Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21504 Brassica carinata HOM05D000916 ORTHO05D011795 1.3e-54 216.1 103 100.0
BcaC02g08704 Brassica carinata HOM05D000916 ORTHO05D011795 7.8e-52 206.8 103 95.1
BcaC04g21401 Brassica carinata HOM05D000916 ORTHO05D011795 2.9e-51 204.9 102 94.1
C09p31030 Brassica napus HOM05D000916 ORTHO05D011795 5.0e-51 204.1 107 93.5
BolC9t55962H Brassica oleracea HOM05D000916 ORTHO05D011795 5.6e-50 200.7 109 89.9
BolC9t56071H Brassica oleracea HOM05D000916 ORTHO05D011795 4.7e-49 197.6 108 88.9
BolC3t18010H Brassica oleracea HOM05D000916 ORTHO05D011795 6.1e-49 197.2 108 88.9
C03p57340 Brassica napus HOM05D000916 ORTHO05D011795 8.0e-49 196.8 107 89.7
C04p51520 Brassica napus HOM05D000916 ORTHO05D011795 2.3e-48 195.3 108 88.0
C02p41330 Brassica napus HOM05D000916 ORTHO05D011795 3.1e-48 194.9 107 89.7
C07p62980 Brassica napus HOM05D000916 ORTHO05D011795 4.0e-48 194.5 109 87.2
BolC7t46709H Brassica oleracea HOM05D000916 ORTHO05D011795 4.0e-48 194.5 109 87.2
BcaC01g02997 Brassica carinata HOM05D000916 ORTHO05D011795 1.1e-45 186.4 103 88.3
C09p35340 Brassica napus HOM05D000916 ORTHO05D011795 5.0e-43 177.6 119 76.5
BolC9t56376H Brassica oleracea HOM05D000916 ORTHO05D011795 5.0e-43 177.6 119 76.5
A04p07570 Brassica napus HOM05D000916 ORTHO05D011795 1.9e-42 175.6 110 80.9
BcaB08g36567 Brassica carinata HOM05D000916 ORTHO05D008653 1.6e-41 172.6 110 75.5
BcaC04g19381 Brassica carinata HOM05D000916 ORTHO05D008653 2.3e-40 168.7 110 73.6
A03p66130 Brassica napus HOM05D000916 ORTHO05D008653 2.3e-40 168.7 110 73.6
A10p19910 Brassica napus HOM05D000916 ORTHO05D008653 2.3e-40 168.7 110 73.6
C09p56310 Brassica napus HOM05D000916 ORTHO05D008653 2.3e-40 168.7 110 73.6
BolC9t58500H Brassica oleracea HOM05D000916 ORTHO05D008653 2.3e-40 168.7 110 73.6
BraA03t15665Z Brassica rapa HOM05D000916 ORTHO05D008653 2.3e-40 168.7 110 73.6
BraA10t44066Z Brassica rapa HOM05D000916 ORTHO05D008653 2.3e-40 168.7 110 73.6
BolC8t48497H Brassica oleracea HOM05D000916 ORTHO05D011795 3.1e-40 168.3 93 86.0
Sp6g24550 Schrenkiella parvula HOM05D000916 ORTHO05D008653 1.7e-38 162.5 110 70.0
Thhalv10013775m.g Eutrema salsugineum HOM05D000916 ORTHO05D008653 3.7e-38 161.4 111 72.1
C05p09190 Brassica napus HOM05D000916 ORTHO05D011795 2.4e-37 158.7 86 87.2
AT5G19850 Arabidopsis thaliana HOM05D000916 ORTHO05D008653 2.3e-35 152.1 98 72.4
Carub.0006s1820 Capsella rubella HOM05D000916 ORTHO05D008653 5.1e-35 151.0 98 71.4
AL6G31370 Arabidopsis lyrata HOM05D000916 ORTHO05D008653 6.6e-35 150.6 98 72.4
CARHR193030 Cardamine hirsuta HOM05D000916 ORTHO05D008653 8.6e-35 150.2 98 71.4
Medtr5g056200 Medicago truncatula HOM05D000916 ORTHO05D008653 3.3e-34 148.3 109 61.5
Duzib168G0456 Durio zibethinus HOM05D000916 ORTHO05D008653 5.6e-34 147.5 110 60.0
Thecc.09G208000 Theobroma cacao HOM05D000916 ORTHO05D008653 9.5e-34 146.7 110 60.9
Actinidia30433 Actinidia chinensis HOM05D000916 ORTHO05D008653 3.6e-33 144.8 109 60.6
CiPaw.14G135800 Carya illinoinensis HOM05D000916 ORTHO05D008653 3.6e-33 144.8 110 60.0
COL.COLO4_35043 Corchorus olitorius HOM05D000916 ORTHO05D008653 3.6e-33 144.8 101 63.4
Gorai.013G244300 Gossypium raimondii HOM05D000916 ORTHO05D008653 3.6e-33 144.8 101 63.4
Prupe.6G143300 Prunus persica HOM05D000916 ORTHO05D008653 3.6e-33 144.8 106 61.3
Aa31LG9G12530 Aethionema arabicum HOM05D000916 ORTHO05D008653 4.7e-33 144.4 99 65.7
Ca_13814_v3 Cicer arietinum L. HOM05D000916 ORTHO05D008653 4.7e-33 144.4 106 59.4
Ciclev10015550m.g Citrus clementina HOM05D000916 ORTHO05D008653 4.7e-33 144.4 99 64.6
Psat2g088040 Pisum sativum HOM05D000916 ORTHO05D008653 4.7e-33 144.4 103 61.2
Cpa.g.sc119.56 Carica papaya HOM05D000916 ORTHO05D008653 6.2e-33 144.1 100 63.0
TPR.G38291 Trifolium pratense HOM05D000916 ORTHO05D008653 6.2e-33 144.1 104 60.6
THA.LOC104811067 Tarenaya hassleriana HOM05D000916 ORTHO05D008653 8.1e-33 143.7 103 63.1
Eucgr.B03607 Eucalyptus grandis HOM05D000916 ORTHO05D008653 1.1e-32 143.3 104 62.5
Lj2g0000465 Lotus japonicus HOM05D000916 ORTHO05D008653 1.1e-32 143.3 103 61.2
Nitab4.5_0000978g0180 Nicotiana tabacum HOM05D000916 ORTHO05D008653 1.1e-32 143.3 99 65.7
Solyc12g098660.3 Solanum lycopersicum HOM05D000916 ORTHO05D008653 1.1e-32 143.3 99 65.7
CANSAT54G1745 Cannabis sativa HOM05D000916 ORTHO05D008653 1.8e-32 142.5 104 61.5
Hund21633 Selenicereus undatus HOM05D000916 ORTHO05D008653 1.8e-32 142.5 106 59.4
FAN25G1294 Fragaria x ananassa HOM05D000916 ORTHO05D008653 2.3e-32 142.1 106 59.4
RcHm_v2.0_Chr5g0083221 Rosa chinensis HOM05D000916 ORTHO05D008653 2.3e-32 142.1 106 59.4
Sopen12g033410 Solanum pennellii HOM05D000916 ORTHO05D008653 2.3e-32 142.1 99 64.6
GSVIVG01025450001 Vitis vinifera HOM05D000916 ORTHO05D008653 2.3e-32 142.1 106 59.4
Gohir.A13G210000 Gossypium hirsutum HOM05D000916 ORTHO05D008653 3.1e-32 141.7 101 62.4
Oeu000521.1 Olea europaea HOM05D000284 ORTHO05D000805 3.1e-32 141.7 106 61.3
Cfa009571 Carpinus fangiana HOM05D000916 ORTHO05D008653 4.0e-32 141.4 110 57.3
CSS0001504 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D008653 5.2e-32 141.0 106 59.4
Nitab4.5_0004758g0020 Nicotiana tabacum HOM05D000916 ORTHO05D008653 5.2e-32 141.0 99 64.6
PGSC0003DMG402004581 Solanum tuberosum HOM05D000916 ORTHO05D008653 5.2e-32 141.0 99 64.6
FvH4_3g45410 Fragaria vesca HOM05D000916 ORTHO05D008653 6.8e-32 140.6 106 58.5
FAN11G2367 Fragaria x ananassa HOM05D000916 ORTHO05D008653 6.8e-32 140.6 106 58.5
FAN21G1400 Fragaria x ananassa HOM05D000916 ORTHO05D008653 6.8e-32 140.6 106 58.5
Glyma.18G000300 Glycine max HOM05D000916 ORTHO05D008653 6.8e-32 140.6 104 59.6
Atru.chr3.2085 Acer truncatum HOM05D000916 ORTHO05D008653 8.9e-32 140.2 99 63.6
ECA248G2975 Erigeron canadensis HOM05D000916 ORTHO05D008653 8.9e-32 140.2 99 62.6
Os07g0575800 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D008653 8.9e-32 140.2 99 62.6
Rhsim01G0184600 Rhododendron simsii HOM05D000916 ORTHO05D008653 8.9e-32 140.2 106 58.5
CSS0014256 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D008653 1.2e-31 139.8 104 60.6
CAN.G767.1 Capsicum annuum HOM05D000916 ORTHO05D008653 1.2e-31 139.8 99 63.6
Lj1A524T16 Lonicera japonica HOM05D000916 ORTHO05D008653 1.2e-31 139.8 106 61.3
MD11G1007800 Malus domestica HOM05D000916 ORTHO05D008653 1.5e-31 139.4 99 62.6
Cc03_g10030 Coffea canephora HOM05D000916 ORTHO05D008653 2.0e-31 139.0 99 63.6
FAN16G2348 Fragaria x ananassa HOM05D000916 ORTHO05D008653 2.0e-31 139.0 106 58.5
MBI04_g09718_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D008653 2.0e-31 139.0 107 57.9
Nn7g35884 Nelumbo nucifera HOM05D000916 ORTHO05D008653 2.0e-31 139.0 99 60.6
Zm00001eb325320 Zea mays HOM05D000916 ORTHO05D008653 2.0e-31 139.0 99 62.6
arahy.Tifrunner.gnm1.ann1.SDBE87 Arachis hypogaea HOM05D000916 ORTHO05D008653 3.4e-31 138.3 106 59.4
AUR62019171 Chenopodium quinoa HOM05D000916 ORTHO05D008653 3.4e-31 138.3 103 61.2
Ah.04g161500 Amaranthus hybridus HOM05D001490 ORTHO05D008653 4.4e-31 137.9 99 63.6
EL10Ac4g10376 Beta vulgaris HOM05D000916 ORTHO05D008653 4.4e-31 137.9 99 61.6
Prupe.6G005000 Prunus persica HOM05D000916 ORTHO05D008653 4.4e-31 137.9 106 58.5
TWI32G0708 Tripterygium wilfordii HOM05D000916 ORTHO05D008653 4.4e-31 137.9 110 56.4
VMungo1383G0463 Vigna mungo HOM05D000916 ORTHO05D008653 4.4e-31 137.9 102 59.8
HanXRQChr11g0344701 Helianthus annuus HOM05D000916 ORTHO05D008653 7.5e-31 137.1 99 61.6
QL01p008693 Quercus lobata HOM05D000916 ORTHO05D008653 7.5e-31 137.1 104 57.7
PSO339G1413 Papaver somniferum HOM05D000916 ORTHO05D008653 9.9e-31 136.7 104 59.6
PSO384G1579 Papaver somniferum HOM05D000916 ORTHO05D008653 9.9e-31 136.7 104 59.6
Lalb_Chr01g0009441 Lupinus albus HOM05D000916 ORTHO05D008653 1.3e-30 136.3 103 58.3
arahy.Tifrunner.gnm1.ann1.9H9I7P Arachis hypogaea HOM05D000916 ORTHO05D008653 1.7e-30 136.0 106 58.5
Potri.003G219700 Populus trichocarpa HOM05D000916 ORTHO05D008653 1.7e-30 136.0 110 56.4
TAR633G1643 Trochodendron aralioides HOM05D000916 ORTHO05D008653 1.7e-30 136.0 106 60.4
HPP92_001606 Vanilla planifolia HOM05D000916 ORTHO05D008653 1.7e-30 136.0 104 57.7
ATR0737G073 Amborella trichopoda HOM05D000916 ORTHO05D008653 2.2e-30 135.6 105 58.1
Migut.G01135 Erythranthe guttata HOM05D000916 ORTHO05D008653 3.7e-30 134.8 101 60.4
Lsat_1_v5_gn_1_67460 Lactuca sativa HOM05D000916 ORTHO05D008653 4.9e-30 134.4 93 62.4
Manes.15G108100 Manihot esculenta HOM05D000916 ORTHO05D008653 4.9e-30 134.4 106 55.7
Pp3c19_19860 Physcomitrium patens HOM05D000916 ORTHO05D008653 8.3e-30 133.7 99 60.6
AUR62000001 Chenopodium quinoa HOM05D000916 ORTHO05D008653 1.1e-29 133.3 103 58.3
Sc06g0004240 Simmondsia chinensis HOM05D000916 ORTHO05D008653 1.1e-29 133.3 99 59.6
ClCG02G024330 Citrullus lanatus HOM05D000916 ORTHO05D008653 2.4e-29 132.1 102 54.9
SalBow2G3623 Salvia bowleyana HOM05D000916 ORTHO05D008653 2.4e-29 132.1 103 58.3
MSTRG.4278 Avicennia marina HOM05D000916 ORTHO05D008653 5.4e-29 131.0 104 58.7
Sed0003044 Sechium edule HOM05D000916 ORTHO05D008653 5.4e-29 131.0 110 51.8
Aqoxy2G00552 Aquilegia oxysepala HOM05D000916 ORTHO05D008653 7.1e-29 130.6 101 56.4
MELO3C014720.2 Cucumis melo HOM05D000916 ORTHO05D008653 9.2e-29 130.2 99 55.6
CsaV3_4G017470 Cucumis sativus L. HOM05D000916 ORTHO05D008653 9.2e-29 130.2 102 54.9
CDE10G1189 Ceratophyllum demersum HOM05D000916 ORTHO05D008653 2.1e-28 129.0 107 53.3
SEGI_04744 Sequoiadendron giganteum HOM05D000916 ORTHO05D008653 6.0e-28 127.5 99 56.6
CBR_g44394 Chara braunii HOM05D000916 ORTHO05D008653 1.2e-25 119.8 99 51.5
SMO304G0056 Selaginella moellendorffii HOM05D000916 ORTHO05D008653 1.8e-24 115.9 104 51.9
Sc06g0004190 Simmondsia chinensis HOM05D000916 ORTHO05D008653 4.4e-23 111.3 65 69.2
Peaxi162Scf00378g00518 Petunia axillaris HOM05D000916 ORTHO05D008653 7.6e-23 110.5 99 55.6
Sabra03G0163600 Salix brachista HOM05D000916 ORTHO05D008653 9.9e-23 110.2 64 68.8
unitig_0.g2425 Utricularia gibba HOM05D000916 ORTHO05D008653 2.9e-22 108.6 84 57.1
Gorai.013G247100 Gossypium raimondii HOM05D000916 ORTHO05D011795 1.4e-21 106.3 65 70.8
MCO05G282 Micromonas commoda HOM05D000916 ORTHO05D008653 1.9e-21 105.9 97 49.5
BcaNung03392 Brassica carinata HOM05D000916 ORTHO05D011795 7.1e-21 104.0 53 92.5
Gohir.D13G216666 Gossypium hirsutum HOM05D000916 ORTHO05D011795 3.5e-20 101.7 65 66.2
BcaC07g38084 Brassica carinata HOM05D000353 ORTHO05D000174 4.6e-20 101.3 69 71.0
C02p27510 Brassica napus HOM05D000916 ORTHO05D011795 6.0e-20 100.9 60 85.0
Dinv13456 Davidia involucrata HOM05D000916 ORTHO05D011795 6.0e-20 100.9 65 67.7
Cre12.g558550 Chlamydomonas reinhardtii HOM05D000916 ORTHO05D008653 8.7e-19 97.1 100 47.0
BolC3t19869H Brassica oleracea HOM05D000916 ORTHO05D011795 7.3e-18 94.0 115 51.3
A01p24560 Brassica napus HOM05D000916 ORTHO05D011795 1.1e-16 90.1 98 54.1
BcaC01g00131 Brassica carinata HOM05D000916 ORTHO05D011795 1.5e-15 86.3 98 53.1
PRCOL_00001611 Prasinoderma coloniale HOM05D000916 ORTHO05D008653 5.8e-15 84.3 98 41.8
Hma1.2p1_0843F.1_g227380 Hydrangea macrophylla HOM05D000916 ORTHO05D008653 2.7e-12 75.5 94 42.6
SGA_v2.0_scaffold17G08041 Striga asiatica HOM05D000916 ORTHO05D008653 2.7e-12 75.5 93 43.0
Haze_22951 Corylus avellana HOM05D000916 ORTHO05D008653 1.7e-11 72.8 87 43.7
Gorai.013G244100 Gossypium raimondii HOM05D000916 ORTHO05D008653 8.1e-09 63.9 35 77.1
Gorai.003G126100 Gossypium raimondii HOM05D000916 ORTHO05D011795 1.8e-08 62.8 57 47.4
Gohir.D03G119666 Gossypium hirsutum HOM05D000916 ORTHO05D011795 3.1e-08 62.0 57 47.4
AagrBONN_evm.TU.Sc2ySwM_344.3663 Anthoceros agrestis HOM05D000916 ORTHO05D007921 9.0e-08 60.5 93 31.2
Mapoly0012s0184 Marchantia polymorpha HOM05D000916 ORTHO05D026700 7.6e-07 57.4 91 31.9
Ciclev10021411m.g Citrus clementina HOM05D000916 ORTHO05D007921 2.2e-06 55.8 94 29.8
MELO3C025041.2 Cucumis melo HOM05D000916 ORTHO05D007921 3.8e-06 55.1 93 29.0
Pp3c8_3230 Physcomitrium patens HOM05D000916 ORTHO05D026700 3.8e-06 55.1 51 43.1
CBR_g23820 Chara braunii HOM05D000916 ORTHO05D007921 4.9e-06 54.7 75 34.7
CDE07G1353 Ceratophyllum demersum HOM05D000916 ORTHO05D007921 6.4e-06 54.3 93 30.1
CsaV3_6G002450 Cucumis sativus L. HOM05D000916 ORTHO05D007921 6.4e-06 54.3 93 28.0
SMO361G0114 Selaginella moellendorffii HOM05D000916 ORTHO05D007921 8.4e-06 53.9 94 30.9


User provided reference genes

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