Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21049 Brassica carinata HOM05D000971 ORTHO05D015474 4.9e-76 287.7 147 100.0
C09p36240 Brassica napus HOM05D000971 ORTHO05D000901 4.9e-76 287.7 147 100.0
BolC3t18979H Brassica oleracea HOM05D000971 ORTHO05D015474 3.3e-72 275.0 147 95.9
BcaC01g02284 Brassica carinata HOM05D000971 ORTHO05D015474 1.3e-71 273.1 147 95.9
BcaC02g11459 Brassica carinata HOM05D000971 ORTHO05D000901 6.2e-71 270.8 147 94.6
C03p67050 Brassica napus HOM05D000971 ORTHO05D015474 5.3e-70 267.7 147 94.6
C04p15260 Brassica napus HOM05D000971 ORTHO05D015474 2.0e-69 265.8 147 92.5
BolC4t23097H Brassica oleracea HOM05D000971 ORTHO05D000901 2.0e-69 265.8 147 92.5
BcaB01g00535 Brassica carinata HOM05D000971 ORTHO05D000901 7.9e-58 227.3 153 82.4
Sp5g10940 Schrenkiella parvula HOM05D000971 ORTHO05D000901 3.7e-55 218.4 152 80.3
Thhalv10010403m.g Eutrema salsugineum HOM05D000971 ORTHO05D000901 1.9e-51 206.1 152 76.3
BcaC06g33041 Brassica carinata HOM05D000971 ORTHO05D000901 4.2e-51 204.9 155 76.8
C07p46270 Brassica napus HOM05D000971 ORTHO05D000901 8.8e-49 197.2 154 74.7
BolC9t56461H Brassica oleracea HOM05D000971 ORTHO05D000901 2.0e-48 196.1 103 100.0
BraA07t28787Z Brassica rapa HOM05D000971 ORTHO05D015474 2.2e-47 192.6 107 93.5
A03p02140 Brassica napus HOM05D000971 ORTHO05D015474 6.3e-47 191.0 107 92.5
BraA01t03946Z Brassica rapa HOM05D000971 ORTHO05D015474 1.1e-46 190.3 107 92.5
C01p09490 Brassica napus HOM05D000971 ORTHO05D015474 9.1e-46 187.2 107 90.7
C01p29200 Brassica napus HOM05D000971 ORTHO05D000901 2.9e-44 182.2 191 60.7
BcaNung00391 Brassica carinata HOM05D000971 ORTHO05D000901 1.4e-43 179.9 155 67.1
Carub.0005s1765 Capsella rubella HOM05D000971 ORTHO05D000901 5.5e-43 177.9 147 69.4
BolC1t02849H Brassica oleracea HOM05D000971 ORTHO05D000901 7.2e-43 177.6 192 60.4
AT3G51280 Arabidopsis thaliana HOM05D000971 ORTHO05D000901 9.4e-43 177.2 149 71.8
A03p48240 Brassica napus HOM05D000971 ORTHO05D000901 4.7e-42 174.9 153 69.3
AL5G31700 Arabidopsis lyrata HOM05D000971 ORTHO05D000901 1.0e-41 173.7 150 68.7
BolC8t50269H Brassica oleracea HOM05D000971 ORTHO05D000901 8.2e-39 164.1 131 70.2
BcaC07g37974 Brassica carinata HOM05D000971 ORTHO05D015474 1.4e-38 163.3 87 94.3
BcaC09g50091 Brassica carinata HOM05D000971 ORTHO05D000901 1.2e-37 160.2 187 56.1
CARHR160860 Cardamine hirsuta HOM05D000971 ORTHO05D000901 4.5e-37 158.3 143 65.7
BcaNung06396 Brassica carinata HOM05D000441 ORTHO05D000901 5.0e-36 154.8 187 56.1
BcaB05g25187 Brassica carinata HOM05D000971 ORTHO05D015474 1.5e-32 143.3 147 59.2
C08p26560 Brassica napus HOM05D000971 ORTHO05D000901 1.2e-24 117.1 85 70.6
A09p44320 Brassica napus HOM05D000971 ORTHO05D000901 1.7e-23 113.2 78 80.8
BraA09t39893Z Brassica rapa HOM05D000971 ORTHO05D000901 1.7e-23 113.2 78 80.8
BcaC06g33039 Brassica carinata HOM05D000441 ORTHO05D000340 3.7e-23 112.1 114 62.3
CARHR281610 Cardamine hirsuta HOM05D000971 ORTHO05D000901 2.8e-18 95.9 178 41.6
Dinv33651 Davidia involucrata HOM05D000971 ORTHO05D000901 2.3e-17 92.8 173 43.4
Manes.01G147400 Manihot esculenta HOM05D000971 ORTHO05D000901 2.0e-16 89.7 194 35.1
Gohir.D11G180900 Gossypium hirsutum HOM05D000971 ORTHO05D000901 2.6e-16 89.4 195 40.0
BcaB02g07157 Brassica carinata HOM05D000971 ORTHO05D015474 4.4e-16 88.6 50 86.0
ECA246G4778 Erigeron canadensis HOM05D000971 ORTHO05D000901 4.4e-16 88.6 182 39.6
Gorai.007G192700 Gossypium raimondii HOM05D000971 ORTHO05D000901 5.7e-16 88.2 195 39.5
Gohir.A11G173700 Gossypium hirsutum HOM05D000971 ORTHO05D000901 2.8e-15 85.9 195 38.5
Gohir.A11G173800 Gossypium hirsutum HOM05D000971 ORTHO05D000901 3.7e-15 85.5 195 37.9
HanXRQChr16g0531531 Helianthus annuus HOM05D000971 ORTHO05D000901 4.9e-15 85.1 183 36.6
Gohir.D11G180800 Gossypium hirsutum HOM05D000971 ORTHO05D000901 8.3e-15 84.3 195 38.5
Gorai.007G192600 Gossypium raimondii HOM05D000971 ORTHO05D000901 1.1e-14 84.0 195 38.5
Psat4g101920 Pisum sativum HOM05D000971 ORTHO05D000901 1.1e-14 84.0 183 35.5
SGA_v2.0_scaffold5G02795 Striga asiatica HOM05D000971 ORTHO05D000901 1.1e-14 84.0 180 38.9
Eucgr.J02462 Eucalyptus grandis HOM05D000971 ORTHO05D000901 1.8e-14 83.2 207 36.7
MSTRG.2725 Avicennia marina HOM05D000971 ORTHO05D000901 3.1e-14 82.4 177 39.0
Duzib264G0774 Durio zibethinus HOM05D000971 ORTHO05D000901 3.1e-14 82.4 194 37.6
Medtr8g075260 Medicago truncatula HOM05D000971 ORTHO05D000901 3.1e-14 82.4 196 35.2
Cc07_g11010 Coffea canephora HOM05D000971 ORTHO05D000901 4.1e-14 82.0 195 37.9
Dinv40112 Davidia involucrata HOM05D000971 ORTHO05D000901 4.1e-14 82.0 201 37.8
PGSC0003DMG400003580 Solanum tuberosum HOM05D000971 ORTHO05D000901 4.1e-14 82.0 193 37.8
Thecc.01G015200 Theobroma cacao HOM05D000971 ORTHO05D000901 5.4e-14 81.6 206 36.9
Aa31LG1G14630 Aethionema arabicum HOM05D000971 ORTHO05D000901 7.0e-14 81.3 146 43.2
Sopen02g028420 Solanum pennellii HOM05D000096 ORTHO05D000901 7.0e-14 81.3 193 36.3
Oeu036569.1 Olea europaea HOM05D000971 ORTHO05D000901 9.2e-14 80.9 192 41.7
Potri.007G056500 Populus trichocarpa HOM05D000971 ORTHO05D000901 9.2e-14 80.9 206 35.4
Hund14059 Selenicereus undatus HOM05D000971 ORTHO05D000901 9.2e-14 80.9 202 34.7
TAR628G1426 Trochodendron aralioides HOM05D000971 ORTHO05D000901 9.2e-14 80.9 184 38.6
Solyc02g083640.4 Solanum lycopersicum HOM05D000971 ORTHO05D000901 1.2e-13 80.5 193 36.8
CiPaw.07G060700 Carya illinoinensis HOM05D000971 ORTHO05D000901 2.0e-13 79.7 199 34.7
Ca_03625_v3 Cicer arietinum L. HOM05D000971 ORTHO05D000901 2.0e-13 79.7 191 34.6
Rhsim10G0209500 Rhododendron simsii HOM05D000971 ORTHO05D000901 2.7e-13 79.3 210 34.3
THA.LOC104821336 Tarenaya hassleriana HOM05D000971 ORTHO05D000901 2.7e-13 79.3 144 43.1
Nitab4.5_0004340g0010 Nicotiana tabacum HOM05D000971 ORTHO05D000901 3.5e-13 79.0 191 35.6
Oeu014560.1 Olea europaea HOM05D000971 ORTHO05D000901 3.5e-13 79.0 189 38.6
Peaxi162Scf00328g00620 Petunia axillaris HOM05D000971 ORTHO05D000901 3.5e-13 79.0 190 38.4
Sabra07G0048300 Salix brachista HOM05D000971 ORTHO05D000901 3.5e-13 79.0 198 35.4
COL.COLO4_22456 Corchorus olitorius HOM05D000971 ORTHO05D000901 5.9e-13 78.2 203 36.5
Sed0015718 Sechium edule HOM05D000971 ORTHO05D000901 5.9e-13 78.2 217 35.9
TPR.G19496 Trifolium pratense HOM05D000971 ORTHO05D000901 5.9e-13 78.2 198 32.3
TAR376G0024 Trochodendron aralioides HOM05D000971 ORTHO05D000901 5.9e-13 78.2 186 39.2
Duzib147G0877 Durio zibethinus HOM05D000971 ORTHO05D000901 7.8e-13 77.8 202 34.7
Ah.03g149060 Amaranthus hybridus HOM05D000971 ORTHO05D000901 1.0e-12 77.4 187 38.0
Aqoxy6G02194 Aquilegia oxysepala HOM05D000971 ORTHO05D000901 1.0e-12 77.4 161 38.5
CiPaw.08G130100 Carya illinoinensis HOM05D000971 ORTHO05D000901 1.0e-12 77.4 192 35.4
Hma1.2p1_0869F.1_g230730 Hydrangea macrophylla HOM05D000971 ORTHO05D000901 1.7e-12 76.6 187 36.4
vmacro22148 Vaccinium macrocarpon HOM05D000971 ORTHO05D000901 1.7e-12 76.6 212 35.8
Lj2A480T47 Lonicera japonica HOM05D000971 ORTHO05D000901 3.8e-12 75.5 196 38.3
Nitab4.5_0000438g0190 Nicotiana tabacum HOM05D000971 ORTHO05D000901 3.8e-12 75.5 180 35.6
AUR62003347 Chenopodium quinoa HOM05D000971 ORTHO05D000901 5.0e-12 75.1 201 36.8
Sed0013645 Sechium edule HOM05D000971 ORTHO05D000901 5.0e-12 75.1 198 34.8
Nitab4.5_0003187g0080 Nicotiana tabacum HOM05D000971 ORTHO05D000901 1.1e-11 73.9 186 36.6
Lsat_1_v5_gn_3_72560 Lactuca sativa HOM05D000971 ORTHO05D000901 2.5e-11 72.8 192 35.9
Nitab4.5_0001892g0040 Nicotiana tabacum HOM05D000971 ORTHO05D000901 2.5e-11 72.8 186 36.6
Lj4g0022115 Lotus japonicus HOM05D000971 ORTHO05D000901 3.3e-11 72.4 195 33.3
Potri.005G112100 Populus trichocarpa HOM05D000971 ORTHO05D000901 3.3e-11 72.4 204 34.3
TWI73G1250 Tripterygium wilfordii HOM05D000971 ORTHO05D000901 3.3e-11 72.4 192 35.9
PSO675G6524 Papaver somniferum HOM05D000971 ORTHO05D000901 4.3e-11 72.0 186 33.3
CAN.G1274.25 Capsicum annuum HOM05D000971 ORTHO05D000901 5.6e-11 71.6 193 36.3
Cpa.g.sc6.281 Carica papaya HOM05D000971 ORTHO05D000901 9.5e-11 70.9 208 32.7
Nn5g30761 Nelumbo nucifera HOM05D000971 ORTHO05D000901 9.5e-11 70.9 206 32.0
EL10Ac6g15496 Beta vulgaris HOM05D000971 ORTHO05D000901 2.1e-10 69.7 202 33.7
Sabra05G0091900 Salix brachista HOM05D000971 ORTHO05D000901 2.1e-10 69.7 202 34.2
Manes.02G105900 Manihot esculenta HOM05D000971 ORTHO05D000901 2.8e-10 69.3 199 31.7
Phvul.003G264900 Phaseolus vulgaris HOM05D000971 ORTHO05D000901 6.1e-10 68.2 210 31.0
ClCG01G020430 Citrullus lanatus HOM05D000971 ORTHO05D000901 1.4e-09 67.0 210 32.4
MELO3C007922.2 Cucumis melo HOM05D000971 ORTHO05D000901 1.4e-09 67.0 221 30.8
PSO541G4624 Papaver somniferum HOM05D000971 ORTHO05D000901 1.4e-09 67.0 185 31.4
TWI53G0653 Tripterygium wilfordii HOM05D000971 ORTHO05D000901 1.4e-09 67.0 186 36.6
CsaV3_6G047310 Cucumis sativus L. HOM05D000971 ORTHO05D000901 2.3e-09 66.2 219 31.5
unitig_899.g14719 Utricularia gibba HOM05D000971 ORTHO05D000901 2.3e-09 66.2 168 32.7
Actinidia36754 Actinidia chinensis HOM05D000971 ORTHO05D000901 4.0e-09 65.5 166 33.1
Lalb_Chr16g0391371 Lupinus albus HOM05D000971 ORTHO05D000901 5.2e-09 65.1 201 31.8
MD15G1243100 Malus domestica HOM05D000971 ORTHO05D000901 6.8e-09 64.7 203 34.0
CANSAT25G3482 Cannabis sativa HOM05D000971 ORTHO05D000901 1.2e-08 63.9 215 30.7
VMungo0251G1809 Vigna mungo HOM05D000971 ORTHO05D000901 2.6e-08 62.8 209 29.7
PGR102G0073 Punica granatum HOM05D000971 ORTHO05D000901 4.4e-08 62.0 204 29.9
Atru.chr3.849 Acer truncatum HOM05D000971 ORTHO05D000901 5.8e-08 61.6 209 32.1
MD02G1127900 Malus domestica HOM05D000971 ORTHO05D000901 5.8e-08 61.6 205 34.6
SalBow3G4207 Salvia bowleyana HOM05D000971 ORTHO05D000901 1.7e-07 60.1 107 43.0
arahy.Tifrunner.gnm1.ann1.LB653W Arachis hypogaea HOM05D000971 ORTHO05D000901 2.9e-07 59.3 220 29.5
arahy.Tifrunner.gnm1.ann1.LNY1ZH Arachis hypogaea HOM05D000971 ORTHO05D000901 2.9e-07 59.3 220 29.5
Cfa006996 Carpinus fangiana HOM05D000971 ORTHO05D000901 2.9e-07 59.3 189 31.2
Haze_03736 Corylus avellana HOM05D000971 ORTHO05D000901 2.9e-07 59.3 189 30.7
GSVIVG01018744001 Vitis vinifera HOM05D000971 ORTHO05D000901 2.9e-07 59.3 165 33.3
ATR0712G141 Amborella trichopoda HOM05D000971 ORTHO05D000901 3.7e-07 58.9 142 32.4
QL06p051036 Quercus lobata HOM05D000971 ORTHO05D000901 3.7e-07 58.9 201 32.8
FAN23G0535 Fragaria x ananassa HOM05D000971 ORTHO05D000901 6.4e-07 58.2 205 31.7
FAN26G3068 Fragaria x ananassa HOM05D000971 ORTHO05D000901 6.4e-07 58.2 202 31.7
FAN19G2392 Fragaria x ananassa HOM05D000971 ORTHO05D000901 2.4e-06 56.2 213 31.5
MBI09_g35942_MAGBIO Magnolia biondii HOM05D000971 ORTHO05D000901 2.4e-06 56.2 201 32.8
DCAR_010142 Daucus carota HOM05D000971 ORTHO05D000901 4.1e-06 55.5 174 35.6
Prupe.7G171000 Prunus persica HOM05D000971 ORTHO05D000901 4.1e-06 55.5 208 30.8
FAN28G0109 Fragaria x ananassa HOM05D000971 ORTHO05D000901 7.0e-06 54.7 211 31.3
RcHm_v2.0_Chr2g0099121 Rosa chinensis HOM05D000971 ORTHO05D000901 7.0e-06 54.7 203 32.5


User provided reference genes

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