Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21464 Brassica carinata HOM05D000048 ORTHO05D023370 7.2e-43 176.8 86 100.0
C09p31500 Brassica napus HOM05D000048 ORTHO05D023370 7.2e-43 176.8 86 100.0
A02p04410 Brassica napus HOM05D000048 ORTHO05D000436 4.7e-18 94.4 52 88.5
BraA02t05405Z Brassica rapa HOM05D000048 ORTHO05D000436 4.7e-18 94.4 52 88.5
C02p09260 Brassica napus HOM05D000048 ORTHO05D000436 2.3e-17 92.0 52 86.5
BolC2t06834H Brassica oleracea HOM05D000048 ORTHO05D000436 2.3e-17 92.0 52 86.5
AL6G28790 Arabidopsis lyrata HOM05D000048 ORTHO05D000436 8.8e-17 90.1 52 84.6
AT5G17700 Arabidopsis thaliana HOM05D000048 ORTHO05D000436 8.8e-17 90.1 52 84.6
Sp6g26520 Schrenkiella parvula HOM05D000048 ORTHO05D000436 8.8e-17 90.1 52 82.7
BcaB08g36750 Brassica carinata HOM05D000048 ORTHO05D000436 1.5e-16 89.4 52 82.7
BcaC04g18767 Brassica carinata HOM05D000048 ORTHO05D000436 1.5e-16 89.4 52 82.7
A10p21720 Brassica napus HOM05D000048 ORTHO05D000436 1.5e-16 89.4 52 82.7
C09p59460 Brassica napus HOM05D000048 ORTHO05D000436 1.5e-16 89.4 52 82.7
BolC9t58785H Brassica oleracea HOM05D000048 ORTHO05D000436 1.5e-16 89.4 52 82.7
BraA10t44233Z Brassica rapa HOM05D000048 ORTHO05D000436 1.5e-16 89.4 52 82.7
Thhalv10013347m.g Eutrema salsugineum HOM05D000048 ORTHO05D000436 1.5e-16 89.4 52 82.7
Carub.0006s1594 Capsella rubella HOM05D000048 ORTHO05D000436 4.4e-16 87.8 52 78.8
CARHR195480 Cardamine hirsuta HOM05D000048 ORTHO05D000436 9.8e-16 86.7 52 80.8
AL3G13400 Arabidopsis lyrata HOM05D000048 ORTHO05D000436 1.4e-14 82.8 52 75.0
AT3G03620 Arabidopsis thaliana HOM05D000048 ORTHO05D000436 1.4e-14 82.8 52 75.0
Carub.0003s0278 Capsella rubella HOM05D000048 ORTHO05D000436 3.1e-14 81.6 52 73.1
BcaC05g29867 Brassica carinata HOM05D000048 ORTHO05D000436 4.1e-14 81.3 52 73.1
BcaC05g30262 Brassica carinata HOM05D000048 ORTHO05D000436 4.1e-14 81.3 52 73.1
A05p43690 Brassica napus HOM05D000048 ORTHO05D000436 4.1e-14 81.3 52 73.1
C05p63270 Brassica napus HOM05D000048 ORTHO05D000436 4.1e-14 81.3 52 73.1
BolC5t34990H Brassica oleracea HOM05D000048 ORTHO05D000436 4.1e-14 81.3 52 73.1
BraA05t23108Z Brassica rapa HOM05D000048 ORTHO05D000436 4.1e-14 81.3 52 73.1
Thhalv10022143m.g Eutrema salsugineum HOM05D000048 ORTHO05D000436 4.1e-14 81.3 52 71.2
A01p41490 Brassica napus HOM05D000048 ORTHO05D000436 5.4e-14 80.9 49 77.6
BNapus_Darmor_BZH_scaffold_78p00220 Brassica napus HOM05D000048 ORTHO05D000436 5.4e-14 80.9 49 77.6
BolC1t05822H Brassica oleracea HOM05D000048 ORTHO05D000436 5.4e-14 80.9 49 77.6
BraA01t04572Z Brassica rapa HOM05D000048 ORTHO05D000436 5.4e-14 80.9 49 77.6
Aa31LG11G11890 Aethionema arabicum HOM05D000048 ORTHO05D000436 7.0e-14 80.5 52 73.1
CARHR077670 Cardamine hirsuta HOM05D000048 ORTHO05D000436 9.1e-14 80.1 52 71.2
BcaC09g47721 Brassica carinata HOM05D000048 ORTHO05D000436 1.6e-13 79.3 49 75.5
BNapus_Darmor_BZH_scaffold_162p00240 Brassica napus HOM05D000048 ORTHO05D000436 1.6e-13 79.3 49 75.5
Aa31LG11G11900 Aethionema arabicum HOM05D000048 ORTHO05D023370 7.7e-13 77.0 54 68.5
Aa31LG5G14130 Aethionema arabicum HOM05D000048 ORTHO05D000436 7.7e-13 77.0 52 69.2
THA.LOC104827248 Tarenaya hassleriana HOM05D000048 ORTHO05D000436 7.7e-13 77.0 52 67.3
Cpa.g.sc73.24 Carica papaya HOM05D000048 ORTHO05D000436 1.8e-09 65.9 48 66.7
CAN.G128.116 Capsicum annuum HOM05D000048 ORTHO05D000436 6.8e-09 63.9 63 49.2
THA.LOC104827247 Tarenaya hassleriana HOM05D000048 ORTHO05D000436 6.8e-09 63.9 48 58.3
QL07p016064 Quercus lobata HOM05D000048 ORTHO05D000436 3.4e-08 61.6 63 50.8
Duzib177G0278 Durio zibethinus HOM05D000048 ORTHO05D000436 5.7e-08 60.8 63 49.2
Gohir.A11G225500 Gossypium hirsutum HOM05D000048 ORTHO05D000436 5.7e-08 60.8 63 49.2
Gorai.007G249400 Gossypium raimondii HOM05D000048 ORTHO05D000436 5.7e-08 60.8 63 49.2
Gohir.D11G236300 Gossypium hirsutum HOM05D000048 ORTHO05D000436 7.5e-08 60.5 63 49.2
Thecc.05G232800 Theobroma cacao HOM05D000048 ORTHO05D000436 7.5e-08 60.5 63 47.6
Cc00_g07510 Coffea canephora HOM05D000048 ORTHO05D000436 9.8e-08 60.1 63 44.4
ECA248G1457 Erigeron canadensis HOM05D000048 ORTHO05D000436 9.8e-08 60.1 63 44.4
Cfa011158 Carpinus fangiana HOM05D000048 ORTHO05D000436 1.7e-07 59.3 63 49.2
COL.COLO4_38567 Corchorus olitorius HOM05D000048 ORTHO05D000436 1.7e-07 59.3 63 44.4
Nitab4.5_0000062g0560 Nicotiana tabacum HOM05D000048 ORTHO05D000436 1.7e-07 59.3 63 46.0
Nitab4.5_0010533g0010 Nicotiana tabacum HOM05D000048 ORTHO05D000436 1.7e-07 59.3 63 46.0
PGSC0003DMG400028117 Solanum tuberosum HOM05D000048 ORTHO05D000436 1.7e-07 59.3 63 46.0
SGA_v2.0_scaffold69G23207 Striga asiatica HOM05D000048 ORTHO05D000436 2.2e-07 58.9 63 42.9
Thecc.05G237300 Theobroma cacao HOM05D000048 ORTHO05D000436 2.2e-07 58.9 63 46.0
COL.COLO4_38564 Corchorus olitorius HOM05D000048 ORTHO05D000436 2.8e-07 58.5 63 42.9
Duzib128G0506 Durio zibethinus HOM05D000048 ORTHO05D000436 2.8e-07 58.5 63 46.0
MSTRG.19753 Avicennia marina HOM05D000048 ORTHO05D000436 3.7e-07 58.2 63 42.9
CANSAT78G2250 Cannabis sativa HOM05D000048 ORTHO05D000436 3.7e-07 58.2 63 47.6
Gorai.007G251500 Gossypium raimondii HOM05D000048 ORTHO05D000436 3.7e-07 58.2 63 46.0
HanXRQChr16g0525361 Helianthus annuus HOM05D000048 ORTHO05D000436 3.7e-07 58.2 62 45.2
Lsat_1_v5_gn_1_83080 Lactuca sativa HOM05D000048 ORTHO05D000436 3.7e-07 58.2 63 44.4
GSVIVG01029934001 Vitis vinifera HOM05D000048 ORTHO05D000436 3.7e-07 58.2 62 48.4
Actinidia37841 Actinidia chinensis HOM05D000048 ORTHO05D000436 4.9e-07 57.8 63 44.4
Cpa.g.sc73.52 Carica papaya HOM05D000048 ORTHO05D000436 4.9e-07 57.8 63 47.6
Cfa011157 Carpinus fangiana HOM05D000048 ORTHO05D000436 4.9e-07 57.8 63 47.6
Haze_02696 Corylus avellana HOM05D000048 ORTHO05D000436 4.9e-07 57.8 63 47.6
HanXRQChr16g0521431 Helianthus annuus HOM05D000048 ORTHO05D000436 4.9e-07 57.8 63 44.4
HanXRQChr16g0525441 Helianthus annuus HOM05D000048 ORTHO05D000436 4.9e-07 57.8 62 48.4
Lj1A1077T37 Lonicera japonica HOM05D000048 ORTHO05D000436 6.3e-07 57.4 63 44.4
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 6.3e-07 57.4 52 50.0
Thecc.05G237400 Theobroma cacao HOM05D000048 ORTHO05D000436 6.3e-07 57.4 63 46.0
Dinv37040 Davidia involucrata HOM05D000048 ORTHO05D000436 8.3e-07 57.0 63 44.4
ECA234G1835 Erigeron canadensis HOM05D000048 ORTHO05D000436 8.3e-07 57.0 63 44.4
Hma1.2p1_0826F.1_g224910 Hydrangea macrophylla HOM05D000048 ORTHO05D000436 8.3e-07 57.0 63 47.6
Potri.015G139400 Populus trichocarpa HOM05D000048 ORTHO05D000436 8.3e-07 57.0 63 46.0
Potri.015G139500 Populus trichocarpa HOM05D000048 ORTHO05D000436 8.3e-07 57.0 63 46.0
vmacro07623 Vaccinium macrocarpon HOM05D000048 ORTHO05D000436 8.3e-07 57.0 63 47.6
Ciclev10031358m.g Citrus clementina HOM05D000048 ORTHO05D000436 1.1e-06 56.6 62 45.2
Ciclev10031503m.g Citrus clementina HOM05D000048 ORTHO05D000436 1.1e-06 56.6 62 45.2
Ciclev10032448m.g Citrus clementina HOM05D000048 ORTHO05D000436 1.1e-06 56.6 62 45.2
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 1.1e-06 56.6 63 42.9
Peaxi162Scf00153g00073 Petunia axillaris HOM05D000048 ORTHO05D000436 1.1e-06 56.6 63 42.9
Solyc10g081260.2 Solanum lycopersicum HOM05D000048 ORTHO05D000436 1.1e-06 56.6 63 44.4
Sopen10g031760 Solanum pennellii HOM05D000048 ORTHO05D000436 1.1e-06 56.6 63 44.4
vmacro07624 Vaccinium macrocarpon HOM05D000048 ORTHO05D000436 1.1e-06 56.6 63 46.0
CSS0013927 Camellia sinensis var. sinensis HOM05D000048 ORTHO05D000436 1.4e-06 56.2 63 44.4
COL.COLO4_38565 Corchorus olitorius HOM05D000048 ORTHO05D000436 1.4e-06 56.2 63 41.3
Gohir.A11G224202 Gossypium hirsutum HOM05D000048 ORTHO05D000436 1.4e-06 56.2 63 44.4
Oeu053704.1 Olea europaea HOM05D000048 ORTHO05D000436 1.4e-06 56.2 63 44.4
Sc12g0006750 Simmondsia chinensis HOM05D000048 ORTHO05D000436 1.4e-06 56.2 63 46.0
COL.COLO4_33463 Corchorus olitorius HOM05D000048 ORTHO05D000436 1.8e-06 55.8 63 44.4
DCAR_020636 Daucus carota HOM05D000048 ORTHO05D000436 1.8e-06 55.8 63 42.9
Gohir.1Z001700 Gossypium hirsutum HOM05D000048 ORTHO05D000436 1.8e-06 55.8 63 44.4
Oeu020256.1 Olea europaea HOM05D000048 ORTHO05D000436 1.8e-06 55.8 63 46.0
Hma1.2p1_0165F.1_g073370 Hydrangea macrophylla HOM05D000048 ORTHO05D000436 2.4e-06 55.5 53 49.1
Lsat_1_v5_gn_1_83120 Lactuca sativa HOM05D000048 ORTHO05D000436 2.4e-06 55.5 63 42.9
Lsat_1_v5_gn_4_38920 Lactuca sativa HOM05D000048 ORTHO05D000436 2.4e-06 55.5 63 42.9
Lsat_1_v5_gn_7_11581 Lactuca sativa HOM05D000048 ORTHO05D000436 2.4e-06 55.5 63 41.3
Nn6g34656 Nelumbo nucifera HOM05D000048 ORTHO05D000436 2.4e-06 55.5 53 49.1
SalBow6G1721 Salvia bowleyana HOM05D000048 ORTHO05D000436 2.4e-06 55.5 63 41.3
Atru.chr2.1583 Acer truncatum HOM05D000048 ORTHO05D000436 3.1e-06 55.1 63 41.3
MSTRG.19752 Avicennia marina HOM05D000048 ORTHO05D000436 3.1e-06 55.1 63 41.3
MSTRG.19755 Avicennia marina HOM05D000048 ORTHO05D000436 3.1e-06 55.1 63 42.9
MSTRG.6266 Avicennia marina HOM05D000048 ORTHO05D000436 3.1e-06 55.1 63 44.4
Haze_02694 Corylus avellana HOM05D000048 ORTHO05D000436 3.1e-06 55.1 53 49.1
Duzib177G0009 Durio zibethinus HOM05D000048 ORTHO05D000436 3.1e-06 55.1 63 42.9
ECA236G2375 Erigeron canadensis HOM05D000048 ORTHO05D000436 3.1e-06 55.1 63 41.3
HanXRQChr13g0396761 Helianthus annuus HOM05D000048 ORTHO05D000436 3.1e-06 55.1 63 41.3
Manes.09G135200 Manihot esculenta HOM05D000048 ORTHO05D000436 3.1e-06 55.1 62 41.9
QL07p016033 Quercus lobata HOM05D000048 ORTHO05D000436 3.1e-06 55.1 63 44.4
Sabra15G0150300 Salix brachista HOM05D000048 ORTHO05D000436 3.1e-06 55.1 63 44.4
COL.COLO4_33464 Corchorus olitorius HOM05D000048 ORTHO05D000436 4.1e-06 54.7 63 42.9
DCAR_020637 Daucus carota HOM05D000048 ORTHO05D000436 4.1e-06 54.7 63 42.9
Migut.J01588 Erythranthe guttata HOM05D000048 ORTHO05D000436 4.1e-06 54.7 63 41.3
Atru.chr2.1580 Acer truncatum HOM05D000048 ORTHO05D000436 5.4e-06 54.3 63 41.3
Migut.J01585 Erythranthe guttata HOM05D000048 ORTHO05D000436 5.4e-06 54.3 63 41.3
Migut.J01587 Erythranthe guttata HOM05D000048 ORTHO05D000436 5.4e-06 54.3 63 41.3
Oeu020257.1 Olea europaea HOM05D000048 ORTHO05D000436 5.4e-06 54.3 63 44.4
Sabra13G0060300 Salix brachista HOM05D000048 ORTHO05D000436 5.4e-06 54.3 63 42.9
vmacro07627 Vaccinium macrocarpon HOM05D000048 ORTHO05D000436 5.4e-06 54.3 63 44.4
HanXRQChr06g0168551 Helianthus annuus HOM05D000048 ORTHO05D000436 7.0e-06 53.9 63 39.7
Nitab4.5_0003318g0110 Nicotiana tabacum HOM05D000048 ORTHO05D005809 7.0e-06 53.9 40 62.5
Oeu009506.1 Olea europaea HOM05D000048 ORTHO05D000436 7.0e-06 53.9 63 39.7
Rhsim03G0044900 Rhododendron simsii HOM05D000048 ORTHO05D000436 7.0e-06 53.9 41 61.0
vmacro07622 Vaccinium macrocarpon HOM05D000048 ORTHO05D000436 7.0e-06 53.9 53 49.1
MSTRG.10762 Avicennia marina HOM05D000048 ORTHO05D000436 9.2e-06 53.5 63 41.3
COL.COLO4_38569 Corchorus olitorius HOM05D000048 ORTHO05D000436 9.2e-06 53.5 63 44.4
Gorai.007G251700 Gossypium raimondii HOM05D000048 ORTHO05D000436 9.2e-06 53.5 63 41.3
SalBow6G1243 Salvia bowleyana HOM05D000048 ORTHO05D000436 9.2e-06 53.5 63 41.3
SGA_v2.0_scaffold106G30579 Striga asiatica HOM05D000048 ORTHO05D000436 9.2e-06 53.5 63 39.7


User provided reference genes

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