Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 1.9e-162 575.9 301 100.0
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 2.7e-145 518.8 322 87.9
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 6.0e-145 517.7 322 88.2
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 1.1e-130 470.3 284 89.1
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 2.7e-129 465.7 322 82.0
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 6.0e-129 464.5 326 79.4
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 3.4e-124 448.7 272 88.2
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 3.2e-122 442.2 317 78.5
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 4.2e-122 441.8 327 77.4
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 7.1e-122 441.0 326 76.4
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 1.2e-121 440.3 324 76.5
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 1.6e-121 439.9 318 76.1
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 1.0e-120 437.2 318 75.8
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 3.0e-120 435.6 327 76.8
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 9.7e-119 430.6 322 75.8
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 5.0e-115 418.3 325 74.5
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 8.5e-115 417.5 324 74.4
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 2.3e-112 409.5 324 71.9
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 2.6e-108 396.0 297 78.1
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 1.0e-99 367.5 320 64.7
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 2.8e-94 349.4 243 73.3
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 1.8e-93 346.7 297 63.6
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 1.2e-92 344.0 252 70.2
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 2.0e-92 343.2 249 70.7
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 2.6e-92 342.8 271 66.4
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 2.6e-92 342.8 251 68.9
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 3.5e-92 342.4 243 72.0
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 4.5e-92 342.0 250 71.2
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 7.7e-92 341.3 248 71.8
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 2.9e-91 339.3 241 71.4
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 3.8e-91 339.0 290 63.8
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 6.5e-91 338.2 223 76.7
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 8.5e-91 337.8 246 72.0
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 1.1e-90 337.4 249 70.7
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 2.5e-90 336.3 255 70.2
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 9.4e-90 334.3 284 63.7
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 1.2e-89 334.0 314 59.6
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 1.6e-89 333.6 244 69.7
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 2.7e-89 332.8 252 68.3
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 3.6e-89 332.4 310 59.7
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 4.7e-89 332.0 297 61.3
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 4.7e-89 332.0 314 59.2
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 4.7e-89 332.0 283 64.7
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 3.0e-88 329.3 250 68.0
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 3.0e-88 329.3 321 58.9
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 8.8e-88 327.8 316 57.9
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 2.0e-87 326.6 266 63.5
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 2.6e-87 326.2 265 63.8
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 2.6e-87 326.2 250 67.2
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 2.6e-87 326.2 239 70.7
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 5.7e-87 325.1 285 63.5
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 9.7e-87 324.3 311 58.5
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 1.3e-86 323.9 319 58.0
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 1.3e-86 323.9 223 71.3
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 1.7e-86 323.6 223 72.6
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 1.7e-86 323.6 223 72.6
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 2.2e-86 323.2 244 68.9
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 2.8e-86 322.8 313 59.4
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 4.8e-86 322.0 303 60.1
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 1.1e-85 320.9 263 62.4
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 2.4e-85 319.7 205 77.6
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 4.1e-85 318.9 223 72.6
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 2.7e-84 316.2 257 66.1
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 3.5e-84 315.8 300 58.7
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 3.5e-84 315.8 268 62.7
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 4.5e-84 315.5 298 61.1
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 5.9e-84 315.1 263 63.9
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 1.0e-83 314.3 299 61.9
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 1.3e-83 313.9 236 68.2
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 1.3e-83 313.9 226 71.2
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 1.3e-83 313.9 223 70.4
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 1.1e-82 310.8 295 60.7
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 2.5e-82 309.7 300 59.0
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 2.5e-82 309.7 287 58.5
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 1.2e-81 307.4 230 69.1
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 1.6e-81 307.0 335 55.2
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 2.1e-81 306.6 230 68.7
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 3.6e-81 305.8 253 64.8
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 4.7e-81 305.4 259 62.5
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 8.0e-81 304.7 291 58.8
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 1.8e-80 303.5 249 64.7
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 3.0e-80 302.8 226 69.5
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 3.0e-80 302.8 273 60.8
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 1.2e-79 300.8 245 66.5
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 2.0e-79 300.1 247 64.0
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 2.6e-79 299.7 255 62.0
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 2.6e-79 299.7 196 76.0
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 3.4e-79 299.3 208 72.1
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 4.4e-79 298.9 193 77.7
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.1e-77 294.3 199 73.9
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 1.1e-77 294.3 245 63.7
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 1.8e-77 293.5 246 63.4
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 3.1e-77 292.7 203 74.4
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 1.2e-76 290.8 234 65.8
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 1.6e-76 290.4 202 72.3
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 2.7e-76 289.7 248 62.5
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 6.6e-75 285.0 312 54.2
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 1.9e-74 283.5 284 57.7
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 3.3e-74 282.7 282 55.3
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.0e-72 277.7 199 72.9
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 1.0e-72 277.7 250 60.8
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 2.6e-71 273.1 278 55.4
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 6.6e-67 258.5 280 51.4
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 7.3e-66 255.0 192 64.6
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 2.6e-63 246.5 198 64.1
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 4.9e-62 242.3 204 58.3
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 1.7e-59 233.8 200 57.5
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 3.3e-58 229.6 194 57.7
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 4.3e-58 229.2 209 55.0
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 6.4e-54 215.3 194 56.2
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 5.4e-53 212.2 172 62.8
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 3.5e-52 209.5 148 71.6
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 4.7e-33 146.0 110 65.5
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 2.6e-31 140.2 192 44.3
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 3.0e-27 126.7 175 44.6
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 1.1e-26 124.8 165 49.7
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 2.3e-19 100.5 74 68.9
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 1.5e-18 97.8 74 64.9
DCAR_001229 Daucus carota HOM05D006025 ORTHO05D008547 7.4e-10 68.9 50 66.0
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 3.1e-08 63.5 56 64.3
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 5.8e-07 59.3 118 39.8


User provided reference genes

Program Settings