Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 1.4e-170 602.8 307 100.0
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 1.4e-170 602.8 307 100.0
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 3.6e-169 598.2 308 99.7
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 1.4e-157 559.7 307 92.8
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 8.8e-144 513.8 307 87.3
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 4.5e-140 501.5 308 84.4
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 2.3e-136 489.2 306 84.6
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 1.2e-135 486.9 312 83.7
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 4.4e-135 485.0 307 82.4
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 8.6e-123 444.1 292 78.1
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 1.8e-120 436.4 264 84.8
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 6.4e-118 427.9 300 75.0
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 1.0e-115 420.6 305 70.8
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 1.5e-111 406.8 299 71.2
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 9.9e-111 404.1 275 73.5
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 2.2e-110 402.9 290 70.3
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 4.9e-110 401.7 306 66.7
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 4.9e-110 401.7 300 69.7
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 6.4e-110 401.4 303 69.6
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 6.4e-110 401.4 306 67.0
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.4e-109 400.2 306 66.3
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 1.9e-109 399.8 306 67.0
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 1.9e-109 399.8 279 72.8
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 3.2e-109 399.1 300 69.7
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 3.2e-109 399.1 305 68.5
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 1.6e-108 396.7 289 68.2
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 2.7e-108 396.0 306 68.0
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 7.8e-108 394.4 275 72.7
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 7.8e-108 394.4 304 67.1
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 1.3e-107 393.7 279 72.0
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 2.3e-107 392.9 275 72.4
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 2.3e-107 392.9 293 70.0
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 2.3e-107 392.9 293 70.0
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 3.0e-107 392.5 276 72.8
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 6.6e-107 391.3 270 72.2
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 6.6e-107 391.3 274 73.4
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 6.6e-107 391.3 306 68.3
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 8.6e-107 391.0 304 67.8
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 4.3e-106 388.7 269 71.4
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 5.6e-106 388.3 269 70.3
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 7.3e-106 387.9 306 66.7
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 7.3e-106 387.9 275 72.7
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 1.2e-105 387.1 268 71.6
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 1.6e-105 386.7 270 71.5
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.8e-105 386.0 324 63.9
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 3.6e-105 385.6 299 68.2
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 3.6e-105 385.6 274 71.2
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 4.7e-105 385.2 270 71.1
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 4.7e-105 385.2 269 71.4
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 6.2e-105 384.8 275 72.0
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 8.1e-105 384.4 321 64.5
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 1.4e-104 383.6 274 71.2
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 2.4e-104 382.9 270 70.7
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 5.2e-104 381.7 273 69.2
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 6.8e-104 381.3 295 66.8
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 8.9e-104 380.9 263 72.2
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 1.2e-103 380.6 269 71.0
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 2.0e-103 379.8 273 70.3
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 2.6e-103 379.4 274 67.5
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 3.4e-103 379.0 270 69.6
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 7.6e-103 377.9 269 70.6
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 7.6e-103 377.9 274 70.1
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 9.9e-103 377.5 275 70.2
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 1.7e-102 376.7 289 68.5
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 2.2e-102 376.3 273 67.0
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 3.8e-102 375.6 270 69.3
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 3.8e-102 375.6 269 69.9
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 8.4e-102 374.4 290 66.6
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 8.4e-102 374.4 290 66.6
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 8.4e-102 374.4 319 62.4
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 1.4e-101 373.6 290 66.2
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 1.9e-101 373.2 321 63.2
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 1.9e-101 373.2 269 69.5
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 1.2e-100 370.5 271 67.9
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-100 370.2 238 76.9
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 3.0e-99 365.9 278 67.6
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 1.1e-98 364.0 319 60.8
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 1.5e-98 363.6 319 58.6
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 5.6e-98 361.7 297 63.6
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 7.3e-98 361.3 277 65.7
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 1.3e-97 360.5 274 66.8
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 1.6e-97 360.1 274 66.8
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 3.6e-97 359.0 271 65.3
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 2.4e-96 356.3 231 74.9
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 1.5e-95 353.6 231 74.5
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 2.6e-95 352.8 231 73.6
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 1.3e-94 350.5 293 60.1
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 2.2e-94 349.7 304 62.5
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 2.2e-94 349.7 292 64.4
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 6.4e-94 348.2 271 63.8
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 2.4e-93 346.3 302 61.6
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 4.2e-93 345.5 231 72.7
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 4.2e-93 345.5 288 61.1
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 1.3e-91 340.5 289 60.6
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 5.1e-91 338.6 208 87.0
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 1.9e-90 336.7 273 61.5
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 3.1e-88 329.3 378 51.3
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 5.1e-83 312.0 231 68.8
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 5.1e-83 312.0 266 64.7
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 4.3e-82 308.9 197 75.1
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 6.2e-81 305.1 255 58.4
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 1.4e-77 293.9 254 56.7
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.6e-76 290.4 218 70.2
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 1.6e-73 280.4 297 49.8
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 8.2e-73 278.1 208 73.6
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.2e-71 274.2 174 82.2
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 1.4e-69 267.3 230 61.7
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 1.8e-67 260.4 198 61.1
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 6.7e-67 258.5 231 64.5
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 3.3e-66 256.1 201 66.2
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 1.5e-63 247.3 200 67.0
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 2.6e-63 246.5 203 64.5
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 5.0e-62 242.3 161 75.2
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 1.8e-59 233.8 206 62.6
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 9.7e-58 228.0 197 65.0
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 3.2e-53 213.0 227 51.5
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 4.2e-53 212.6 131 78.6
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 3.7e-49 199.5 142 74.6
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 6.5e-46 188.7 171 60.8
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 8.5e-46 188.3 179 59.8
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-45 187.6 157 65.6
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-45 187.2 157 65.0
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 9.4e-45 184.9 165 62.4
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 9.4e-45 184.9 157 65.0
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-43 180.6 165 61.2
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-43 180.3 157 65.0
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 9.7e-42 174.9 165 59.4
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 2.2e-41 173.7 122 66.4
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-38 164.5 151 60.9
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-37 160.6 165 57.6
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 4.0e-35 152.9 99 78.8
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 2.6e-34 150.2 101 76.2
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 4.4e-34 149.4 124 66.1
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 5.7e-34 149.1 123 65.9
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 2.2e-33 147.1 177 52.5
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 6.3e-33 145.6 159 55.3
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 6.3e-33 145.6 159 55.3
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 1.1e-32 144.8 297 34.0
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-32 144.1 108 72.2
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 5.4e-32 142.5 95 78.9
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.2e-28 131.3 88 69.3
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 4.4e-26 122.9 109 62.4
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-25 121.3 190 44.2
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.5e-23 112.8 138 48.6
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 2.5e-21 107.1 74 67.6
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-20 104.4 69 76.8
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-17 94.7 97 56.7
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-17 94.0 95 57.9
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 2.2e-17 94.0 63 69.8
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 2.7e-15 87.0 58 72.4
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 2.8e-12 77.0 133 37.6
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 2.9e-09 67.0 111 37.8
arahy.Tifrunner.gnm1.ann1.54H2MY Arachis hypogaea HOM05D001155 ORTHO05D015979 1.2e-07 61.6 43 67.4
arahy.Tifrunner.gnm1.ann1.CXRB51 Arachis hypogaea HOM05D004703 ORTHO05D015979 1.2e-07 61.6 40 70.0
arahy.Tifrunner.gnm1.ann1.5AIV52 Arachis hypogaea HOM05D001155 ORTHO05D001080 6.0e-07 59.3 36 72.2


User provided reference genes

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