Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21082 Brassica carinata HOM05D001444 ORTHO05D014980 1.2e-121 439.9 227 100.0
BolC5t32653H Brassica oleracea HOM05D001444 ORTHO05D014980 2.9e-99 365.5 234 85.5
C09p52310 Brassica napus HOM05D001444 ORTHO05D014980 1.3e-86 323.6 235 77.4
C05p39200 Brassica napus HOM05D001444 ORTHO05D014980 2.1e-78 296.2 213 80.8
A02p38980 Brassica napus HOM05D001444 ORTHO05D003766 2.4e-61 239.6 204 68.6
BcaC03g17826 Brassica carinata HOM05D001444 ORTHO05D003766 5.3e-61 238.4 214 65.9
C02p58570 Brassica napus HOM05D001444 ORTHO05D003766 9.0e-61 237.7 203 68.5
BcaNung03919 Brassica carinata HOM05D001444 ORTHO05D003766 2.6e-60 236.1 203 68.0
Sp2g21140 Schrenkiella parvula HOM05D001444 ORTHO05D003766 4.5e-60 235.3 202 68.3
BraA02t08868Z Brassica rapa HOM05D001444 ORTHO05D003766 1.0e-59 234.2 229 62.0
A06p37080 Brassica napus HOM05D001444 ORTHO05D003766 1.7e-59 233.4 203 67.0
C07p41360 Brassica napus HOM05D001444 ORTHO05D003766 2.2e-59 233.0 203 67.5
BcaC05g27912 Brassica carinata HOM05D001444 ORTHO05D003766 2.9e-59 232.6 167 79.6
BcaNung03668 Brassica carinata HOM05D001444 ORTHO05D003766 3.8e-59 232.3 204 66.7
Carub.0006s2452 Capsella rubella HOM05D001444 ORTHO05D003766 3.8e-59 232.3 204 66.7
BolC2t11917H Brassica oleracea HOM05D001444 ORTHO05D003766 5.0e-59 231.9 218 63.8
Thhalv10003617m.g Eutrema salsugineum HOM05D001444 ORTHO05D003766 1.9e-58 229.9 214 63.6
Aa31LG11G9790 Aethionema arabicum HOM05D001444 ORTHO05D003766 2.5e-58 229.6 186 69.9
AL6G38730 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 3.2e-58 229.2 214 63.6
CARHR186670 Cardamine hirsuta HOM05D001444 ORTHO05D003766 3.2e-58 229.2 214 63.6
BraA06t26633Z Brassica rapa HOM05D001444 ORTHO05D003766 4.2e-58 228.8 204 66.7
AT5G26860 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 7.2e-58 228.0 214 63.1
BolC7t44666H Brassica oleracea HOM05D001444 ORTHO05D003766 9.4e-58 227.6 205 66.3
BolC9t58100H Brassica oleracea HOM05D001444 ORTHO05D014980 2.7e-57 226.1 171 73.7
C09p35940 Brassica napus HOM05D001444 ORTHO05D014980 3.0e-56 222.6 165 77.0
BolC9t56426H Brassica oleracea HOM05D001444 ORTHO05D014980 3.0e-56 222.6 165 77.0
C05p14480 Brassica napus HOM05D001444 ORTHO05D014980 2.5e-55 219.5 165 76.4
SGA_v2.0_scaffold37G14611 Striga asiatica HOM05D001444 ORTHO05D003766 1.3e-54 217.2 204 60.3
ClCG00G002460 Citrullus lanatus HOM05D001444 ORTHO05D003766 3.7e-54 215.7 213 58.2
ClCG02G014960 Citrullus lanatus HOM05D001444 ORTHO05D003766 3.7e-54 215.7 213 58.2
Sc06g0005760 Simmondsia chinensis HOM05D001444 ORTHO05D003766 4.8e-54 215.3 201 61.2
GSVIVG01031236001 Vitis vinifera HOM05D001444 ORTHO05D003766 6.3e-54 214.9 214 57.9
BolC8t47133H Brassica oleracea HOM05D001444 ORTHO05D014980 1.4e-53 213.8 169 71.0
Ciclev10000120m.g Citrus clementina HOM05D001444 ORTHO05D003766 1.4e-53 213.8 203 60.6
Migut.N01380 Erythranthe guttata HOM05D001444 ORTHO05D003766 1.8e-53 213.4 204 59.3
QL03p039871 Quercus lobata HOM05D001444 ORTHO05D003766 1.8e-53 213.4 214 57.5
CiPaw.07G029500 Carya illinoinensis HOM05D001444 ORTHO05D003766 2.4e-53 213.0 214 57.9
MSTRG.27942 Avicennia marina HOM05D001444 ORTHO05D003766 4.1e-53 212.2 204 58.8
Glyma.20G097700 Glycine max HOM05D001444 ORTHO05D003766 4.1e-53 212.2 214 56.5
VMungo0720G2265 Vigna mungo HOM05D001444 ORTHO05D003766 4.1e-53 212.2 214 57.0
Manes.08G111500 Manihot esculenta HOM05D001444 ORTHO05D003766 5.3e-53 211.8 214 57.9
Thecc.05G322700 Theobroma cacao HOM05D001444 ORTHO05D003766 5.3e-53 211.8 216 57.9
Cfa006700 Carpinus fangiana HOM05D001444 ORTHO05D003766 6.9e-53 211.5 214 57.0
Glyma.10G147200 Glycine max HOM05D001444 ORTHO05D003766 6.9e-53 211.5 214 56.5
Gohir.D11G283300 Gossypium hirsutum HOM05D001444 ORTHO05D003766 6.9e-53 211.5 216 57.4
Gorai.007G306200 Gossypium raimondii HOM05D001444 ORTHO05D003766 6.9e-53 211.5 216 57.4
Hma1.2p1_0008F-1.1_g005610 Hydrangea macrophylla HOM05D001444 ORTHO05D003766 6.9e-53 211.5 204 59.8
Solyc10g024320.2 Solanum lycopersicum HOM05D001444 ORTHO05D003766 6.9e-53 211.5 207 58.5
Sopen10g009280 Solanum pennellii HOM05D001444 ORTHO05D003766 6.9e-53 211.5 207 58.5
CANSAT54G1984 Cannabis sativa HOM05D001444 ORTHO05D003766 9.1e-53 211.1 214 57.5
DCAR_005419 Daucus carota HOM05D001444 ORTHO05D003766 9.1e-53 211.1 246 52.4
DCAR_017356 Daucus carota HOM05D001444 ORTHO05D003766 9.1e-53 211.1 207 58.0
Gohir.A11G273200 Gossypium hirsutum HOM05D001444 ORTHO05D003766 9.1e-53 211.1 215 57.7
Sabra13G0007500 Salix brachista HOM05D001444 ORTHO05D003766 1.2e-52 210.7 214 57.0
Medtr1g084020 Medicago truncatula HOM05D001444 ORTHO05D003766 2.0e-52 209.9 214 56.5
TPR.G2620 Trifolium pratense HOM05D001444 ORTHO05D003766 2.0e-52 209.9 214 57.0
C08p03360 Brassica napus HOM05D001444 ORTHO05D014980 2.6e-52 209.5 165 74.5
Gorai.004G236600 Gossypium raimondii HOM05D001444 ORTHO05D003766 2.6e-52 209.5 204 58.8
Nn3g21688 Nelumbo nucifera HOM05D001444 ORTHO05D003766 2.6e-52 209.5 214 56.5
TAR633G2402 Trochodendron aralioides HOM05D001444 ORTHO05D003766 2.6e-52 209.5 204 58.3
Duzib177G0746 Durio zibethinus HOM05D001444 ORTHO05D003766 3.4e-52 209.1 216 57.4
Gohir.D08G222800 Gossypium hirsutum HOM05D001444 ORTHO05D003766 3.4e-52 209.1 204 58.8
Potri.013G008900 Populus trichocarpa HOM05D001444 ORTHO05D003766 3.4e-52 209.1 214 57.0
Prupe.2G038600 Prunus persica HOM05D001444 ORTHO05D003766 3.4e-52 209.1 214 56.5
MD02G1284000 Malus domestica HOM05D001444 ORTHO05D003766 4.5e-52 208.8 214 56.1
Psat0s3400g0080 Pisum sativum HOM05D001444 ORTHO05D003766 4.5e-52 208.8 214 56.1
TWI56G1076 Tripterygium wilfordii HOM05D001444 ORTHO05D003766 4.5e-52 208.8 214 56.5
TAR636G1039 Trochodendron aralioides HOM05D001444 ORTHO05D003766 4.5e-52 208.8 214 56.5
ATR0796G182 Amborella trichopoda HOM05D001444 ORTHO05D003766 5.9e-52 208.4 214 56.1
Ca_10170_v3 Cicer arietinum L. HOM05D001444 ORTHO05D003766 5.9e-52 208.4 214 55.6
Duzib128G0547 Durio zibethinus HOM05D001444 ORTHO05D003766 5.9e-52 208.4 216 56.9
Gohir.A08G205900 Gossypium hirsutum HOM05D001444 ORTHO05D003766 5.9e-52 208.4 204 58.8
Potri.005G017600 Populus trichocarpa HOM05D001444 ORTHO05D003766 5.9e-52 208.4 214 56.5
MD12G1206100 Malus domestica HOM05D001444 ORTHO05D003766 7.7e-52 208.0 214 56.1
Nn4g25600 Nelumbo nucifera HOM05D001444 ORTHO05D003766 7.7e-52 208.0 214 56.5
Cc02_g35000 Coffea canephora HOM05D001444 ORTHO05D003766 1.3e-51 207.2 214 55.1
MD04G1193200 Malus domestica HOM05D001444 ORTHO05D003766 1.3e-51 207.2 214 56.1
CsaV3_2G007040 Cucumis sativus L. HOM05D001444 ORTHO05D003766 1.7e-51 206.8 214 55.1
Phvul.007G201200 Phaseolus vulgaris HOM05D001444 ORTHO05D003766 1.7e-51 206.8 204 57.8
arahy.Tifrunner.gnm1.ann1.06RU3W Arachis hypogaea HOM05D001444 ORTHO05D003766 2.2e-51 206.5 214 55.6
arahy.Tifrunner.gnm1.ann1.UJ98VB Arachis hypogaea HOM05D001444 ORTHO05D003766 2.2e-51 206.5 214 55.6
CSS0031861 Camellia sinensis var. sinensis HOM05D001444 ORTHO05D003766 2.2e-51 206.5 204 58.3
Cpa.g.sc48.159 Carica papaya HOM05D001444 ORTHO05D003766 2.2e-51 206.5 204 58.3
FAN05G3889 Fragaria x ananassa HOM05D001444 ORTHO05D003766 2.2e-51 206.5 214 56.5
FvH4_6g07420 Fragaria vesca HOM05D001444 ORTHO05D003766 2.9e-51 206.1 214 56.1
FAN02G3316 Fragaria x ananassa HOM05D001444 ORTHO05D003766 2.9e-51 206.1 214 56.1
FAN14G2853 Fragaria x ananassa HOM05D001444 ORTHO05D003766 2.9e-51 206.1 214 56.1
CDE05G1119 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 3.8e-51 205.7 214 55.1
Prupe.6G313300 Prunus persica HOM05D001444 ORTHO05D003766 6.5e-51 204.9 214 55.1
CDE11G0937 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 8.5e-51 204.5 214 54.7
FAN09G2106 Fragaria x ananassa HOM05D001444 ORTHO05D003766 8.5e-51 204.5 214 56.1
Lj5A334G51 Lonicera japonica HOM05D001444 ORTHO05D003766 8.5e-51 204.5 202 59.4
Sed0006327 Sechium edule HOM05D001444 ORTHO05D003766 1.1e-50 204.1 214 55.1
Zm00001eb331350 Zea mays HOM05D001444 ORTHO05D003766 1.1e-50 204.1 204 56.9
HanXRQChr16g0513821 Helianthus annuus HOM05D001444 ORTHO05D003766 1.4e-50 203.8 204 57.8
Actinidia01682 Actinidia chinensis HOM05D001444 ORTHO05D003766 1.9e-50 203.4 204 57.4
MELO3C004189.2 Cucumis melo HOM05D001444 ORTHO05D003766 1.9e-50 203.4 213 55.9
Duzib106G0804 Durio zibethinus HOM05D001444 ORTHO05D003766 1.9e-50 203.4 230 54.8
PGR083G0370 Punica granatum HOM05D001444 ORTHO05D003766 1.9e-50 203.4 204 57.4
QL03p013621 Quercus lobata HOM05D001444 ORTHO05D003766 1.9e-50 203.4 240 51.2
Lalb_Chr02g0147821 Lupinus albus HOM05D001444 ORTHO05D003766 5.5e-50 201.8 214 54.7
Dinv30892 Davidia involucrata HOM05D001444 ORTHO05D003766 7.2e-50 201.4 204 57.8
Lalb_Chr21g0310321 Lupinus albus HOM05D001444 ORTHO05D003766 1.2e-49 200.7 214 54.7
COL.COLO4_05554 Corchorus olitorius HOM05D001444 ORTHO05D003766 2.7e-49 199.5 210 57.1
Rhsim05G0131900 Rhododendron simsii HOM05D001444 ORTHO05D003766 3.6e-49 199.1 219 54.3
Zm00001eb111810 Zea mays HOM05D001444 ORTHO05D003766 4.7e-49 198.7 204 56.9
HPP92_027566 Vanilla planifolia HOM05D001444 ORTHO05D003766 1.4e-48 197.2 214 53.7
Aqoxy7G03321 Aquilegia oxysepala HOM05D001444 ORTHO05D003766 1.8e-48 196.8 201 57.2
Lsat_1_v5_gn_5_103920 Lactuca sativa HOM05D001444 ORTHO05D003766 1.8e-48 196.8 204 56.4
Lj5g0020416 Lotus japonicus HOM05D001444 ORTHO05D003766 3.0e-48 196.1 214 52.8
Oeu053708.1 Olea europaea HOM05D001444 ORTHO05D003766 3.9e-48 195.7 201 56.7
THA.LOC104820100 Tarenaya hassleriana HOM05D001444 ORTHO05D003766 6.7e-48 194.9 222 54.1
Eucgr.L00266 Eucalyptus grandis HOM05D001444 ORTHO05D003766 8.8e-48 194.5 204 55.9
RcHm_v2.0_Chr3g0457021 Rosa chinensis HOM05D001444 ORTHO05D003766 2.4e-45 186.4 214 53.3
SalBow2G0724 Salvia bowleyana HOM05D001444 ORTHO05D003766 5.3e-45 185.3 273 44.0
AL3G16530 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 1.2e-44 184.1 212 51.4
Carub.0003s0515 Capsella rubella HOM05D001444 ORTHO05D003766 4.5e-44 182.2 204 52.9
vmacro19754 Vaccinium macrocarpon HOM05D001444 ORTHO05D003766 7.7e-44 181.4 269 44.2
Haze_04062 Corylus avellana HOM05D001444 ORTHO05D003766 6.5e-43 178.3 214 51.4
PSO063G2884 Papaver somniferum HOM05D001444 ORTHO05D003766 8.5e-43 177.9 198 53.0
PSO782G1742 Papaver somniferum HOM05D001444 ORTHO05D003766 8.5e-43 177.9 198 53.0
ECA234G1965 Erigeron canadensis HOM05D001444 ORTHO05D003766 1.1e-42 177.6 215 51.2
AT3G05790 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 1.5e-42 177.2 206 51.5
Thhalv10022093m.g Eutrema salsugineum HOM05D001444 ORTHO05D003766 2.5e-42 176.4 215 49.8
TAR365G0568 Trochodendron aralioides HOM05D001444 ORTHO05D003766 4.2e-42 175.6 210 50.0
BolC1t05667H Brassica oleracea HOM05D001444 ORTHO05D003766 2.1e-41 173.3 215 47.9
Dinv24440 Davidia involucrata HOM05D001444 ORTHO05D003766 2.1e-41 173.3 219 49.8
AUR62006755 Chenopodium quinoa HOM05D001444 ORTHO05D003766 4.7e-41 172.2 201 54.7
FAN03G3407 Fragaria x ananassa HOM05D001444 ORTHO05D003766 8.0e-41 171.4 214 47.2
FAN10G3276 Fragaria x ananassa HOM05D001444 ORTHO05D003766 6.7e-40 168.3 201 49.3
FvH4_7g03300 Fragaria vesca HOM05D001444 ORTHO05D003766 2.0e-39 166.8 201 48.3
FAN06G0007 Fragaria x ananassa HOM05D001444 ORTHO05D003766 2.0e-39 166.8 201 48.3
AUR62000399 Chenopodium quinoa HOM05D001444 ORTHO05D003766 8.2e-38 161.4 219 50.2
Atru.chr2.183 Acer truncatum HOM05D001444 ORTHO05D003766 1.4e-37 160.6 99 83.8
BraA01t04474Z Brassica rapa HOM05D001444 ORTHO05D003766 1.8e-37 160.2 224 44.2
RcHm_v2.0_Chr1g0325611 Rosa chinensis HOM05D001444 ORTHO05D003766 4.5e-36 155.6 205 46.3
BcaC09g47850 Brassica carinata HOM05D001444 ORTHO05D003766 1.7e-35 153.7 182 48.4
EL10Ac4g09446 Beta vulgaris HOM05D001444 ORTHO05D003766 3.8e-35 152.5 188 52.7
unitig_26.g9563 Utricularia gibba HOM05D001444 ORTHO05D003766 2.1e-33 146.7 178 51.1
Oeu064819.1 Olea europaea HOM05D001444 ORTHO05D003766 1.8e-32 143.7 174 51.7
Zm00001eb014570 Zea mays HOM05D001444 ORTHO05D003766 6.8e-32 141.7 185 48.1
SMO358G0399 Selaginella moellendorffii HOM05D001444 ORTHO05D003766 5.7e-31 138.7 206 43.7
AagrBONN_evm.TU.Sc2ySwM_228.1077 Anthoceros agrestis HOM05D001444 ORTHO05D003766 9.8e-31 137.9 240 37.5
Pp3c13_13900 Physcomitrium patens HOM05D001444 ORTHO05D003766 1.1e-29 134.4 202 40.6
CBR_g37235 Chara braunii HOM05D001444 ORTHO05D003766 5.9e-28 128.6 192 40.6
SHI18059 Sapria himalayana HOM05D001444 ORTHO05D003766 1.3e-27 127.5 169 45.6
HPP92_017244 Vanilla planifolia HOM05D001444 ORTHO05D003766 1.1e-26 124.4 152 51.3
C09p52300 Brassica napus HOM05D001444 ORTHO05D012314 1.6e-25 120.6 69 94.2
Ah.03g134540 Amaranthus hybridus HOM05D001444 ORTHO05D003766 4.7e-25 119.0 183 45.4
QL03p013575 Quercus lobata HOM05D001444 ORTHO05D003766 1.5e-23 114.0 208 39.9
EL10Ac1g02045 Beta vulgaris HOM05D000232 ORTHO05D000145 2.0e-23 113.6 68 77.9
MD07G1050000 Malus domestica HOM05D001444 ORTHO05D003766 2.0e-23 113.6 231 37.2
Mapoly0002s0303 Marchantia polymorpha HOM05D001444 ORTHO05D003766 3.4e-23 112.8 170 41.8
Gohir.D09G069933 Gossypium hirsutum HOM05D001444 ORTHO05D012314 2.8e-22 109.8 65 87.7
Gorai.006G084200 Gossypium raimondii HOM05D001444 ORTHO05D012314 2.8e-22 109.8 65 87.7
AT3G05780 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 4.9e-22 109.0 185 40.5
CAN.G2431.1 Capsicum annuum HOM05D001444 ORTHO05D003766 6.3e-22 108.6 93 61.3
Atru.chr2.221 Acer truncatum HOM05D001444 ORTHO05D003766 1.1e-21 107.8 107 59.8
A06p02720 Brassica napus HOM05D001444 ORTHO05D003766 3.1e-21 106.3 142 45.1
BraA06t23480Z Brassica rapa HOM05D001444 ORTHO05D003766 3.1e-21 106.3 142 45.1
Actinidia01509 Actinidia chinensis HOM05D001444 ORTHO05D003766 9.1e-21 104.8 67 82.1
AL3G16520 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 9.1e-21 104.8 178 39.9
CARHR080240 Cardamine hirsuta HOM05D001444 ORTHO05D003766 3.5e-20 102.8 117 49.6
SEGI_11007 Sequoiadendron giganteum HOM05D001444 ORTHO05D003766 5.9e-20 102.1 62 79.0
BcaC08g43275 Brassica carinata HOM05D001444 ORTHO05D003766 7.7e-20 101.7 142 43.7
C06p06260 Brassica napus HOM05D001444 ORTHO05D003766 7.7e-20 101.7 142 43.7
BolC6t35735H Brassica oleracea HOM05D001444 ORTHO05D003766 7.7e-20 101.7 142 43.7
AL845U10010 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 2.3e-19 100.1 108 52.8
Peaxi162Scf01208g00007 Petunia axillaris HOM05D001444 ORTHO05D003766 5.0e-19 99.0 93 55.9
Nitab4.5_0003894g0030 Nicotiana tabacum HOM05D001444 ORTHO05D003766 2.5e-18 96.7 93 55.9
Cre06.g281350 Chlamydomonas reinhardtii HOM05D001444 ORTHO05D003766 9.5e-18 94.7 197 35.5
VMungo0251G2141 Vigna mungo HOM05D001444 ORTHO05D012314 9.5e-18 94.7 65 78.5
MCO16G463 Micromonas commoda HOM05D001444 ORTHO05D003766 1.0e-16 91.3 175 36.6
AL881U10010 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 5.2e-16 89.0 68 67.6
BcaB07g33548 Brassica carinata HOM05D001444 ORTHO05D003766 8.9e-16 88.2 187 36.9
A06p02730 Brassica napus HOM05D001444 ORTHO05D003766 8.9e-16 88.2 148 38.5
Glyma.06G236800 Glycine max HOM05D001444 ORTHO05D003766 2.0e-15 87.0 51 86.3
Nitab4.5_0000155g0080 Nicotiana tabacum HOM05D001444 ORTHO05D014980 4.4e-15 85.9 66 74.2
Nitab4.5_0003894g0050 Nicotiana tabacum HOM05D001444 ORTHO05D012314 1.7e-14 84.0 52 86.5
BcaC07g39063 Brassica carinata HOM05D010266 ORTHO05D014980 1.8e-13 80.5 52 78.8
AL5G41580 Arabidopsis lyrata HOM05D001444 ORTHO05D012314 7.8e-12 75.1 47 85.1
C06p07320 Brassica napus HOM05D010266 ORTHO05D032946 1.7e-11 73.9 45 84.4
BolC6t35824H Brassica oleracea HOM05D010266 ORTHO05D032946 1.7e-11 73.9 45 84.4
BolC6t35734H Brassica oleracea HOM05D001444 ORTHO05D003766 3.0e-11 73.2 142 39.4
QL03p013604 Quercus lobata HOM05D001444 ORTHO05D003766 1.9e-10 70.5 123 41.5
QL03p039924 Quercus lobata HOM05D001444 ORTHO05D003766 3.3e-10 69.7 68 57.4
Gohir.D05G286400 Gossypium hirsutum HOM05D001444 ORTHO05D012314 1.5e-07 60.8 38 84.2
Haze_26118 Corylus avellana HOM05D001444 ORTHO05D003766 2.0e-07 60.5 67 49.3
Gorai.007G272600 Gossypium raimondii HOM05D000282 ORTHO05D012314 5.8e-07 58.9 38 81.6
Gohir.D08G105000 Gossypium hirsutum HOM05D000282 ORTHO05D012314 2.9e-06 56.6 38 78.9


User provided reference genes

Program Settings