Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 0.0e+00 1189.9 615 100.0
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 3.0e-98 363.6 505 43.6
Thhalv10015673m.g Eutrema salsugineum HOM05D003798 ORTHO05D023659 3.0e-50 204.1 431 33.4
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 1.1e-33 149.1 393 30.8
A09p26460 Brassica napus HOM05D040525 ORTHO05D023659 1.1e-25 122.5 74 83.8
BraA09t38221Z Brassica rapa HOM05D040525 ORTHO05D023659 7.4e-25 119.8 74 82.4
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.9e-21 107.8 276 29.3
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 1.1e-20 105.9 399 28.3
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 9.4e-20 102.8 315 30.5
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 4.7e-19 100.5 313 28.8
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.4e-18 99.0 311 30.9
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.8e-18 98.6 296 31.1
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 2.3e-18 98.2 296 30.7
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 5.2e-18 97.1 311 30.2
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 6.8e-18 96.7 278 26.6
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 6.8e-18 96.7 345 26.1
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 6.8e-18 96.7 314 28.0
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 6.8e-18 96.7 312 30.1
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 8.8e-18 96.3 316 28.8
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 8.8e-18 96.3 289 30.1
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.2e-17 95.9 308 29.2
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.5e-17 95.5 344 29.1
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 1.5e-17 95.5 311 30.5
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 1.5e-17 95.5 311 30.5
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 2.0e-17 95.1 312 29.8
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 2.0e-17 95.1 280 28.6
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.6e-17 94.7 287 31.4
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 2.6e-17 94.7 345 29.3
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 2.6e-17 94.7 313 29.1
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 3.4e-17 94.4 343 29.4
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 4.4e-17 94.0 387 27.4
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 4.4e-17 94.0 388 26.8
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 5.7e-17 93.6 312 29.8
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 5.7e-17 93.6 312 29.8
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 7.5e-17 93.2 385 27.0
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 9.7e-17 92.8 311 30.5
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 1.3e-16 92.4 307 29.3
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 1.7e-16 92.0 340 28.5
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.2e-16 91.7 345 29.0
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 2.2e-16 91.7 309 28.2
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 2.2e-16 91.7 307 29.0
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 2.8e-16 91.3 347 28.2
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 2.8e-16 91.3 285 27.7
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 2.8e-16 91.3 382 27.0
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.7e-16 90.9 287 28.6
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 3.7e-16 90.9 345 29.3
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 3.7e-16 90.9 294 29.9
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 4.8e-16 90.5 282 30.1
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 4.8e-16 90.5 280 27.9
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 4.8e-16 90.5 300 28.7
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 4.8e-16 90.5 307 29.0
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 4.8e-16 90.5 305 29.8
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 6.3e-16 90.1 294 29.6
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 8.3e-16 89.7 349 26.6
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 1.1e-15 89.4 306 30.1
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.1e-15 89.4 343 27.1
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 1.1e-15 89.4 298 29.2
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.1e-15 89.4 313 27.8
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 1.4e-15 89.0 308 29.2
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 2.4e-15 88.2 319 27.3
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 2.4e-15 88.2 312 28.8
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 3.1e-15 87.8 312 28.5
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 3.1e-15 87.8 386 26.4
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 4.1e-15 87.4 344 27.6
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 5.3e-15 87.0 315 27.6
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 5.3e-15 87.0 314 28.7
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 5.3e-15 87.0 301 28.6
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 5.3e-15 87.0 308 28.6
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 5.3e-15 87.0 308 28.6
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 5.3e-15 87.0 310 28.1
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 7.0e-15 86.7 345 28.1
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 7.0e-15 86.7 313 27.5
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 7.0e-15 86.7 313 27.5
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 9.1e-15 86.3 313 27.2
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 9.1e-15 86.3 313 27.2
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 9.1e-15 86.3 307 29.0
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.2e-14 85.9 343 27.4
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.2e-14 85.9 281 28.1
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 1.2e-14 85.9 307 29.0
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.6e-14 85.5 267 29.6
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.6e-14 85.5 274 29.2
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 1.6e-14 85.5 309 28.5
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.6e-14 85.5 309 28.5
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.6e-14 85.5 318 30.2
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 2.0e-14 85.1 276 28.3
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 2.0e-14 85.1 304 29.6
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 2.7e-14 84.7 342 26.9
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.7e-14 84.7 283 29.3
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 4.5e-14 84.0 309 27.2
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.9e-14 83.6 309 28.2
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 7.7e-14 83.2 300 28.3
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.0e-13 82.8 285 26.3
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 1.3e-13 82.4 324 26.2
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 1.3e-13 82.4 305 27.9
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.7e-13 82.0 277 30.0
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 2.2e-13 81.6 302 28.1
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 3.8e-13 80.9 289 27.0
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 8.5e-13 79.7 303 27.4
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 2.5e-12 78.2 301 26.2
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.5e-12 78.2 300 27.3
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 4.2e-12 77.4 338 25.1
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 5.5e-12 77.0 381 26.8
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 7.2e-12 76.6 271 26.2
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 1.2e-11 75.9 309 24.3
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 3.0e-10 71.2 369 25.7
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 4.0e-10 70.9 283 27.6
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 1.2e-09 69.3 160 31.9
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 2.6e-09 68.2 283 26.9
AL2G38120 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 6.3e-08 63.5 118 33.1
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.4e-07 62.4 165 30.9
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.4e-07 60.5 282 25.9
Thecc.02G010500 Theobroma cacao HOM05D000710 ORTHO05D000336 7.0e-07 60.1 258 26.0


User provided reference genes

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