Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 1.6e-97 359.4 179 100.0
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 4.4e-95 351.3 175 100.0
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 2.2e-94 349.0 175 99.4
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 1.9e-93 345.9 179 96.6
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 3.5e-92 341.7 170 100.0
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 1.7e-91 339.3 170 99.4
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 4.3e-90 334.7 179 92.7
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 1.4e-88 329.7 179 91.1
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.4e-88 329.7 180 92.2
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 2.0e-87 325.9 179 89.9
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 3.4e-87 325.1 184 88.6
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 1.1e-85 320.1 185 86.5
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 2.4e-85 318.9 180 90.6
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 1.7e-83 312.8 189 84.7
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 6.6e-83 310.8 179 84.9
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 1.1e-77 293.5 180 81.1
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 2.4e-77 292.4 180 81.7
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 4.2e-77 291.6 179 79.3
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 4.2e-77 291.6 180 82.8
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 4.2e-77 291.6 180 82.8
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 1.2e-76 290.0 179 79.3
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.1e-76 289.3 180 82.2
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 3.5e-76 288.5 180 82.2
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 3.5e-76 288.5 177 82.5
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.5e-76 288.5 179 83.8
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 3.5e-76 288.5 180 80.0
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 3.5e-76 288.5 179 82.7
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 4.6e-76 288.1 178 80.9
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 6.0e-76 287.7 177 81.9
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 6.0e-76 287.7 179 82.1
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 6.0e-76 287.7 179 82.1
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 7.8e-76 287.3 180 81.1
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 1.0e-75 287.0 172 84.3
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 1.0e-75 287.0 180 81.7
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 1.3e-75 286.6 180 77.8
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 1.7e-75 286.2 179 81.0
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 2.3e-75 285.8 179 78.8
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.3e-75 285.8 179 82.7
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.9e-75 285.0 179 82.7
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.9e-75 285.0 179 82.7
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.1e-74 283.5 183 78.7
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 1.1e-74 283.5 184 76.6
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 2.5e-74 282.3 170 84.7
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 4.3e-74 281.6 180 76.7
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 5.6e-74 281.2 179 78.2
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 7.3e-74 280.8 172 83.1
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 9.6e-74 280.4 178 77.5
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 1.6e-73 279.6 179 77.7
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.6e-73 279.6 172 82.6
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.1e-72 276.9 179 76.0
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 1.4e-72 276.6 179 78.8
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 1.8e-72 276.2 181 77.3
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 3.1e-72 275.4 173 80.9
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 3.1e-72 275.4 160 83.1
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 4.0e-72 275.0 179 76.0
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 4.0e-72 275.0 171 79.5
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 1.5e-71 273.1 161 83.2
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 1.5e-71 273.1 161 83.9
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 2.0e-71 272.7 202 70.8
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 2.6e-71 272.3 177 76.3
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 2.6e-71 272.3 180 77.2
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 5.8e-71 271.2 160 81.9
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 9.9e-71 270.4 176 75.0
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 1.3e-70 270.0 159 83.0
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 1.3e-70 270.0 158 84.8
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 1.7e-70 269.6 175 76.6
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 2.2e-70 269.2 159 82.4
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.2e-70 269.2 179 76.5
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 3.8e-70 268.5 177 75.1
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 3.8e-70 268.5 161 82.6
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 6.4e-70 267.7 171 78.9
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 8.4e-70 267.3 178 74.2
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 8.4e-70 267.3 161 82.6
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.1e-69 266.9 159 83.0
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 1.4e-69 266.5 158 81.0
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 1.4e-69 266.5 183 72.7
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.9e-69 266.2 179 72.1
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 2.4e-69 265.8 161 80.7
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 2.4e-69 265.8 179 73.7
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 4.2e-69 265.0 174 73.6
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 4.2e-69 265.0 179 72.1
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 5.4e-69 264.6 178 72.5
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 5.4e-69 264.6 180 75.6
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 1.2e-68 263.5 160 79.4
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 2.1e-68 262.7 178 72.5
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 3.5e-68 261.9 177 72.9
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 6.0e-68 261.2 158 79.7
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 6.0e-68 261.2 176 73.9
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 6.0e-68 261.2 159 81.1
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 7.9e-68 260.8 161 78.3
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 1.3e-67 260.0 159 81.1
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.3e-67 260.0 159 81.1
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 2.3e-67 259.2 159 78.0
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 3.0e-67 258.8 171 77.8
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 3.9e-67 258.5 180 71.7
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 1.1e-66 256.9 171 76.0
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.1e-66 256.9 180 71.7
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 1.5e-66 256.5 145 86.9
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 1.9e-66 256.1 153 82.4
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 2.5e-66 255.8 176 71.0
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 9.6e-66 253.8 145 85.5
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 4.8e-65 251.5 146 83.6
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 5.3e-64 248.1 168 73.2
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 1.2e-63 246.9 137 89.1
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 4.5e-63 245.0 176 67.6
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 5.8e-63 244.6 158 75.3
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 5.8e-63 244.6 145 81.4
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 1.7e-62 243.0 140 85.0
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 1.7e-62 243.0 174 69.5
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.7e-62 243.0 144 81.9
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 8.4e-62 240.7 142 81.7
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.9e-61 239.6 148 80.4
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 5.1e-59 231.5 137 83.9
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 5.7e-58 228.0 175 66.9
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.8e-57 225.7 179 68.2
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 6.2e-57 224.6 168 67.9
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 1.9e-53 213.0 135 79.3
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.3e-51 206.8 155 69.7
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 2.3e-51 206.1 183 55.2
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 1.1e-50 203.8 171 56.7
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 1.6e-49 199.9 164 62.8
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 5.9e-47 191.4 110 85.5
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 5.9e-47 191.4 117 77.8
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 2.2e-46 189.5 110 85.5
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 9.4e-45 184.1 117 82.1
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 5.1e-43 178.3 143 65.0
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 9.7e-42 174.1 128 68.0
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 8.2e-41 171.0 113 74.3
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 2.2e-38 162.9 152 52.0
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 5.5e-37 158.3 137 62.0
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.1e-36 154.8 83 91.6
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 1.4e-35 153.7 100 73.0
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.7e-35 151.4 116 69.0
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.7e-35 151.4 128 61.7
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 5.7e-34 148.3 129 59.7
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.6e-31 139.4 83 81.9
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.0e-30 137.5 83 84.3
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.8e-30 135.6 68 95.6
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 1.9e-29 133.3 89 75.3
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 2.5e-29 132.9 188 46.3
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 6.7e-27 124.8 154 48.1
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 4.1e-24 115.5 66 84.8
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 9.1e-24 114.4 85 70.6
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 5.0e-22 108.6 120 55.0
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 1.9e-21 106.7 58 89.7
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.2e-21 105.9 85 68.2
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 5.5e-21 105.1 65 78.5
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 1.7e-17 93.6 52 84.6
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 9.1e-16 87.8 58 67.2
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 1.3e-06 57.4 36 75.0
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.6e-06 55.1 67 47.8


User provided reference genes

Program Settings