Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20869 Brassica carinata HOM05D006764 ORTHO05D008516 8.3e-185 650.2 324 100.0
BraA09t38619Z Brassica rapa HOM05D006764 ORTHO05D008516 4.7e-180 634.4 325 97.8
BcaB01g01263 Brassica carinata HOM05D006764 ORTHO05D008516 9.3e-168 593.6 324 91.7
A09p30490 Brassica napus HOM05D006764 ORTHO05D008516 1.5e-165 586.3 331 90.3
AL6G41260 Arabidopsis lyrata HOM05D006764 ORTHO05D008516 7.1e-152 540.8 316 84.8
AT4G06676 Arabidopsis thaliana HOM05D006764 ORTHO05D008516 1.4e-147 526.6 316 83.5
CARHR260060 Cardamine hirsuta HOM05D006764 ORTHO05D008516 2.4e-147 525.8 316 82.9
Thhalv10028801m.g Eutrema salsugineum HOM05D006764 ORTHO05D008516 1.7e-145 519.6 324 82.1
Carub.0006s2639 Capsella rubella HOM05D006764 ORTHO05D008516 1.9e-144 516.2 327 80.1
BolC9t56687H Brassica oleracea HOM05D006764 ORTHO05D008516 1.0e-142 510.4 250 100.0
C09p38380 Brassica napus HOM05D006764 ORTHO05D008516 7.7e-138 494.2 241 100.0
Sp6g10710 Schrenkiella parvula HOM05D006764 ORTHO05D008516 1.3e-137 493.4 324 78.1
THA.LOC104807147 Tarenaya hassleriana HOM05D006764 ORTHO05D008516 6.7e-134 481.1 329 75.7
Aa31LG3G14080 Aethionema arabicum HOM05D006764 ORTHO05D008516 3.0e-126 455.7 344 71.5
CiPaw.05G051400 Carya illinoinensis HOM05D006764 ORTHO05D008516 1.5e-109 400.2 317 65.0
GSVIVG01023281001 Vitis vinifera HOM05D006764 ORTHO05D008516 3.4e-109 399.1 319 65.2
Potri.004G222300 Populus trichocarpa HOM05D006764 ORTHO05D008516 1.8e-107 393.3 316 64.9
MD08G1240100 Malus domestica HOM05D006764 ORTHO05D008516 2.4e-107 392.9 317 63.1
Prupe.1G576600 Prunus persica HOM05D006764 ORTHO05D008516 2.0e-106 389.8 316 64.2
Atru.chr6.751 Acer truncatum HOM05D006764 ORTHO05D008516 7.7e-106 387.9 322 63.7
ClCG11G013370 Citrullus lanatus HOM05D006764 ORTHO05D008516 7.7e-106 387.9 316 63.0
Dinv01845 Davidia involucrata HOM05D006764 ORTHO05D008516 1.3e-105 387.1 321 61.7
MD15G1432200 Malus domestica HOM05D006764 ORTHO05D008516 3.8e-105 385.6 317 63.1
Actinidia39013 Actinidia chinensis HOM05D006764 ORTHO05D008516 6.5e-105 384.8 315 63.2
QL02p099872 Quercus lobata HOM05D006764 ORTHO05D008516 1.1e-104 384.0 316 62.0
Manes.07G022500 Manihot esculenta HOM05D006764 ORTHO05D008516 1.9e-104 383.3 318 62.9
RcHm_v2.0_Chr7g0220831 Rosa chinensis HOM05D006764 ORTHO05D008516 7.2e-104 381.3 327 60.6
CsaV3_5G029880 Cucumis sativus L. HOM05D006764 ORTHO05D008516 1.2e-103 380.6 316 61.4
Gohir.D04G175300 Gossypium hirsutum HOM05D006764 ORTHO05D008516 6.1e-103 378.3 319 60.2
PGR042G2798 Punica granatum HOM05D006764 ORTHO05D008516 8.0e-103 377.9 309 61.2
MELO3C011834.2 Cucumis melo HOM05D006764 ORTHO05D008516 1.0e-102 377.5 316 60.8
Gorai.012G166600 Gossypium raimondii HOM05D006764 ORTHO05D008516 2.3e-102 376.3 319 59.9
TAR628G0031 Trochodendron aralioides HOM05D006764 ORTHO05D008516 2.3e-102 376.3 315 61.9
CSS0013576 Camellia sinensis var. sinensis HOM05D006764 ORTHO05D008516 3.0e-102 375.9 315 63.2
Lj6g0021331 Lotus japonicus HOM05D006764 ORTHO05D008516 6.8e-102 374.8 320 61.9
Psat1g221840 Pisum sativum HOM05D006764 ORTHO05D008516 6.8e-102 374.8 315 60.3
FvH4_5g28680 Fragaria vesca HOM05D006764 ORTHO05D008516 8.8e-102 374.4 322 61.2
Thecc.02G025400 Theobroma cacao HOM05D006764 ORTHO05D008516 1.2e-101 374.0 316 60.4
Gohir.A04G130100 Gossypium hirsutum HOM05D006764 ORTHO05D008516 2.0e-101 373.2 319 59.2
Cc02_g22970 Coffea canephora HOM05D006764 ORTHO05D008516 4.4e-101 372.1 321 58.9
Glyma.12G168200 Glycine max HOM05D006764 ORTHO05D008516 4.4e-101 372.1 320 60.6
Medtr2g006100 Medicago truncatula HOM05D006764 ORTHO05D008516 1.3e-100 370.5 315 60.0
Ciclev10001742m.g Citrus clementina HOM05D006764 ORTHO05D008516 6.3e-100 368.2 321 60.4
Glyma.16G004200 Glycine max HOM05D006764 ORTHO05D008516 6.3e-100 368.2 318 59.7
TPR.G2075 Trifolium pratense HOM05D006764 ORTHO05D008516 4.1e-99 365.5 315 60.0
arahy.Tifrunner.gnm1.ann1.0E87YT Arachis hypogaea HOM05D006764 ORTHO05D008516 7.0e-99 364.8 316 58.2
arahy.Tifrunner.gnm1.ann1.FMX4TW Arachis hypogaea HOM05D006764 ORTHO05D008516 9.1e-99 364.4 316 58.2
EL10Ac6g14065 Beta vulgaris HOM05D006764 ORTHO05D008516 9.1e-99 364.4 322 58.7
VMungo0540G1274 Vigna mungo HOM05D006764 ORTHO05D008516 2.0e-98 363.2 315 59.0
Phvul.006G217900 Phaseolus vulgaris HOM05D006764 ORTHO05D008516 4.5e-98 362.1 318 58.5
Nn5g27693 Nelumbo nucifera HOM05D006764 ORTHO05D008516 1.0e-97 360.9 314 59.9
Rhsim11G0125600 Rhododendron simsii HOM05D006764 ORTHO05D008516 1.3e-97 360.5 319 59.9
Eucgr.G00355 Eucalyptus grandis HOM05D006764 ORTHO05D008516 7.2e-96 354.8 317 57.7
PSO170G2545 Papaver somniferum HOM05D006764 ORTHO05D008516 1.2e-95 354.0 314 58.0
Sabra01G0168400 Salix brachista HOM05D006764 ORTHO05D008516 1.6e-95 353.6 316 60.1
Sopen10g013910 Solanum pennellii HOM05D006764 ORTHO05D008516 8.0e-95 351.3 316 57.3
Sc16g0001680 Simmondsia chinensis HOM05D006764 ORTHO05D008516 1.0e-94 350.9 313 59.1
CANSAT54G1059 Cannabis sativa HOM05D006764 ORTHO05D008516 3.4e-93 345.9 322 55.9
Solyc10g044910.2 Solanum lycopersicum HOM05D006764 ORTHO05D008516 3.4e-93 345.9 316 56.6
HanXRQChr10g0294521 Helianthus annuus HOM05D006764 ORTHO05D008516 9.8e-93 344.4 319 56.4
Lalb_Chr18g0061021 Lupinus albus HOM05D006764 ORTHO05D008516 1.3e-92 344.0 307 59.0
ECA234G3405 Erigeron canadensis HOM05D006764 ORTHO05D008516 3.7e-92 342.4 316 56.0
HPP92_009268 Vanilla planifolia HOM05D006764 ORTHO05D008516 5.9e-90 335.1 313 54.3
TWI59G0639 Tripterygium wilfordii HOM05D006764 ORTHO05D008516 2.9e-89 332.8 319 58.3
Aqoxy6G00131 Aquilegia oxysepala HOM05D006764 ORTHO05D008516 3.9e-89 332.4 326 51.8
Oeu023412.2 Olea europaea HOM05D006764 ORTHO05D008516 8.6e-89 331.3 270 62.6
unitig_748.g8283 Utricularia gibba HOM05D006764 ORTHO05D008516 3.1e-86 322.8 314 55.7
Nitab4.5_0000667g0120 Nicotiana tabacum HOM05D006764 ORTHO05D008516 4.0e-86 322.4 321 53.6
vmacro01728 Vaccinium macrocarpon HOM05D006764 ORTHO05D008516 5.2e-86 322.0 277 59.9
SGA_v2.0_scaffold304G47898 Striga asiatica HOM05D006764 ORTHO05D008516 1.5e-85 320.5 273 61.9
CAN.G1108.5 Capsicum annuum HOM05D006764 ORTHO05D008516 1.6e-79 300.4 269 56.9
AUR62042713 Chenopodium quinoa HOM05D006764 ORTHO05D008516 1.6e-79 300.4 317 52.1
MBI17_g21477_MAGBIO Magnolia biondii HOM05D006764 ORTHO05D008516 2.1e-79 300.1 304 52.3
Migut.B00802 Erythranthe guttata HOM05D006764 ORTHO05D008516 2.8e-79 299.7 316 54.1
ATR0709G017 Amborella trichopoda HOM05D006764 ORTHO05D008516 8.3e-76 288.1 304 50.0
FAN13G1303 Fragaria x ananassa HOM05D006764 ORTHO05D008516 1.1e-75 287.7 296 54.4
FAN18G3575 Fragaria x ananassa HOM05D006764 ORTHO05D008516 1.6e-74 283.9 267 57.7
FAN08G1175 Fragaria x ananassa HOM05D006764 ORTHO05D008516 6.0e-74 282.0 282 56.0
Peaxi162Scf00002g00261 Petunia axillaris HOM05D006764 ORTHO05D008516 1.3e-73 280.8 324 48.1
Duzib132G0537 Durio zibethinus HOM05D006764 ORTHO05D008516 3.0e-73 279.6 293 52.2
SEGI_07291 Sequoiadendron giganteum HOM05D006764 ORTHO05D008516 3.9e-73 279.3 313 48.6
COL.COLO4_17757 Corchorus olitorius HOM05D006764 ORTHO05D008516 1.5e-72 277.3 326 51.8
Zm00001eb082660 Zea mays HOM05D006764 ORTHO05D008516 8.1e-71 271.6 315 47.6
PSO017G2259 Papaver somniferum HOM05D006764 ORTHO05D008516 2.7e-66 256.5 229 58.5
Pp3c15_15530 Physcomitrium patens HOM05D006764 ORTHO05D008516 1.3e-65 254.2 301 42.5
Ca_00050_v3 Cicer arietinum L. HOM05D006764 ORTHO05D008516 3.3e-64 249.6 241 53.5
Nitab4.5_0008098g0020 Nicotiana tabacum HOM05D006764 ORTHO05D008516 3.3e-64 249.6 318 44.7
Mapoly0025s0102 Marchantia polymorpha HOM05D006764 ORTHO05D008516 2.8e-63 246.5 309 42.1
Haze_01822 Corylus avellana HOM05D006764 ORTHO05D008516 3.1e-62 243.0 341 43.1
Lsat_1_v5_gn_5_103781 Lactuca sativa HOM05D006764 ORTHO05D008516 3.4e-61 239.6 231 55.4
SHI04828 Sapria himalayana HOM05D006764 ORTHO05D008516 1.7e-60 237.3 262 50.4
Cpa.g.sc30.47 Carica papaya HOM05D006764 ORTHO05D008516 9.3e-59 231.5 161 71.4
AUR62014213 Chenopodium quinoa HOM05D006764 ORTHO05D008516 2.1e-58 230.3 319 44.2
SMO367G0572 Selaginella moellendorffii HOM05D006764 ORTHO05D008516 2.5e-56 223.4 310 42.9
Sed0008550 Sechium edule HOM05D000755 ORTHO05D000642 7.3e-56 221.9 265 49.4
SalBow7G3863 Salvia bowleyana HOM05D006764 ORTHO05D008516 1.1e-54 218.0 210 58.1
DCAR_029270 Daucus carota HOM05D006764 ORTHO05D008516 9.0e-46 188.3 189 54.0
AagrBONN_evm.TU.Sc2ySwM_228.3284 Anthoceros agrestis HOM05D006764 ORTHO05D008516 3.1e-38 163.3 220 41.8
Cfa005482 Carpinus fangiana HOM05D006764 ORTHO05D008516 2.0e-37 160.6 126 60.3
Cre01.g032350 Chlamydomonas reinhardtii HOM05D006764 ORTHO05D008516 1.3e-36 157.9 303 34.0
SEGI_28644 Sequoiadendron giganteum HOM05D006764 ORTHO05D008516 1.7e-36 157.5 150 54.7
Lj5A261T39 Lonicera japonica HOM05D006764 ORTHO05D008516 7.9e-34 148.7 231 43.3
Hund12938 Selenicereus undatus HOM05D006764 ORTHO05D008516 1.0e-33 148.3 160 51.2
CBR_g19125 Chara braunii HOM05D006764 ORTHO05D008516 2.4e-30 137.1 188 39.9
FAN04G0462 Fragaria x ananassa HOM05D006764 ORTHO05D008516 1.2e-29 134.8 83 79.5
Os04g0433200 Oryza sativa ssp. japonica HOM05D006764 ORTHO05D008516 5.5e-27 125.9 122 50.8
Hund29476 Selenicereus undatus HOM05D006764 ORTHO05D008516 3.7e-23 113.2 109 52.3
Hund29477 Selenicereus undatus HOM05D006764 ORTHO05D008516 3.7e-23 113.2 109 52.3
MCO04G067 Micromonas commoda HOM05D006764 ORTHO05D008516 3.1e-22 110.2 313 27.8
Nn6g34108 Nelumbo nucifera HOM05D006764 ORTHO05D008516 6.1e-10 69.3 81 46.9
MBI17_g13541_MAGBIO Magnolia biondii HOM05D006764 ORTHO05D008516 1.1e-08 65.1 51 64.7
Nn3g16387 Nelumbo nucifera HOM05D006764 ORTHO05D008516 7.4e-08 62.4 69 44.9
Nn1g06486 Nelumbo nucifera HOM05D027421 ORTHO05D008516 4.1e-06 56.6 91 37.4
Cc00_g10410 Coffea canephora HOM05D006764 ORTHO05D008516 9.1e-06 55.5 55 58.2


User provided reference genes

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