e-104 382.9 281 66.5
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 1.4e-103 380.2 238 76.5
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 4.0e-103 378.6 284 62.7
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 4.0e-103 378.6 284 62.7
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 6.8e-103 377.9 286 64.3
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 2.6e-102 375.9 278 65.5
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 5.8e-102 374.8 238 75.6
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 5.8e-102 374.8 316 58.2
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 1.4e-100 370.2 262 66.8
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 9.2e-100 367.5 305 58.7
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 3.5e-99 365.5 236 73.3
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 6.0e-99 364.8 392 49.2
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 1.7e-98 363.2 280 63.9
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 3.3e-97 359.0 354 52.0
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 2.1e-96 356.3 273 63.4
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 3.1e-95 352.4 385 48.8
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 1.2e-94 350.5 309 56.0
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 2.2e-93 346.3 283 59.4
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 6.4e-93 344.7 322 55.0
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 7.1e-92 341.3 279 62.7
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.2e-91 340.5 281 61.9
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 2.1e-91 339.7 282 62.1
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 1.7e-90 336.7 289 59.2
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 6.6e-90 334.7 270 60.7
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 1.4e-87 327.0 237 65.4
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 4.0e-87 325.5 256 59.4
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 1.5e-86 323.6 280 58.6
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 3.8e-77 292.4 258 58.5
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 2.1e-75 286.6 275 52.4
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 4.6e-75 285.4 186 71.5
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 1.3e-74 283.9 188 70.7
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 6.7e-74 281.6 268 52.2
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 3.3e-73 279.3 304 47.4
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 3.7e-72 275.8 187 68.4
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 4.8e-72 275.4 187 68.4
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 1.4e-71 273.9 326 48.2
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 4.1e-63 245.7 252 47.6
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 1.9e-60 236.9 257 45.5
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 1.3e-58 230.7 142 73.2
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 2.2e-56 223.4 255 44.7
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 4.8e-56 222.2 191 60.2
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 1.5e-54 217.2 200 56.0
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 2.0e-41 173.7 91 89.0
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 4.5e-38 162.5 114 67.5
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 4.5e-38 162.5 114 67.5
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 1.0e-34 151.4 117 65.8
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 9.1e-31 138.3 95 69.5
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 2.2e-29 133.7 95 69.5
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 3.8e-29 132.9 93 66.7
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 1.1e-28 131.3 90 66.7
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 1.6e-27 127.5 66 93.9
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 2.1e-27 127.1 97 61.9
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 5.2e-26 122.5 82 70.7
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.5e-25 120.9 94 58.5
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 4.8e-24 115.9 75 72.0
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 4.5e-22 109.4 112 50.0
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 7.7e-22 108.6 94 59.6
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 3.2e-20 103.2 62 75.8
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 7.2e-20 102.1 100 50.0
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 9.5e-20 101.7 61 72.1
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.8e-18 97.4 49 79.6
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 4.0e-18 96.3 51 82.4
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.8e-11 73.6 57 59.6
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 6.1e-11 72.4 38 78.9
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 2.3e-10 70.5 35 77.1
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.3e-10 70.5 46 67.4
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 6.8e-10 68.9 65 53.8
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 1.2e-09 68.2 33 81.8
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 1.2e-09 68.2 33 81.8
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 4.9e-08 62.8 55 49.1


User provided reference genes

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