Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20782 Brassica carinata HOM05D004182 ORTHO05D007321 6.2e-29 130.2 69 100.0
CARHR282390 Cardamine hirsuta HOM05D004182 ORTHO05D007321 6.2e-29 130.2 69 100.0
CARHR282490 Cardamine hirsuta HOM05D004182 ORTHO05D007321 6.2e-29 130.2 69 100.0
BolSC29t60499H Brassica oleracea HOM05D004182 ORTHO05D007321 8.1e-29 129.8 68 100.0
BolSC29t60540H Brassica oleracea HOM05D004182 ORTHO05D007321 8.1e-29 129.8 68 100.0
BolSC29t60624H Brassica oleracea HOM05D004182 ORTHO05D007321 8.1e-29 129.8 68 100.0
BolSC35t60684H Brassica oleracea HOM05D004182 ORTHO05D007321 8.1e-29 129.8 68 100.0
BolSC46t60966H Brassica oleracea HOM05D004182 ORTHO05D007321 8.1e-29 129.8 68 100.0
BolSC47t61059H Brassica oleracea HOM05D004182 ORTHO05D007321 8.1e-29 129.8 68 100.0
BolSC49t61134H Brassica oleracea HOM05D004182 ORTHO05D007321 8.1e-29 129.8 68 100.0
BraSC138t45528Z Brassica rapa HOM05D004182 ORTHO05D007321 8.1e-29 129.8 68 100.0
BraSC59t46534Z Brassica rapa HOM05D004182 ORTHO05D007321 8.1e-29 129.8 68 100.0
BraSC58t46455Z Brassica rapa HOM05D004182 ORTHO05D007321 1.5e-27 125.6 68 97.1
BraSC179t45780Z Brassica rapa HOM05D004182 ORTHO05D007321 1.3e-26 122.5 64 100.0
Gohir.1Z051066 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.1e-25 119.4 69 92.8
Gohir.A04G039255 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.1e-25 119.4 69 92.8
Gohir.1Z049982 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.4e-25 119.0 69 91.3
VMungo0720G0997 Vigna mungo HOM05D004182 ORTHO05D007321 1.9e-25 118.6 68 91.2
VMungo0942G0003 Vigna mungo HOM05D004182 ORTHO05D007321 1.9e-25 118.6 68 91.2
Sopen06g015050 Solanum pennellii HOM05D004182 ORTHO05D007321 4.1e-25 117.5 69 92.8
Sopen09g020810 Solanum pennellii HOM05D004182 ORTHO05D007321 4.1e-25 117.5 69 92.8
Nn064s42221 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.1e-25 116.7 69 92.8
Nn349s46475 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.1e-25 116.7 69 92.8
Nn403s46571 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.1e-25 116.7 69 92.8
Nn4g25379 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.1e-25 116.7 69 92.8
Gohir.A12G165450 Gossypium hirsutum HOM05D004182 ORTHO05D007321 9.2e-25 116.3 69 91.3
arahy.Tifrunner.gnm1.ann1.DWP51K Arachis hypogaea HOM05D000963 ORTHO05D007321 7.8e-24 113.2 68 88.2
arahy.Tifrunner.gnm1.ann1.QIZU11 Arachis hypogaea HOM05D007250 ORTHO05D009162 7.8e-24 113.2 68 88.2
arahy.Tifrunner.gnm1.ann1.TV6F30 Arachis hypogaea HOM05D004182 ORTHO05D007321 7.8e-24 113.2 68 88.2
EL10Ac7g17372 Beta vulgaris HOM05D004182 ORTHO05D007321 7.8e-24 113.2 69 89.9
EL10As10g23966 Beta vulgaris HOM05D004182 ORTHO05D007321 7.8e-24 113.2 69 89.9
CARHR044290 Cardamine hirsuta HOM05D004182 ORTHO05D007321 7.8e-24 113.2 61 96.7
Ca_24280_v3 Cicer arietinum L. HOM05D004182 ORTHO05D007321 1.3e-23 112.5 68 89.7
arahy.Tifrunner.gnm1.ann1.UTH6FS Arachis hypogaea HOM05D004182 ORTHO05D007321 1.7e-23 112.1 69 87.0
BolSC29t60554H Brassica oleracea HOM05D004182 ORTHO05D007321 1.7e-23 112.1 69 88.4
Nn031s41606 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.7e-23 112.1 70 91.4
Sopen10g016590 Solanum pennellii HOM05D004182 ORTHO05D007321 3.0e-23 111.3 69 88.4
arahy.Tifrunner.gnm1.ann1.04MME8 Arachis hypogaea HOM05D004182 ORTHO05D007321 5.1e-23 110.5 68 86.8
arahy.Tifrunner.gnm1.ann1.MI7UCB Arachis hypogaea HOM05D004182 ORTHO05D007321 5.1e-23 110.5 68 86.8
arahy.Tifrunner.gnm1.ann1.NV4G0I Arachis hypogaea HOM05D004182 ORTHO05D007321 5.1e-23 110.5 69 87.0
Lsat_1_v5_gn_0_47640 Lactuca sativa HOM05D004182 ORTHO05D007321 5.1e-23 110.5 69 88.4
arahy.Tifrunner.gnm1.ann1.73L6LP Arachis hypogaea HOM05D004182 ORTHO05D007321 2.5e-22 108.2 69 85.5
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 5.6e-22 107.1 68 85.3
Hma1.2p1_1418F.1_g282260 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 1.6e-21 105.5 69 84.1
Psat0s9163g0080 Pisum sativum HOM05D004182 ORTHO05D007321 3.6e-21 104.4 68 85.3
Nn219s45281 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.7e-21 104.0 62 91.9
Nn442s46688 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.7e-21 104.0 62 91.9
Psat7g033600 Pisum sativum HOM05D004182 ORTHO05D007321 1.4e-20 102.4 69 84.1
C09p40270 Brassica napus HOM05D004182 ORTHO05D007321 1.8e-20 102.1 68 82.4
Gohir.D05G169433 Gossypium hirsutum HOM05D004182 ORTHO05D007321 4.0e-20 100.9 69 82.6
Hma1.2p1_0043F.1_g025830 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 4.0e-20 100.9 68 76.5
Psat5g118800 Pisum sativum HOM05D004182 ORTHO05D007321 4.0e-20 100.9 68 82.4
arahy.Tifrunner.gnm1.ann1.8WTZ4N Arachis hypogaea HOM05D004182 ORTHO05D007321 5.2e-20 100.5 63 85.7
Cpa.g.c43052.1 Carica papaya HOM05D004182 ORTHO05D007321 3.4e-19 97.8 58 89.7
EL10Ac8g19701 Beta vulgaris HOM05D004182 ORTHO05D007321 4.4e-19 97.4 63 85.7
Psat0s2011g0080 Pisum sativum HOM05D004182 ORTHO05D007321 5.8e-19 97.1 67 80.6
PGSC0003DMG400043035 Solanum tuberosum HOM05D004182 ORTHO05D007321 1.3e-18 95.9 63 87.3
Gohir.D13G041550 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.7e-18 95.5 69 76.8
LjContig00318g0013893 Lotus japonicus HOM05D004182 ORTHO05D007321 1.7e-18 95.5 68 76.5
arahy.Tifrunner.gnm1.ann1.S1ZEXT Arachis hypogaea HOM05D004182 ORTHO05D007321 8.4e-18 93.2 57 86.0
Sed0007203 Sechium edule HOM05D004182 ORTHO05D007321 1.4e-17 92.4 69 76.8
Sed0018388 Sechium edule HOM05D004182 ORTHO05D007321 1.4e-17 92.4 69 76.8
Sed0018833 Sechium edule HOM05D004182 ORTHO05D007321 1.4e-17 92.4 69 76.8
Sed0022676 Sechium edule HOM05D004182 ORTHO05D007321 1.4e-17 92.4 69 76.8
Glyma.09G133950 Glycine max HOM05D004182 ORTHO05D007321 1.9e-17 92.0 69 71.0
Psat5g167880 Pisum sativum HOM05D000009 ORTHO05D000008 1.9e-17 92.0 68 76.5
Hma1.2p1_0594F.1_g185812 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 2.4e-17 91.7 68 75.0
Nn070s42382 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.2e-17 90.9 58 86.2
Sc14g0004760 Simmondsia chinensis HOM05D004182 ORTHO05D007321 4.2e-17 90.9 63 82.5
Sopen02g002730 Solanum pennellii HOM05D004182 ORTHO05D007321 4.2e-17 90.9 67 76.1
PGSC0003DMG400027964 Solanum tuberosum HOM05D004182 ORTHO05D007321 4.2e-17 90.9 59 86.4
PGSC0003DMG400027965 Solanum tuberosum HOM05D004182 ORTHO05D007321 5.4e-17 90.5 58 86.2
PGSC0003DMG400041917 Solanum tuberosum HOM05D004182 ORTHO05D007321 5.4e-17 90.5 58 86.2
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 7.1e-17 90.1 68 75.0
Sc21g0003840 Simmondsia chinensis HOM05D004182 ORTHO05D007321 1.2e-16 89.4 58 84.5
SHI36542 Sapria himalayana HOM05D004182 ORTHO05D007321 2.1e-16 88.6 69 75.4
arahy.Tifrunner.gnm1.ann1.GMF9U8 Arachis hypogaea HOM05D004182 ORTHO05D007321 2.7e-16 88.2 68 73.5
Nn029s41584 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.7e-16 88.2 58 84.5
Nn212s45203 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.7e-16 88.2 58 84.5
Nn264s45947 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.7e-16 88.2 58 84.5
Nn304s46229 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.7e-16 88.2 58 84.5
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 3.5e-16 87.8 58 82.8
BraSC25t45918Z Brassica rapa HOM05D004182 ORTHO05D007321 4.6e-16 87.4 44 100.0
BolSC45t60917H Brassica oleracea HOM05D004182 ORTHO05D007321 1.0e-15 86.3 45 97.8
Sed0024115 Sechium edule HOM05D004182 ORTHO05D007321 1.0e-15 86.3 69 72.5
Sc03g0005670 Simmondsia chinensis HOM05D004182 ORTHO05D007321 1.0e-15 86.3 58 81.0
BolSC44t60830H Brassica oleracea HOM05D004182 ORTHO05D007321 2.3e-15 85.1 45 95.6
Glyma.09G164000 Glycine max HOM05D004182 ORTHO05D007321 6.6e-15 83.6 55 81.8
Phvul.010G003500 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 6.6e-15 83.6 69 71.0
Psat4g168320 Pisum sativum HOM05D004182 ORTHO05D007321 1.5e-14 82.4 67 73.1
BolSC49t61151H Brassica oleracea HOM05D004182 ORTHO05D007321 2.5e-14 81.6 46 95.7
arahy.Tifrunner.gnm1.ann1.5LT2YD Arachis hypogaea HOM05D000580 ORTHO05D007321 3.3e-14 81.3 65 69.2
Sc05g0004140 Simmondsia chinensis HOM05D001966 ORTHO05D011119 3.3e-14 81.3 58 79.3
BcaC05g26432 Brassica carinata HOM05D004182 ORTHO05D007321 2.8e-13 78.2 58 75.9
HPP92_028384 Vanilla planifolia HOM05D004182 ORTHO05D007321 4.8e-13 77.4 49 91.8
HPP92_028405 Vanilla planifolia HOM05D004182 ORTHO05D007321 4.8e-13 77.4 49 91.8
HPP92_028414 Vanilla planifolia HOM05D004182 ORTHO05D007321 4.8e-13 77.4 49 91.8
HPP92_028420 Vanilla planifolia HOM05D004182 ORTHO05D007321 4.8e-13 77.4 49 91.8
HPP92_028429 Vanilla planifolia HOM05D004182 ORTHO05D007321 4.8e-13 77.4 49 91.8
HPP92_028433 Vanilla planifolia HOM05D004182 ORTHO05D007321 4.8e-13 77.4 49 91.8
Phvul.010G035850 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 1.5e-11 72.4 51 78.4
Psat0s1116g0080 Pisum sativum HOM05D004182 ORTHO05D007321 2.0e-11 72.0 49 83.7
Nn6g32823 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.6e-11 71.6 65 69.2
CAN.G1119.15 Capsicum annuum HOM05D002978 ORTHO05D003339 5.8e-11 70.5 62 66.1
Sed0012210 Sechium edule HOM05D004182 ORTHO05D007321 5.8e-11 70.5 69 62.3
arahy.Tifrunner.gnm1.ann1.096T0J Arachis hypogaea HOM05D004182 ORTHO05D007321 7.6e-11 70.1 67 61.2
Nn8g40575 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.3e-10 69.3 48 81.2
ECA247G0006 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.4e-09 63.9 38 86.8
Phvul.003G041600 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 3.5e-08 61.2 49 73.5
Phvul.010G068400 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 6.0e-08 60.5 48 75.0
Migut.I00342 Erythranthe guttata HOM05D004182 ORTHO05D007321 7.9e-08 60.1 38 89.5
Ciclev10010312m.g Citrus clementina HOM05D000071 ORTHO05D000029 1.3e-07 59.3 37 89.2
BraSC103t45435Z Brassica rapa HOM05D004182 ORTHO05D007321 1.9e-06 55.5 35 82.9
Cpa.g.sc76.14 Carica papaya HOM05D004182 ORTHO05D007321 4.3e-06 54.3 33 78.8
Sopen09g027020 Solanum pennellii HOM05D001966 ORTHO05D011119 7.4e-06 53.5 36 86.1


User provided reference genes

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