Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21286 Brassica carinata HOM05D003373 ORTHO05D013173 9.5e-76 287.0 166 100.0
C09p33540 Brassica napus HOM05D003373 ORTHO05D013173 2.9e-72 275.4 166 97.6
BolC9t56189H Brassica oleracea HOM05D003373 ORTHO05D013173 2.9e-72 275.4 166 97.6
A09p26380 Brassica napus HOM05D003373 ORTHO05D013173 6.6e-69 264.2 166 87.3
BraA09t38212Z Brassica rapa HOM05D003373 ORTHO05D013173 6.6e-69 264.2 166 87.3
BcaB01g01800 Brassica carinata HOM05D003373 ORTHO05D013173 6.2e-59 231.1 166 80.7
C03p36240 Brassica napus HOM05D003373 ORTHO05D013173 2.5e-44 182.6 168 69.6
BolC3t15933H Brassica oleracea HOM05D003373 ORTHO05D013173 2.5e-44 182.6 168 69.6
A03p29950 Brassica napus HOM05D003373 ORTHO05D013173 3.6e-43 178.7 170 68.2
BraA03t12184Z Brassica rapa HOM05D003373 ORTHO05D013173 3.0e-37 159.1 170 62.9
AL3G40300 Arabidopsis lyrata HOM05D003373 ORTHO05D013173 2.6e-33 146.0 163 61.3
AT3G24690 Arabidopsis thaliana HOM05D003373 ORTHO05D013173 4.0e-26 122.1 162 53.7
Thhalv10029189m.g Eutrema salsugineum HOM05D003373 ORTHO05D013173 1.7e-24 116.7 167 48.5
Thhalv10007745m.g Eutrema salsugineum HOM05D003373 ORTHO05D004419 1.5e-17 93.6 81 66.7
Carub.0001s2388 Capsella rubella HOM05D003373 ORTHO05D004419 2.6e-17 92.8 80 68.8
AL1G38400 Arabidopsis lyrata HOM05D003373 ORTHO05D004419 3.4e-17 92.4 112 52.7
AT1G27090 Arabidopsis thaliana HOM05D003373 ORTHO05D004419 7.7e-17 91.3 112 51.8
BcaB03g11980 Brassica carinata HOM05D003373 ORTHO05D004419 2.9e-16 89.4 74 70.3
A08p27730 Brassica napus HOM05D003373 ORTHO05D004419 3.8e-16 89.0 74 70.3
Sp1g21690 Schrenkiella parvula HOM05D003373 ORTHO05D004419 3.8e-16 89.0 111 51.4
MELO3C012054.2 Cucumis melo HOM05D003373 ORTHO05D004419 5.0e-16 88.6 80 63.8
Gohir.D04G137300 Gossypium hirsutum HOM05D003373 ORTHO05D004419 5.0e-16 88.6 86 59.3
Ciclev10031519m.g Citrus clementina HOM05D003373 ORTHO05D004419 6.5e-16 88.2 79 63.3
Duzib248G1211 Durio zibethinus HOM05D003373 ORTHO05D004419 6.5e-16 88.2 78 65.4
BcaC05g26344 Brassica carinata HOM05D003373 ORTHO05D004419 8.5e-16 87.8 74 68.9
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 8.5e-16 87.8 74 68.9
BolC5t31088H Brassica oleracea HOM05D003373 ORTHO05D004419 8.5e-16 87.8 74 68.9
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 1.1e-15 87.4 74 68.9
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 1.1e-15 87.4 74 68.9
ClCG05G024690 Citrullus lanatus HOM05D003373 ORTHO05D004419 1.1e-15 87.4 115 49.6
Gohir.A05G320900 Gossypium hirsutum HOM05D003373 ORTHO05D004419 1.1e-15 87.4 79 64.6
Gohir.D05G323100 Gossypium hirsutum HOM05D003373 ORTHO05D004419 1.1e-15 87.4 79 64.6
Gorai.009G346800 Gossypium raimondii HOM05D003373 ORTHO05D004419 1.1e-15 87.4 79 64.6
Gorai.012G121700 Gossypium raimondii HOM05D003373 ORTHO05D004419 1.1e-15 87.4 86 58.1
Nn3g17111 Nelumbo nucifera HOM05D003373 ORTHO05D004419 1.1e-15 87.4 109 48.6
Thecc.02G234000 Theobroma cacao HOM05D003373 ORTHO05D004419 1.1e-15 87.4 74 68.9
BraA08t34708Z Brassica rapa HOM05D003373 ORTHO05D004419 1.4e-15 87.0 74 68.9
Duzib268G0991 Durio zibethinus HOM05D003373 ORTHO05D004419 1.4e-15 87.0 78 64.1
COL.COLO4_36201 Corchorus olitorius HOM05D003373 ORTHO05D004419 2.5e-15 86.3 81 61.7
CsaV3_5G032210 Cucumis sativus L. HOM05D003373 ORTHO05D004419 3.2e-15 85.9 80 61.2
EL10Ac6g13134 Beta vulgaris HOM05D003373 ORTHO05D004419 4.2e-15 85.5 81 61.7
BcaB07g32385 Brassica carinata HOM05D003373 ORTHO05D004419 4.2e-15 85.5 74 67.6
Gohir.A04G097600 Gossypium hirsutum HOM05D003373 ORTHO05D004419 4.2e-15 85.5 86 58.1
THA.LOC104822090 Tarenaya hassleriana HOM05D003373 ORTHO05D004419 4.2e-15 85.5 74 64.9
CiPaw.05G141000 Carya illinoinensis HOM05D003373 ORTHO05D004419 5.5e-15 85.1 80 61.2
Duzib251G0793 Durio zibethinus HOM05D003373 ORTHO05D004419 5.5e-15 85.1 106 51.9
Nitab4.5_0000710g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 7.2e-15 84.7 80 63.8
BolC8t49893H Brassica oleracea HOM05D003373 ORTHO05D004419 9.4e-15 84.3 74 67.6
Dinv34191 Davidia involucrata HOM05D003373 ORTHO05D004419 1.2e-14 84.0 109 46.8
PGR119G0099 Punica granatum HOM05D003373 ORTHO05D004419 1.2e-14 84.0 78 61.5
Actinidia31168 Actinidia chinensis HOM05D003373 ORTHO05D004419 1.6e-14 83.6 109 49.5
BcaC07g39253 Brassica carinata HOM05D003373 ORTHO05D004419 1.6e-14 83.6 74 67.6
Nitab4.5_0003297g0010 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.6e-14 83.6 80 63.8
Manes.05G095400 Manihot esculenta HOM05D003373 ORTHO05D004419 2.1e-14 83.2 87 57.5
Aa31LG4G10950 Aethionema arabicum HOM05D003373 ORTHO05D004419 2.7e-14 82.8 74 64.9
arahy.Tifrunner.gnm1.ann1.NIK4ZB Arachis hypogaea HOM05D003373 ORTHO05D004419 2.7e-14 82.8 85 58.8
Lj6A795T73 Lonicera japonica HOM05D003373 ORTHO05D004419 2.7e-14 82.8 78 57.7
Psat2g126240 Pisum sativum HOM05D003373 ORTHO05D004419 2.7e-14 82.8 88 56.8
CARHR024810 Cardamine hirsuta HOM05D003373 ORTHO05D004419 3.6e-14 82.4 74 64.9
Cfa009067 Carpinus fangiana HOM05D003373 ORTHO05D004419 3.6e-14 82.4 80 56.2
Zm00001eb053410 Zea mays HOM05D003373 ORTHO05D004419 3.6e-14 82.4 76 59.2
Cpa.g.sc5.285 Carica papaya HOM05D003373 ORTHO05D004419 4.6e-14 82.0 86 54.7
Manes.01G192000 Manihot esculenta HOM05D003373 ORTHO05D004419 4.6e-14 82.0 123 47.2
Nn4g23016 Nelumbo nucifera HOM05D003373 ORTHO05D004419 4.6e-14 82.0 86 55.8
Sed0023513 Sechium edule HOM05D003373 ORTHO05D004419 4.6e-14 82.0 74 63.5
Solyc05g006900.2 Solanum lycopersicum HOM05D003373 ORTHO05D004419 4.6e-14 82.0 79 60.8
Sopen05g002860 Solanum pennellii HOM05D003373 ORTHO05D004419 4.6e-14 82.0 79 60.8
arahy.Tifrunner.gnm1.ann1.YF4WKN Arachis hypogaea HOM05D003373 ORTHO05D004419 6.1e-14 81.6 85 57.6
Haze_12097 Corylus avellana HOM05D003373 ORTHO05D004419 6.1e-14 81.6 86 54.7
Dinv24947 Davidia involucrata HOM05D003373 ORTHO05D004419 6.1e-14 81.6 118 45.8
Hma1.2p1_1045F.1_g251400 Hydrangea macrophylla HOM05D003373 ORTHO05D004419 6.1e-14 81.6 76 61.8
CANSAT35G1086 Cannabis sativa HOM05D003373 ORTHO05D004419 7.9e-14 81.3 81 56.8
QL03p066330 Quercus lobata HOM05D003373 ORTHO05D004419 7.9e-14 81.3 84 57.1
Lj3A1043T79 Lonicera japonica HOM05D003373 ORTHO05D004419 1.0e-13 80.9 80 53.8
unitig_52.g17172 Utricularia gibba HOM05D003373 ORTHO05D004419 1.0e-13 80.9 88 58.0
Zm00001eb217180 Zea mays HOM05D003373 ORTHO05D004419 1.0e-13 80.9 59 66.1
Atru.chr11.1870 Acer truncatum HOM05D003373 ORTHO05D004419 1.4e-13 80.5 82 53.7
MBI01_g01238_MAGBIO Magnolia biondii HOM05D003373 ORTHO05D004419 1.4e-13 80.5 81 58.0
Nitab4.5_0008971g0050 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.4e-13 80.5 81 58.0
Sabra08G0147700 Salix brachista HOM05D003373 ORTHO05D004419 1.4e-13 80.5 82 58.5
Glyma.01G041300 Glycine max HOM05D003373 ORTHO05D004419 1.8e-13 80.1 59 74.6
Potri.008G194200 Populus trichocarpa HOM05D003373 ORTHO05D004419 1.8e-13 80.1 84 56.0
Actinidia04028 Actinidia chinensis HOM05D003373 ORTHO05D004419 2.3e-13 79.7 80 60.0
MSTRG.13397 Avicennia marina HOM05D003373 ORTHO05D004419 2.3e-13 79.7 116 47.4
Lj2g0024788 Lotus japonicus HOM05D003373 ORTHO05D004419 2.3e-13 79.7 74 63.5
MSTRG.2363 Avicennia marina HOM05D003373 ORTHO05D004419 3.0e-13 79.3 119 46.2
Haze_17060 Corylus avellana HOM05D003373 ORTHO05D004419 3.0e-13 79.3 86 54.7
PSO017G0861 Papaver somniferum HOM05D003373 ORTHO05D004419 3.0e-13 79.3 61 70.5
PSO478G2017 Papaver somniferum HOM05D003373 ORTHO05D004419 3.0e-13 79.3 61 70.5
TPR.G31079 Trifolium pratense HOM05D003373 ORTHO05D004419 3.0e-13 79.3 88 54.5
TAR622G0593 Trochodendron aralioides HOM05D003373 ORTHO05D004419 3.0e-13 79.3 80 53.8
Aqoxy3G03242 Aquilegia oxysepala HOM05D003373 ORTHO05D004419 3.9e-13 79.0 85 56.5
CDE08G0466 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 3.9e-13 79.0 79 55.7
Migut.L01354 Erythranthe guttata HOM05D003373 ORTHO05D004419 3.9e-13 79.0 85 58.8
TAR374G1081 Trochodendron aralioides HOM05D003373 ORTHO05D004419 3.9e-13 79.0 86 53.5
CDE09G0772 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 5.1e-13 78.6 79 54.4
Lalb_Chr04g0256431 Lupinus albus HOM05D003373 ORTHO05D004419 5.1e-13 78.6 80 58.8
Potri.010G034900 Populus trichocarpa HOM05D003373 ORTHO05D004419 5.1e-13 78.6 78 57.7
PGR102G0330 Punica granatum HOM05D003373 ORTHO05D004419 5.1e-13 78.6 78 55.1
TWI18G0023 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 5.1e-13 78.6 79 55.7
AUR62026466 Chenopodium quinoa HOM05D003373 ORTHO05D004419 6.7e-13 78.2 66 62.1
Nitab4.5_0002382g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 6.7e-13 78.2 81 56.8
Cc11_g13620 Coffea canephora HOM05D003373 ORTHO05D004419 8.8e-13 77.8 73 61.6
TWI36G0800 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 8.8e-13 77.8 79 55.7
VMungo1215G0200 Vigna mungo HOM05D003373 ORTHO05D004419 8.8e-13 77.8 59 67.8
Ca_04701_v3 Cicer arietinum L. HOM05D003373 ORTHO05D004419 1.1e-12 77.4 88 54.5
Lalb_Chr10g0097901 Lupinus albus HOM05D003373 ORTHO05D004419 1.1e-12 77.4 79 58.2
Phvul.002G067800 Phaseolus vulgaris HOM05D003373 ORTHO05D004419 1.1e-12 77.4 59 67.8
RcHm_v2.0_Chr4g0445281 Rosa chinensis HOM05D003373 ORTHO05D004419 1.1e-12 77.4 87 52.9
Sabra10G0029900 Salix brachista HOM05D003373 ORTHO05D004419 1.1e-12 77.4 84 54.8
Sc11g0001580 Simmondsia chinensis HOM05D003373 ORTHO05D004419 1.1e-12 77.4 81 56.8
TAR629G0400 Trochodendron aralioides HOM05D003373 ORTHO05D004419 1.1e-12 77.4 74 58.1
DCAR_007126 Daucus carota HOM05D003373 ORTHO05D004419 2.0e-12 76.6 77 57.1
Glyma.02G022800 Glycine max HOM05D003373 ORTHO05D004419 2.0e-12 76.6 82 57.3
Hund25279 Selenicereus undatus HOM05D003373 ORTHO05D004419 2.0e-12 76.6 76 57.9
Eucgr.B02587 Eucalyptus grandis HOM05D003373 ORTHO05D004419 2.5e-12 76.3 78 56.4
PSO591G0008 Papaver somniferum HOM05D003373 ORTHO05D004419 3.3e-12 75.9 59 69.5
Peaxi162Scf00209g00714 Petunia axillaris HOM05D003373 ORTHO05D004419 3.3e-12 75.9 59 67.8
Ah.02g131980 Amaranthus hybridus HOM05D003373 ORTHO05D004419 4.3e-12 75.5 74 58.1
PGSC0003DMG400017635 Solanum tuberosum HOM05D003373 ORTHO05D004419 4.3e-12 75.5 79 57.0
AUR62026278 Chenopodium quinoa HOM05D003373 ORTHO05D004419 5.7e-12 75.1 59 61.0
SGA_v2.0_scaffold87G26974 Striga asiatica HOM05D003373 ORTHO05D004419 5.7e-12 75.1 81 56.8
HPP92_019601 Vanilla planifolia HOM05D003373 ORTHO05D004419 5.7e-12 75.1 72 59.7
HPP92_019651 Vanilla planifolia HOM05D003373 ORTHO05D004419 5.7e-12 75.1 72 59.7
PSO832G2541 Papaver somniferum HOM05D003373 ORTHO05D004419 7.4e-12 74.7 59 67.8
CSS0018229 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 9.7e-12 74.3 85 51.8
Medtr5g037960 Medicago truncatula HOM05D003373 ORTHO05D004419 9.7e-12 74.3 81 55.6
Sopen01g006060 Solanum pennellii HOM05D003373 ORTHO05D004419 9.7e-12 74.3 74 59.5
vmacro16318 Vaccinium macrocarpon HOM05D003373 ORTHO05D004419 9.7e-12 74.3 81 54.3
Lsat_1_v5_gn_4_9400 Lactuca sativa HOM05D003373 ORTHO05D004419 1.3e-11 73.9 123 43.1
PGSC0003DMG400007711 Solanum tuberosum HOM05D003373 ORTHO05D004419 1.3e-11 73.9 80 55.0
unitig_62.g23682 Utricularia gibba HOM05D003373 ORTHO05D004419 1.3e-11 73.9 88 54.5
MD13G1080700 Malus domestica HOM05D003373 ORTHO05D004419 1.7e-11 73.6 59 66.1
ATR0665G354 Amborella trichopoda HOM05D003373 ORTHO05D004419 2.2e-11 73.2 61 63.9
VMungo0540G1512 Vigna mungo HOM05D003373 ORTHO05D013173 2.2e-11 73.2 59 66.1
Solyc01g010440.4 Solanum lycopersicum HOM05D003373 ORTHO05D004419 2.8e-11 72.8 111 44.1
MD16G1080200 Malus domestica HOM05D003373 ORTHO05D004419 4.8e-11 72.0 59 66.1
Oeu043029.1 Olea europaea HOM05D003373 ORTHO05D004419 6.3e-11 71.6 61 67.2
Rhsim12G0129000 Rhododendron simsii HOM05D003373 ORTHO05D004419 8.2e-11 71.2 79 50.6
SGA_v2.0_scaffold467G52045 Striga asiatica HOM05D003373 ORTHO05D004419 8.2e-11 71.2 106 44.3
SGA_v2.0_scaffold63G21675 Striga asiatica HOM05D003373 ORTHO05D004419 8.2e-11 71.2 88 53.4
Migut.E00120 Erythranthe guttata HOM05D003373 ORTHO05D004419 1.1e-10 70.9 59 66.1
FAN07G0752 Fragaria x ananassa HOM05D003373 ORTHO05D004419 1.1e-10 70.9 80 53.8
FvH4_4g35680 Fragaria vesca HOM05D003373 ORTHO05D004419 1.8e-10 70.1 74 54.1
FAN22G0404 Fragaria x ananassa HOM05D003373 ORTHO05D004419 1.8e-10 70.1 74 54.1
PGSC0003DMG400010979 Solanum tuberosum HOM05D003373 ORTHO05D013173 1.8e-10 70.1 71 56.3
Os03g0688200 Oryza sativa ssp. japonica HOM05D003373 ORTHO05D004419 2.4e-10 69.7 72 52.8
SalBow2G1107 Salvia bowleyana HOM05D003373 ORTHO05D004419 2.4e-10 69.7 59 59.3
FAN17G1936 Fragaria x ananassa HOM05D003373 ORTHO05D004419 3.1e-10 69.3 74 54.1
Oeu057174.1 Olea europaea HOM05D003373 ORTHO05D004419 3.1e-10 69.3 65 55.4
DCAR_031055 Daucus carota HOM05D003373 ORTHO05D004419 5.3e-10 68.6 74 56.8
FAN12G3521 Fragaria x ananassa HOM05D003373 ORTHO05D004419 5.3e-10 68.6 74 52.7
SEGI_31454 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 5.3e-10 68.6 67 58.2
VMungo0464G1165 Vigna mungo HOM05D003373 ORTHO05D004419 5.3e-10 68.6 59 62.7
SalBow3G2377 Salvia bowleyana HOM05D003373 ORTHO05D004419 9.1e-10 67.8 59 62.7
GSVIVG01020088001 Vitis vinifera HOM05D003373 ORTHO05D004419 9.1e-10 67.8 69 56.5
Lalb_Chr17g0340241 Lupinus albus HOM05D003373 ORTHO05D004419 2.0e-09 66.6 80 50.0
Mapoly0083s0034 Marchantia polymorpha HOM05D003373 ORTHO05D004419 2.0e-09 66.6 59 55.9
Pp3c16_590 Physcomitrium patens HOM05D003373 ORTHO05D004419 2.6e-09 66.2 59 55.9
Lsat_1_v5_gn_8_163340 Lactuca sativa HOM05D003373 ORTHO05D004419 3.4e-09 65.9 86 46.5
HanXRQChr17g0570411 Helianthus annuus HOM05D003373 ORTHO05D004419 4.5e-09 65.5 86 46.5
SGA_v2.0_scaffold166G38286 Striga asiatica HOM05D003373 ORTHO05D004419 5.9e-09 65.1 61 57.4
CBR_g4061 Chara braunii HOM05D003373 ORTHO05D004419 2.9e-08 62.8 67 50.7
SMO012G0008 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 3.8e-08 62.4 59 50.8
SMO141G0251 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 3.8e-08 62.4 59 50.8
SEGI_00885 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 3.8e-08 62.4 61 55.7
Pp3c25_8180 Physcomitrium patens HOM05D003373 ORTHO05D004419 8.5e-08 61.2 59 52.5
Pp3c25_8182 Physcomitrium patens HOM05D003373 ORTHO05D004419 8.5e-08 61.2 59 52.5
AagrBONN_evm.TU.Sc2ySwM_228.3903 Anthoceros agrestis HOM05D003373 ORTHO05D004419 2.5e-07 59.7 59 50.8
CiPaw.06G080000 Carya illinoinensis HOM05D003373 ORTHO05D004419 2.5e-07 59.7 57 57.9
HanXRQChr03g0092821 Helianthus annuus HOM05D003373 ORTHO05D004419 2.5e-07 59.7 121 33.1
SalBow8G0803 Salvia bowleyana HOM05D003373 ORTHO05D004419 1.2e-06 57.4 95 44.2
Lsat_1_v5_gn_8_36201 Lactuca sativa HOM05D003373 ORTHO05D004419 1.6e-06 57.0 81 40.7
ECA234G3640 Erigeron canadensis HOM05D003373 ORTHO05D004419 2.1e-06 56.6 101 40.6


User provided reference genes

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