Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 1.0e-136 490.0 235 100.0
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 6.6e-131 470.7 248 92.7
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 6.6e-131 470.7 248 92.3
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 8.3e-118 427.2 248 84.3
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 1.1e-117 426.8 248 83.5
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 4.6e-116 421.4 248 81.9
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 8.6e-115 417.2 248 81.9
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 1.9e-114 416.0 248 82.3
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 1.9e-114 416.0 248 82.3
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 1.9e-114 416.0 248 82.3
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 2.5e-114 415.6 248 81.9
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 2.5e-114 415.6 248 81.9
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 3.6e-113 411.8 248 80.6
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 1.8e-112 409.5 248 81.0
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 1.8e-112 409.5 248 81.0
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 3.7e-110 401.7 256 76.6
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 1.2e-105 386.7 248 74.6
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 2.6e-103 379.0 248 69.8
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 1.7e-102 376.3 248 69.8
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 2.2e-102 375.9 248 70.2
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 4.9e-102 374.8 248 69.0
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 4.2e-101 371.7 248 69.8
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 5.4e-101 371.3 248 68.1
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 2.7e-100 369.0 248 67.7
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 1.0e-99 367.1 248 68.5
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 1.0e-99 367.1 248 67.7
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 1.0e-99 367.1 248 66.9
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 2.3e-99 365.9 248 67.3
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 3.0e-99 365.5 248 66.5
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 6.6e-99 364.4 248 66.5
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 6.6e-99 364.4 248 67.7
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 1.5e-98 363.2 248 68.1
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 2.5e-98 362.5 248 69.0
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 2.5e-98 362.5 248 66.9
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 4.3e-98 361.7 248 67.3
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 7.3e-98 360.9 248 68.5
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 1.3e-97 360.1 248 66.1
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 1.6e-97 359.8 248 68.1
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 1.6e-97 359.8 248 66.9
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 1.6e-97 359.8 248 66.9
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 1.6e-97 359.8 248 68.5
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 2.8e-97 359.0 248 66.5
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 4.8e-97 358.2 248 66.5
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 6.2e-97 357.8 248 67.7
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 8.1e-97 357.5 248 65.3
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 1.1e-96 357.1 248 66.5
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 1.4e-96 356.7 248 67.7
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 1.8e-96 356.3 248 66.5
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 1.8e-96 356.3 248 66.1
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 1.8e-96 356.3 248 65.7
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 1.8e-96 356.3 264 62.9
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 1.8e-96 356.3 248 64.9
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 2.4e-96 355.9 248 65.7
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 2.4e-96 355.9 248 64.1
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.1e-96 355.5 248 65.7
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 4.0e-96 355.1 248 65.7
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 5.3e-96 354.8 248 65.7
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 5.3e-96 354.8 248 65.7
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 6.9e-96 354.4 247 67.6
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 9.0e-96 354.0 248 66.9
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 1.2e-95 353.6 248 65.3
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 1.2e-95 353.6 248 67.3
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 1.2e-95 353.6 248 65.3
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 1.2e-95 353.6 248 65.7
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 1.2e-95 353.6 248 65.7
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 1.5e-95 353.2 248 67.3
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 2.0e-95 352.8 248 66.5
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 2.0e-95 352.8 247 67.2
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.0e-95 352.8 248 65.3
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 2.0e-95 352.8 236 68.2
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 2.6e-95 352.4 247 66.8
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 2.6e-95 352.4 252 64.7
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 2.6e-95 352.4 248 66.1
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 3.4e-95 352.1 248 66.9
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 3.4e-95 352.1 248 65.7
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 5.8e-95 351.3 248 65.3
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.3e-94 350.1 248 64.9
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 1.7e-94 349.7 248 65.7
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 1.1e-93 347.1 249 65.9
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 2.4e-93 345.9 248 65.3
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 5.4e-93 344.7 248 64.5
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 1.6e-92 343.2 248 64.9
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 2.1e-92 342.8 256 63.3
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 3.5e-92 342.0 248 63.7
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 1.3e-91 340.1 249 63.5
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 7.4e-90 334.3 248 62.1
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 2.8e-89 332.4 248 63.7
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 3.6e-89 332.0 248 63.3
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 6.2e-89 331.3 248 61.7
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 5.3e-88 328.2 247 63.6
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 5.3e-88 328.2 248 63.3
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 6.9e-88 327.8 236 74.2
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 9.0e-88 327.4 249 63.1
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 2.6e-87 325.9 277 57.8
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 2.6e-87 325.9 279 58.4
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 9.9e-87 323.9 248 60.5
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 9.9e-87 323.9 248 60.1
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 1.4e-85 320.1 249 61.0
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 1.4e-85 320.1 249 61.0
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 2.1e-84 316.2 246 59.3
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 6.0e-84 314.7 218 67.9
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 1.0e-83 313.9 263 56.3
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 8.7e-83 310.8 246 58.1
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 4.8e-81 305.1 234 71.4
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 6.9e-80 301.2 218 65.1
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 9.0e-80 300.8 178 73.0
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 9.0e-80 300.8 248 58.1
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 1.6e-76 290.0 245 55.9
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 6.7e-75 284.6 251 55.0
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 2.1e-73 279.6 167 70.7
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 1.4e-72 276.9 167 70.1
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 2.4e-72 276.2 250 53.2
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 9.0e-72 274.2 251 52.2
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 5.9e-71 271.6 166 69.9
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 3.2e-69 265.8 167 67.7
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 1.8e-67 260.0 255 51.0
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 3.4e-63 245.7 132 78.0
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 4.5e-63 245.4 377 37.9
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 2.9e-62 242.7 376 37.8
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 3.9e-59 232.3 209 54.1
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 2.5e-58 229.6 250 43.6
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 1.3e-57 227.3 261 45.2
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 3.7e-57 225.7 259 44.4
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 7.4e-50 201.4 141 58.9
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 2.5e-45 186.4 254 40.6
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 4.8e-41 172.2 98 74.5
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.0e-39 166.8 135 60.0
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 1.6e-36 157.1 228 37.3
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 3.6e-36 156.0 99 76.8
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 1.6e-28 130.6 121 56.2
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 2.7e-28 129.8 75 72.0
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 1.2e-26 124.4 71 69.0
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 1.2e-26 124.4 71 69.0
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 1.3e-25 120.9 71 69.0
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.2e-12 77.8 75 56.0
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 1.6e-12 77.4 52 63.5
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.6e-12 77.4 76 55.3
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 3.6e-12 76.3 91 45.1
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 8.0e-12 75.1 85 48.2
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 2.3e-11 73.6 80 48.8
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 4.9e-09 65.9 117 32.5
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 1.3e-06 57.8 52 55.8
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 8.6e-06 55.1 58 46.6


User provided reference genes

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