Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 2.9e-58 228.4 119 100.0
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 2.9e-58 228.4 119 100.0
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 3.8e-58 228.0 118 100.0
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 8.7e-55 216.9 119 94.1
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 2.5e-54 215.3 120 95.8
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 2.5e-54 215.3 120 95.8
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 2.4e-44 182.2 117 82.9
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 2.6e-43 178.7 119 80.7
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 9.9e-43 176.8 120 79.2
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.7e-42 176.0 120 78.3
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 2.2e-42 175.6 116 77.6
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 2.2e-42 175.6 116 77.6
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 3.8e-42 174.9 116 77.6
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 3.8e-42 174.9 116 77.6
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 5.4e-41 171.0 117 77.8
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 3.5e-40 168.3 114 79.8
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 3.8e-34 148.3 125 68.0
BcaB01g01833 Brassica carinata HOM05D009543 ORTHO05D004666 5.0e-18 94.7 119 52.9
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.1e-17 93.6 117 47.9
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.9e-17 92.8 119 48.7
Carub.0007s1945 Capsella rubella HOM05D009543 ORTHO05D004666 4.2e-17 91.7 121 47.1
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 5.5e-17 91.3 118 46.6
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.6e-16 89.7 114 46.5
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 2.1e-16 89.4 118 45.8
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 3.6e-16 88.6 118 45.8
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 3.6e-16 88.6 118 45.8
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 3.6e-16 88.6 118 45.8
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 2.0e-14 82.8 118 44.1
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 3.3e-14 82.0 122 45.9
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.1e-12 77.0 78 50.0
BcaB05g23718 Brassica carinata HOM05D008153 ORTHO05D004666 3.4e-11 72.0 47 78.7
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 4.2e-09 65.1 119 34.5
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 5.5e-09 64.7 112 38.4
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 7.2e-09 64.3 114 37.7
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 1.6e-08 63.2 118 38.1
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 2.1e-08 62.8 104 38.5
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.7e-08 62.4 69 50.7
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 2.7e-08 62.4 121 35.5
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 4.7e-08 61.6 123 38.2
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 6.1e-08 61.2 75 41.3
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 7.9e-08 60.8 75 45.3
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 7.9e-08 60.8 77 40.3
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.4e-07 60.1 69 50.7
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 1.4e-07 60.1 111 37.8
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 1.8e-07 59.7 101 35.6
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 2.3e-07 59.3 124 37.1
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 2.3e-07 59.3 118 33.1
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 2.3e-07 59.3 118 33.9
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 2.3e-07 59.3 69 46.4
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 3.9e-07 58.5 78 42.3
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 3.9e-07 58.5 77 49.4
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 5.1e-07 58.2 69 44.9
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 6.7e-07 57.8 77 41.6
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 6.7e-07 57.8 76 43.4
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 8.8e-07 57.4 69 49.3
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 8.8e-07 57.4 118 36.4
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 1.1e-06 57.0 103 38.8
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.1e-06 57.0 77 44.2
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.0e-06 56.2 78 41.0
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 2.0e-06 56.2 111 38.7
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.6e-06 55.8 118 36.4
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 2.6e-06 55.8 68 47.1
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 3.3e-06 55.5 78 43.6
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 3.3e-06 55.5 77 40.3
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 3.3e-06 55.5 77 44.2
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 4.4e-06 55.1 74 44.6
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 4.4e-06 55.1 74 44.6
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 4.4e-06 55.1 74 44.6
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 4.4e-06 55.1 77 45.5
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 4.4e-06 55.1 78 43.6
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 4.4e-06 55.1 118 31.4
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 5.7e-06 54.7 73 43.8
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.7e-06 54.7 71 45.1
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 5.7e-06 54.7 71 45.1
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 5.7e-06 54.7 113 32.7
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 5.7e-06 54.7 77 46.8
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 7.4e-06 54.3 68 39.7
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 7.4e-06 54.3 86 38.4
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 7.4e-06 54.3 122 34.4
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 7.4e-06 54.3 122 34.4
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 7.4e-06 54.3 77 41.6
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 7.4e-06 54.3 77 41.6
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 9.7e-06 53.9 86 38.4
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 9.7e-06 53.9 127 33.9


User provided reference genes

Program Settings