Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 8.2e-88 327.0 164 100.0
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 8.5e-85 317.0 164 97.6
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 3.7e-80 301.6 193 82.9
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 8.2e-80 300.4 164 92.7
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 3.6e-75 285.0 193 78.8
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 1.0e-74 283.5 164 87.8
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 1.0e-74 283.5 164 87.8
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 3.0e-74 282.0 164 87.2
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 3.0e-74 282.0 164 87.2
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 3.9e-74 281.6 161 88.2
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 3.9e-74 281.6 164 87.8
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 8.8e-74 280.4 164 86.6
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 8.8e-74 280.4 164 86.6
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.1e-73 280.0 164 86.6
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 4.4e-73 278.1 165 87.3
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 1.4e-71 273.1 164 84.8
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.4e-71 273.1 164 86.6
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.9e-68 262.7 169 79.3
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 2.7e-67 258.8 158 86.1
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 6.5e-61 237.7 161 72.0
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 8.5e-61 237.3 164 71.3
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 8.5e-61 237.3 164 71.3
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 3.2e-60 235.3 159 71.7
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 3.2e-60 235.3 159 71.7
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 5.5e-60 234.6 164 70.7
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.2e-59 233.4 164 72.0
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 4.7e-59 231.5 149 76.5
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 6.1e-59 231.1 149 76.5
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 2.3e-58 229.2 157 72.6
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 3.0e-58 228.8 170 70.0
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 6.3e-56 221.1 162 71.0
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 7.0e-55 217.6 161 69.6
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 7.0e-55 217.6 161 70.2
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 2.0e-54 216.1 156 68.6
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 2.0e-54 216.1 161 71.4
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 5.9e-54 214.5 161 68.9
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 5.9e-54 214.5 156 70.5
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 5.9e-54 214.5 154 70.8
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 5.9e-54 214.5 157 67.5
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.0e-53 213.8 161 67.1
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 1.3e-53 213.4 142 75.4
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.7e-53 213.0 161 68.3
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 2.3e-53 212.6 154 67.5
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 2.9e-53 212.2 161 65.8
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 2.9e-53 212.2 156 69.2
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 5.0e-53 211.5 161 67.7
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 6.5e-53 211.1 154 68.8
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 8.6e-53 210.7 147 72.8
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 8.6e-53 210.7 156 68.6
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.5e-52 209.9 138 76.1
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 1.9e-52 209.5 159 67.3
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 2.5e-52 209.1 145 71.7
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 2.5e-52 209.1 160 68.1
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 2.5e-52 209.1 143 71.3
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 2.5e-52 209.1 159 67.3
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 3.3e-52 208.8 156 67.9
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 3.3e-52 208.8 148 69.6
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 3.3e-52 208.8 149 71.8
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 4.2e-52 208.4 159 67.9
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 4.2e-52 208.4 159 67.3
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 7.2e-52 207.6 162 67.9
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 7.2e-52 207.6 161 67.1
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 7.2e-52 207.6 144 72.9
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 7.2e-52 207.6 157 66.2
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 7.2e-52 207.6 161 65.8
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 1.2e-51 206.8 145 70.3
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 1.6e-51 206.5 161 64.6
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 2.1e-51 206.1 162 67.3
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 2.1e-51 206.1 155 66.5
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 3.6e-51 205.3 162 66.0
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 4.7e-51 204.9 147 70.7
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 1.4e-50 203.4 161 64.0
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 1.8e-50 203.0 142 70.4
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 1.8e-50 203.0 181 60.2
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.8e-50 203.0 139 73.4
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 2.3e-50 202.6 150 70.0
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 2.3e-50 202.6 149 68.5
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 3.0e-50 202.2 164 64.0
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 4.0e-50 201.8 164 63.4
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 4.0e-50 201.8 154 66.9
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 4.0e-50 201.8 139 73.4
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 4.0e-50 201.8 159 64.8
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 6.8e-50 201.1 149 69.1
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 6.8e-50 201.1 156 66.0
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 8.9e-50 200.7 164 63.4
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 8.9e-50 200.7 156 64.7
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 8.9e-50 200.7 139 72.7
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.2e-49 200.3 156 67.9
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 1.5e-49 199.9 161 63.4
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 2.0e-49 199.5 140 69.3
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.0e-49 199.5 164 62.8
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 2.0e-49 199.5 147 67.3
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 3.4e-49 198.7 134 73.1
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 3.4e-49 198.7 139 72.7
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 7.5e-49 197.6 139 70.5
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.7e-48 196.4 156 65.4
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 1.7e-48 196.4 150 64.0
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 2.2e-48 196.1 161 62.1
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.8e-48 195.7 139 69.8
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.8e-48 195.7 139 69.8
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 2.8e-48 195.7 139 69.8
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 2.8e-48 195.7 161 59.6
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 4.9e-48 194.9 149 65.1
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 4.9e-48 194.9 147 65.3
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 4.9e-48 194.9 158 63.9
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 6.3e-48 194.5 150 66.0
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 6.3e-48 194.5 156 63.5
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.4e-47 193.4 150 65.3
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 2.4e-47 192.6 139 70.5
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 2.4e-47 192.6 161 62.1
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 9.2e-47 190.7 165 61.8
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 9.2e-47 190.7 134 70.1
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 3.5e-46 188.7 133 69.9
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 4.5e-46 188.3 150 68.0
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 1.0e-45 187.2 160 63.8
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 2.3e-45 186.0 156 63.5
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 2.3e-45 186.0 155 59.4
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 8.6e-45 184.1 147 62.6
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 1.1e-44 183.7 150 60.7
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 1.9e-44 183.0 142 65.5
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 1.9e-44 183.0 134 65.7
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 3.3e-44 182.2 206 51.9
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 4.3e-44 181.8 110 81.8
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 7.3e-44 181.0 156 62.8
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 7.3e-44 181.0 150 58.7
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 1.6e-43 179.9 110 81.8
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 4.7e-43 178.3 110 80.0
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 4.7e-43 178.3 152 61.8
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 8.0e-43 177.6 159 59.1
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.4e-42 176.8 141 63.8
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.4e-42 176.8 141 63.8
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.8e-42 176.4 141 63.8
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 4.4e-41 171.8 109 79.8
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 2.9e-40 169.1 111 76.6
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 4.9e-40 168.3 136 62.5
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 2.4e-39 166.0 110 72.7
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 7.0e-39 164.5 109 75.2
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 2.0e-38 162.9 110 72.7
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 2.3e-37 159.5 130 63.8
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 3.0e-37 159.1 135 63.7
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 3.0e-37 159.1 122 67.2
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 5.0e-37 158.3 140 57.1
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 2.5e-36 156.0 109 71.6
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 2.5e-36 156.0 135 56.3
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 2.8e-35 152.5 125 62.4
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 8.0e-35 151.0 130 56.9
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.4e-34 150.2 135 53.3
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 8.9e-34 147.5 105 67.6
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 9.8e-33 144.1 135 54.8
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.3e-32 143.7 145 49.0
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 5.4e-31 138.3 76 92.1
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 1.6e-27 126.7 116 58.6
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 1.4e-26 123.6 144 45.1
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 2.3e-26 122.9 137 47.4
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 6.4e-24 114.8 93 59.1
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 8.6e-21 104.4 135 46.7
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.1e-20 104.0 108 53.7
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 1.3e-16 90.5 86 55.8
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.4e-15 87.0 89 47.2
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 9.0e-10 67.8 44 72.7
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 4.9e-08 62.0 46 69.6
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 4.9e-08 62.0 46 69.6
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 3.2e-07 59.3 47 66.0
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 4.2e-07 58.9 46 65.2


User provided reference genes

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