Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 2843.1 1441 100.0
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 2843.1 1441 100.0
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 2831.6 1460 98.7
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 2753.4 1441 97.2
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 2741.8 1460 95.9
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 2648.6 1443 94.2
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 2516.5 1465 88.4
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 2496.1 1460 87.7
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 2414.4 1474 84.7
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 2359.3 1495 82.1
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 2343.5 1467 82.9
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 2297.7 1525 78.6
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 2091.2 1402 78.4
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 2007.6 1466 71.4
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1605.1 1521 57.3
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1598.9 1515 57.2
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1593.2 1503 57.6
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1585.1 1507 57.6
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1584.3 1503 57.6
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1577.0 1516 55.9
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1575.5 1521 56.5
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1574.7 1501 57.2
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1570.1 1519 57.2
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1557.3 1550 54.8
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1550.4 1508 55.7
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1550.0 1483 57.0
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1537.3 1518 56.1
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1535.4 1508 55.6
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1535.4 1534 54.8
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1528.5 1513 54.8
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1518.1 1503 54.7
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1505.7 1468 56.3
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1492.6 1522 53.5
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1489.2 1522 54.3
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1486.5 1489 55.0
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1481.1 1546 53.7
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1474.1 1602 51.1
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1462.6 1560 52.7
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1438.7 1512 52.9
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1437.9 1515 52.2
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1436.4 1508 52.9
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1436.4 1504 53.3
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1432.9 1496 53.1
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1431.4 1599 50.5
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1429.8 1497 53.4
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1429.5 1499 52.9
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1429.1 1505 51.9
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1427.9 1506 52.5
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1426.4 1503 52.6
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1423.3 1508 51.8
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1423.3 1507 52.3
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1422.1 1513 52.4
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1417.9 1503 52.4
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1417.9 1519 51.8
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1417.1 1495 52.6
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1413.3 1528 51.4
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1411.7 1528 50.5
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1410.6 1509 52.0
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1409.4 1518 51.7
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1405.2 1408 54.0
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1390.9 1504 50.6
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1390.2 1484 51.3
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1388.6 1478 50.8
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1388.6 1508 51.0
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1387.9 1511 50.6
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1385.5 1487 52.1
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1374.0 1343 56.4
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 0.0e+00 1373.2 865 81.4
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1369.0 1564 49.8
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1367.8 1529 50.6
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1366.3 1499 51.6
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1359.0 1506 50.8
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1357.4 1505 50.0
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1355.1 1524 49.7
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1352.4 1580 48.9
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1349.0 1498 49.8
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1343.2 1482 49.9
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1341.6 1488 50.8
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1334.3 1500 49.5
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1330.9 1535 49.5
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1318.5 1504 49.2
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1314.7 1471 50.0
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1302.3 1475 49.7
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1293.5 1409 51.7
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1291.9 1491 48.4
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1282.7 1527 49.0
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1261.5 1525 48.0
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1209.1 1350 50.7
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1204.5 1580 45.3
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1180.2 1285 51.8
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1179.5 1526 45.2
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1157.5 1513 46.1
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1124.4 1350 48.9
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1080.1 1156 52.4
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 1.2e-302 1043.9 1508 42.2
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 2.8e-296 1022.7 1102 52.5
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 9.5e-265 917.9 981 51.9
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 1.5e-238 830.9 1621 35.8
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 9.8e-177 625.5 479 67.4
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 4.9e-176 623.2 1452 31.1
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 4.1e-167 593.6 484 65.3
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 3.0e-141 507.7 1035 34.7
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 7.1e-135 486.5 678 42.8
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 1.1e-111 409.5 395 55.7
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 1.4e-58 233.0 197 58.9
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.1e-55 223.4 501 31.9
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 8.6e-48 197.2 164 65.2
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 8.6e-32 144.1 103 63.1
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 8.4e-27 127.5 91 61.5
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 1.6e-25 123.2 85 71.8
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 3.9e-24 118.6 83 66.3
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 4.3e-23 115.2 89 58.4
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.3e-22 113.6 87 67.8
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.3e-22 113.6 87 67.8
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 3.5e-17 95.5 77 66.2
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.3e-16 93.6 67 74.6
AL6G45530 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 2.4e-10 72.8 51 68.6
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 8.7e-08 64.3 71 53.5


User provided reference genes

Program Settings