Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21472 Brassica carinata HOM05D002825 ORTHO05D003824 1.2e-146 523.1 254 100.0
C09p31390 Brassica napus HOM05D002825 ORTHO05D003824 6.4e-140 500.7 272 91.5
BolC9t55997H Brassica oleracea HOM05D002825 ORTHO05D003824 4.1e-70 268.9 149 87.9
BcaC08g45154 Brassica carinata HOM05D002825 ORTHO05D003824 2.2e-68 263.1 128 97.7
C06p27760 Brassica napus HOM05D002825 ORTHO05D003824 2.2e-68 263.1 128 97.7
BolC6t37944H Brassica oleracea HOM05D002825 ORTHO05D003824 2.2e-68 263.1 128 97.7
BcaC08g45156 Brassica carinata HOM05D002825 ORTHO05D021407 6.3e-63 245.0 122 96.7
C06p27800 Brassica napus HOM05D000647 ORTHO05D011549 6.3e-63 245.0 122 96.7
BolC6t37947H Brassica oleracea HOM05D000647 ORTHO05D011549 6.3e-63 245.0 122 96.7
AL5G43830 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.7e-39 167.2 119 68.9
AL5G44790 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.0e-36 157.9 133 60.2
AL5G43650 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 8.6e-36 154.8 133 60.2
AL5G29610 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.9e-35 153.7 133 59.4
AT3G60980 Arabidopsis thaliana HOM05D002825 ORTHO05D003824 2.8e-34 149.8 133 56.4
Carub.0005s2842 Capsella rubella HOM05D002825 ORTHO05D011549 4.7e-34 149.1 121 61.2
AL5G43820 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 1.4e-33 147.5 123 59.3
Carub.0201s0002 Capsella rubella HOM05D002825 ORTHO05D011549 1.2e-32 144.4 121 58.7
AT3G60960 Arabidopsis thaliana HOM05D002825 ORTHO05D011549 5.8e-32 142.1 121 58.7
AT5G28340 Arabidopsis thaliana HOM05D002825 ORTHO05D011549 4.9e-31 139.0 123 56.1
AT5G28380 Arabidopsis thaliana HOM05D002825 ORTHO05D011549 4.9e-31 139.0 123 56.1
AL5G44780 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 6.4e-31 138.7 163 47.9
AL5G43690 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.4e-30 137.5 134 52.2
AL5G43680 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 4.1e-30 136.0 121 55.4
AL5G29530 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 6.0e-29 132.1 163 46.6
AL5G44690 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 3.0e-28 129.8 163 46.0
CARHR140100 Cardamine hirsuta HOM05D002825 ORTHO05D003824 5.8e-24 115.5 279 30.1
Carub.0201s0001 Capsella rubella HOM05D002825 ORTHO05D003824 7.1e-22 108.6 137 45.3
BcaC01g05126 Brassica carinata HOM05D002825 ORTHO05D003824 1.5e-19 100.9 120 44.2
C08p36570 Brassica napus HOM05D002825 ORTHO05D003824 5.6e-19 99.0 101 51.5
BolC8t51240H Brassica oleracea HOM05D002825 ORTHO05D003824 5.6e-19 99.0 101 51.5
Carub.0006s2575 Capsella rubella HOM05D002825 ORTHO05D011549 4.8e-18 95.9 121 44.6
Carub.0007s2495 Capsella rubella HOM05D002825 ORTHO05D003824 6.9e-17 92.0 124 41.9
AL4G44550 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 2.6e-16 90.1 99 45.5
C04p01000 Brassica napus HOM05D013471 ORTHO05D015349 2.2e-15 87.0 140 33.6
AL5G42780 Arabidopsis lyrata HOM05D002825 ORTHO05D023647 3.8e-15 86.3 128 37.5
AL5G42790 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 6.4e-15 85.5 141 37.6
Lsat_1_v5_gn_7_77221 Lactuca sativa HOM05D002825 ORTHO05D003824 8.4e-15 85.1 116 42.2
BcaC01g05137 Brassica carinata HOM05D002825 ORTHO05D003824 1.1e-14 84.7 135 39.3
BcaC02g12825 Brassica carinata HOM05D013471 ORTHO05D015349 1.1e-14 84.7 140 33.6
BolC3t15357H Brassica oleracea HOM05D002825 ORTHO05D003824 1.1e-14 84.7 135 39.3
Thhalv10006738m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 1.1e-14 84.7 261 27.2
Thhalv10023497m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 1.9e-14 84.0 141 36.2
ECA236G4782 Erigeron canadensis HOM05D002825 ORTHO05D003824 3.2e-14 83.2 117 41.9
Carub.0004s2842 Capsella rubella HOM05D002825 ORTHO05D011549 5.4e-14 82.4 121 38.0
PGR142G0082 Punica granatum HOM05D002825 ORTHO05D003824 5.4e-14 82.4 117 39.3
AL3G34220 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 7.1e-14 82.0 134 35.8
AL3G34230 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 7.1e-14 82.0 134 35.8
Medtr8g102650 Medicago truncatula HOM05D002825 ORTHO05D003824 7.1e-14 82.0 116 40.5
BcaC02g12596 Brassica carinata HOM05D013471 ORTHO05D015349 9.3e-14 81.6 118 36.4
BolC4t21715H Brassica oleracea HOM05D013471 ORTHO05D015349 9.3e-14 81.6 118 36.4
CARHR170890 Cardamine hirsuta HOM05D002825 ORTHO05D003824 9.3e-14 81.6 141 35.5
VMungo0540G0272 Vigna mungo HOM05D002825 ORTHO05D003824 2.1e-13 80.5 117 38.5
Carub.0005s2724 Capsella rubella HOM05D002825 ORTHO05D003824 2.7e-13 80.1 140 36.4
BcaB02g09550 Brassica carinata HOM05D013471 ORTHO05D015349 3.5e-13 79.7 122 36.1
Thhalv10023949m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 3.5e-13 79.7 115 39.1
Carub.0004s2841 Capsella rubella HOM05D002825 ORTHO05D003824 6.0e-13 79.0 182 29.7
C03p30080 Brassica napus HOM05D002825 ORTHO05D003824 7.9e-13 78.6 121 38.8
BcaC05g24908 Brassica carinata HOM05D002825 ORTHO05D003824 1.0e-12 78.2 261 27.2
A05p00830 Brassica napus HOM05D013471 ORTHO05D015349 1.3e-12 77.8 119 37.0
BraA05t19086Z Brassica rapa HOM05D013471 ORTHO05D015349 1.3e-12 77.8 119 37.0
Ca_17359_v3 Cicer arietinum L. HOM05D002825 ORTHO05D003824 1.3e-12 77.8 257 27.6
AL1G60310 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 2.3e-12 77.0 180 30.0
CARHR170900 Cardamine hirsuta HOM05D002825 ORTHO05D023647 3.0e-12 76.6 129 35.7
EL10Ac6g14013 Beta vulgaris HOM05D002825 ORTHO05D003824 5.1e-12 75.9 117 37.6
Potri.004G227800 Populus trichocarpa HOM05D002825 ORTHO05D003824 1.5e-11 74.3 124 33.9
CARHR170480 Cardamine hirsuta HOM05D002825 ORTHO05D023647 2.5e-11 73.6 86 40.7
Oeu000151.1 Olea europaea HOM05D002825 ORTHO05D003824 2.5e-11 73.6 118 36.4
Lalb_Chr18g0061131 Lupinus albus HOM05D002825 ORTHO05D003824 3.3e-11 73.2 117 35.0
C03p30090 Brassica napus HOM05D002825 ORTHO05D003824 5.6e-11 72.4 174 33.3
Carub.0005s2723 Capsella rubella HOM05D002825 ORTHO05D023647 5.6e-11 72.4 158 34.2
C07p48550 Brassica napus HOM05D002825 ORTHO05D003824 7.4e-11 72.0 177 32.8
GSVIVG01023159001 Vitis vinifera HOM05D002825 ORTHO05D003824 7.4e-11 72.0 257 24.9
Carub.0006s2574 Capsella rubella HOM05D002825 ORTHO05D003824 9.6e-11 71.6 106 44.3
A03p25220 Brassica napus HOM05D002825 ORTHO05D003824 1.6e-10 70.9 174 33.3
BraA03t11722Z Brassica rapa HOM05D002825 ORTHO05D003824 1.6e-10 70.9 174 33.3
BcaB01g03268 Brassica carinata HOM05D002825 ORTHO05D003824 3.6e-10 69.7 139 36.0
BcaC01g05136 Brassica carinata HOM05D002825 ORTHO05D003824 4.8e-10 69.3 174 33.3
BcaNung04658 Brassica carinata HOM05D002825 ORTHO05D003824 4.8e-10 69.3 178 32.0
BolC3t15358H Brassica oleracea HOM05D002825 ORTHO05D003824 4.8e-10 69.3 174 33.3
CAN.G855.39 Capsicum annuum HOM05D002825 ORTHO05D003824 4.8e-10 69.3 118 36.4
PSO384G0639 Papaver somniferum HOM05D002825 ORTHO05D003824 6.2e-10 68.9 116 37.1
BcaB02g09551 Brassica carinata HOM05D002825 ORTHO05D011549 1.1e-09 68.2 107 35.5
BcaC06g33535 Brassica carinata HOM05D002825 ORTHO05D003824 1.4e-09 67.8 177 31.6
BolC7t45363H Brassica oleracea HOM05D002825 ORTHO05D003824 1.4e-09 67.8 189 29.1
A05p00840 Brassica napus HOM05D002825 ORTHO05D011549 1.8e-09 67.4 176 31.2
BolC4t21754H Brassica oleracea HOM05D002825 ORTHO05D011549 1.8e-09 67.4 176 30.7
BraA05t19087Z Brassica rapa HOM05D002825 ORTHO05D011549 1.8e-09 67.4 176 31.2
Cpa.g.sc113.4 Carica papaya HOM05D002825 ORTHO05D003824 1.8e-09 67.4 230 27.4
C04p01010 Brassica napus HOM05D002825 ORTHO05D011549 2.4e-09 67.0 181 32.0
unitig_699.g19843 Utricularia gibba HOM05D002825 ORTHO05D003824 3.1e-09 66.6 87 39.1
BcaC02g12622 Brassica carinata HOM05D002825 ORTHO05D011549 4.0e-09 66.2 176 30.7
FvH4_5g27880 Fragaria vesca HOM05D002825 ORTHO05D003824 4.0e-09 66.2 257 24.1
BcaC02g12597 Brassica carinata HOM05D002825 ORTHO05D011549 5.3e-09 65.9 93 36.6
BcaC02g12609 Brassica carinata HOM05D002825 ORTHO05D011549 5.3e-09 65.9 93 36.6
BolC4t21716H Brassica oleracea HOM05D002825 ORTHO05D011549 5.3e-09 65.9 93 36.6
BolC4t21737H Brassica oleracea HOM05D002825 ORTHO05D011549 5.3e-09 65.9 93 36.6
Carub.0004s2572 Capsella rubella HOM05D002825 ORTHO05D003824 6.9e-09 65.5 122 29.5
BcaB02g07363 Brassica carinata HOM05D002825 ORTHO05D021407 9.0e-09 65.1 112 36.6
A05p25940 Brassica napus HOM05D002825 ORTHO05D011549 9.0e-09 65.1 93 35.5
C01p48580 Brassica napus HOM05D002825 ORTHO05D003824 1.5e-08 64.3 176 29.5
Potri.003G002950 Populus trichocarpa HOM05D002825 ORTHO05D003824 1.5e-08 64.3 257 26.8
AL4G44540 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 2.0e-08 63.9 139 30.9
CSS0030972 Camellia sinensis var. sinensis HOM05D002825 ORTHO05D003824 2.0e-08 63.9 230 27.8
RcHm_v2.0_Chr3g0472581 Rosa chinensis HOM05D002825 ORTHO05D003824 2.0e-08 63.9 87 36.8
Nn8g41098 Nelumbo nucifera HOM05D002825 ORTHO05D003824 2.6e-08 63.5 90 36.7
BcaB08g37339 Brassica carinata HOM05D002825 ORTHO05D003824 3.4e-08 63.2 246 25.6
Glyma.12G164700 Glycine max HOM05D002825 ORTHO05D003824 4.5e-08 62.8 259 24.7
AL7G38410 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 9.9e-08 61.6 125 32.0
BcaC07g41827 Brassica carinata HOM05D002825 ORTHO05D003824 1.7e-07 60.8 246 25.2
BcaNung04659 Brassica carinata HOM05D002825 ORTHO05D003824 1.7e-07 60.8 74 40.5
BolC1t04813H Brassica oleracea HOM05D002825 ORTHO05D003824 2.2e-07 60.5 126 32.5
BcaC02g12824 Brassica carinata HOM05D002825 ORTHO05D011549 2.9e-07 60.1 176 28.4
Sc06g0000730 Simmondsia chinensis HOM05D002825 ORTHO05D003824 2.9e-07 60.1 92 37.0
AUR62000337 Chenopodium quinoa HOM05D002825 ORTHO05D003824 6.4e-07 58.9 87 34.5
DCAR_022278 Daucus carota HOM05D002825 ORTHO05D003824 8.4e-07 58.5 88 37.5
MD15G1441500 Malus domestica HOM05D002825 ORTHO05D003824 8.4e-07 58.5 88 34.1
Medtr7g069270 Medicago truncatula HOM05D002825 ORTHO05D003824 8.4e-07 58.5 73 39.7
Nitab4.5_0001057g0030 Nicotiana tabacum HOM05D002825 ORTHO05D003824 8.4e-07 58.5 137 31.4
Nitab4.5_0001129g0060 Nicotiana tabacum HOM05D002825 ORTHO05D003824 8.4e-07 58.5 112 36.6
Phvul.006G221100 Phaseolus vulgaris HOM05D002825 ORTHO05D003824 8.4e-07 58.5 88 35.2
CiPaw.05G002300 Carya illinoinensis HOM05D002825 ORTHO05D003824 1.1e-06 58.2 88 35.2
MD08G1246600 Malus domestica HOM05D002825 ORTHO05D003824 1.1e-06 58.2 88 34.1
DCAR_003286 Daucus carota HOM05D002825 ORTHO05D003824 1.4e-06 57.8 83 36.1
Eucgr.I02789 Eucalyptus grandis HOM05D002825 ORTHO05D003824 1.4e-06 57.8 83 37.3
FAN04G1220 Fragaria x ananassa HOM05D002825 ORTHO05D003824 1.9e-06 57.4 88 34.1
FAN18G3010 Fragaria x ananassa HOM05D002825 ORTHO05D003824 1.9e-06 57.4 88 34.1
Rhsim05G0174700 Rhododendron simsii HOM05D002825 ORTHO05D003824 1.9e-06 57.4 138 29.7
RcHm_v2.0_Chr7g0220071 Rosa chinensis HOM05D002825 ORTHO05D003824 1.9e-06 57.4 88 34.1
Lj9A281T41 Lonicera japonica HOM05D002825 ORTHO05D003824 4.2e-06 56.2 88 36.4
C01p48210 Brassica napus HOM05D002825 ORTHO05D003824 5.5e-06 55.8 75 41.3
Lsat_1_v5_gn_5_91740 Lactuca sativa HOM05D002825 ORTHO05D003824 5.5e-06 55.8 63 42.9
Actinidia01627 Actinidia chinensis HOM05D002825 ORTHO05D003824 7.1e-06 55.5 138 29.7
AL4G45290 Arabidopsis lyrata HOM05D013471 ORTHO05D015349 9.3e-06 55.1 60 43.3


User provided reference genes

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