Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 7.2e-113 410.6 210 100.0
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 7.2e-113 410.6 210 100.0
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 2.1e-112 409.1 210 99.5
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 6.7e-111 404.1 210 98.6
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 6.7e-111 404.1 210 98.6
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 1.5e-110 402.9 210 98.1
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 5.3e-108 394.4 210 96.2
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 2.7e-107 392.1 210 95.2
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 1.0e-106 390.2 210 94.8
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 2.2e-106 389.0 210 93.8
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 6.8e-103 377.5 208 92.3
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 2.0e-102 375.9 210 91.9
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 9.8e-102 373.6 207 92.3
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 8.3e-101 370.5 208 89.9
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 8.3e-101 370.5 208 90.9
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.1e-100 370.2 208 90.4
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.4e-100 369.8 208 90.4
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.4e-100 369.8 208 90.4
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 1.8e-100 369.4 207 90.8
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 89.4
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 2.4e-100 369.0 208 90.4
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 2.4e-100 369.0 208 90.9
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 4.1e-100 368.2 208 89.4
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 5.4e-100 367.9 208 89.9
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 9.1e-100 367.1 208 88.9
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 9.1e-100 367.1 208 88.9
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 9.1e-100 367.1 208 88.9
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 9.1e-100 367.1 208 88.5
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 9.1e-100 367.1 211 89.1
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 1.2e-99 366.7 208 88.9
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 1.2e-99 366.7 208 89.9
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.2e-99 366.7 208 89.4
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 1.2e-99 366.7 208 88.9
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 1.6e-99 366.3 210 88.1
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.6e-99 366.3 208 88.5
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 2.0e-99 365.9 207 89.4
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 88.5
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 89.4
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 88.9
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 2.7e-99 365.5 207 88.4
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 2.7e-99 365.5 207 88.4
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 3.5e-99 365.2 208 88.9
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 3.5e-99 365.2 208 88.0
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 4.5e-99 364.8 207 89.4
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 88.5
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 88.9
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 88.9
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.3e-98 363.2 208 88.0
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 1.7e-98 362.8 208 88.9
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 1.7e-98 362.8 208 88.0
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 2.3e-98 362.5 208 88.0
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 2.9e-98 362.1 201 90.0
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 2.9e-98 362.1 208 88.0
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 3.8e-98 361.7 207 88.9
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 5.0e-98 361.3 208 87.0
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 5.0e-98 361.3 208 87.5
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 5.0e-98 361.3 208 87.0
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 5.0e-98 361.3 208 87.0
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 6.6e-98 360.9 208 88.9
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 8.6e-98 360.5 208 88.0
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 1.1e-97 360.1 208 87.5
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.1e-97 360.1 208 86.5
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 1.1e-97 360.1 208 87.5
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.1e-97 360.1 208 87.5
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 88.0
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 3.3e-97 358.6 207 86.5
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 4.2e-97 358.2 213 86.4
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 5.5e-97 357.8 208 87.0
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 9.5e-97 357.1 208 86.1
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 9.5e-97 357.1 208 87.0
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 9.5e-97 357.1 207 87.0
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.2e-96 356.7 207 87.0
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 1.6e-96 356.3 208 87.0
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.6e-96 356.3 208 87.0
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 2.8e-96 355.5 210 86.7
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 2.8e-96 355.5 208 86.5
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 2.8e-96 355.5 208 87.0
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 4.7e-96 354.8 208 85.6
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 6.1e-96 354.4 208 86.5
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 8.0e-96 354.0 208 86.1
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 1.0e-95 353.6 208 86.5
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 1.0e-95 353.6 208 86.5
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.4e-95 353.2 208 86.1
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 4.0e-95 351.7 208 86.5
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 5.2e-95 351.3 218 82.1
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 6.8e-95 350.9 210 85.2
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 1.2e-94 350.1 206 86.4
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 2.6e-94 349.0 208 85.1
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 3.4e-94 348.6 208 87.0
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 4.4e-94 348.2 208 85.6
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 5.7e-94 347.8 206 85.9
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 5.7e-94 347.8 208 86.1
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 6.3e-93 344.4 208 84.1
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.8e-92 342.8 208 82.7
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 2.4e-92 342.4 208 82.2
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 5.4e-92 341.3 208 84.6
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 5.4e-92 341.3 208 84.6
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 9.2e-92 340.5 208 85.1
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.0e-91 339.3 208 84.1
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 2.7e-91 339.0 197 87.8
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 1.7e-90 336.3 208 83.2
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 2.3e-90 335.9 178 94.4
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.9e-89 332.8 208 82.2
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 9.5e-89 330.5 178 90.4
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 6.1e-88 327.8 177 90.4
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 1.8e-87 326.2 178 89.3
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.6e-86 322.4 208 80.8
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 3.4e-86 322.0 178 88.8
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 4.1e-84 315.1 178 84.8
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 5.4e-84 314.7 207 79.7
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 2.7e-83 312.4 201 74.1
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 3.0e-82 308.9 191 83.2
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 3.6e-80 302.0 209 77.0
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 4.0e-79 298.5 208 77.9
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 1.9e-76 289.7 167 83.8
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 2.1e-75 286.2 155 90.3
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 2.7e-75 285.8 206 73.8
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 8.6e-74 280.8 154 89.6
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 8.9e-71 270.8 208 70.7
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 2.7e-67 259.2 233 62.7
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 7.8e-67 257.7 195 63.6
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 2.1e-64 249.6 207 65.7
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 3.6e-64 248.8 204 60.3
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 1.1e-63 247.3 199 59.8
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 2.4e-63 246.1 198 60.1
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 3.1e-63 245.7 161 78.9
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 5.6e-57 224.9 208 52.9
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 7.3e-57 224.6 119 90.8
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 4.0e-55 218.8 148 77.0
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 3.2e-52 209.1 134 84.3
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 8.7e-50 201.1 150 70.0
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 7.3e-49 198.0 208 51.4
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 4.8e-48 195.3 202 52.5
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 1.3e-45 187.2 204 46.1
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 2.9e-45 186.0 204 45.6
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 3.5e-43 179.1 209 52.6
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 2.5e-41 172.9 160 62.5
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 6.2e-40 168.3 98 82.7
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 5.3e-39 165.2 232 42.7
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 3.2e-36 156.0 208 48.1
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 1.1e-31 141.0 95 76.8
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 4.1e-31 139.0 99 72.7
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 6.9e-31 138.3 207 45.9
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 2.2e-29 133.3 92 77.2
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 1.2e-27 127.5 187 37.4
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 7.9e-27 124.8 135 54.1
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 9.7e-25 117.9 59 88.1
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 3.7e-24 115.9 82 74.4
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.8e-24 115.5 75 80.0
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 3.1e-23 112.8 60 91.7
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.1e-23 112.5 84 70.2
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 6.9e-23 111.7 73 78.1
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 8.5e-13 78.2 61 60.7
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 1.6e-11 73.9 62 69.4
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 3.7e-08 62.8 39 69.2
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 3.7e-08 62.8 69 58.0
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 8.2e-08 61.6 38 73.7


User provided reference genes

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