Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20762 Brassica carinata HOM05D006121 ORTHO05D009559 1.7e-268 928.7 466 100.0
BcaC04g23210 Brassica carinata HOM05D006121 ORTHO05D009559 2.4e-177 625.9 494 69.4
BcaC03g15130 Brassica carinata HOM05D006121 ORTHO05D009559 8.9e-164 580.9 479 68.3
BcaC01g05819 Brassica carinata HOM05D006121 ORTHO05D009559 5.4e-153 545.0 510 62.0
BcaC03g16227 Brassica carinata HOM05D006121 ORTHO05D009559 7.1e-153 544.7 495 62.6
BcaC07g37897 Brassica carinata HOM05D006121 ORTHO05D009559 6.9e-148 528.1 509 61.1
BcaC07g37903 Brassica carinata HOM05D006121 ORTHO05D009559 1.6e-141 506.9 532 57.7
BcaC06g36507 Brassica carinata HOM05D006121 ORTHO05D009559 3.4e-139 499.2 529 56.3
BcaC01g02238 Brassica carinata HOM05D006121 ORTHO05D009559 1.3e-135 487.3 528 54.4
BcaC05g27433 Brassica carinata HOM05D006121 ORTHO05D009559 1.1e-116 424.5 505 51.7
BcaC03g17371 Brassica carinata HOM05D006121 ORTHO05D009559 3.2e-105 386.3 489 49.1
BraA09t38607Z Brassica rapa HOM05D006121 ORTHO05D009559 1.8e-103 380.6 417 56.1
BcaC03g16371 Brassica carinata HOM05D006121 ORTHO05D009559 5.9e-91 339.0 433 50.3
BcaC04g23066 Brassica carinata HOM05D006121 ORTHO05D009559 5.9e-91 339.0 452 49.3
BcaC04g20594 Brassica carinata HOM05D006121 ORTHO05D009559 5.2e-71 272.7 399 45.1
BcaC06g35988 Brassica carinata HOM05D006121 ORTHO05D009559 6.0e-67 259.2 365 49.0
BolC7t41498H Brassica oleracea HOM05D006121 ORTHO05D009559 1.2e-62 245.0 169 70.4
BraA06t25079Z Brassica rapa HOM05D006121 ORTHO05D009559 2.5e-49 200.7 166 63.3
BcaC05g27793 Brassica carinata HOM05D006121 ORTHO05D009559 9.6e-49 198.7 254 42.5
BcaC08g42951 Brassica carinata HOM05D006121 ORTHO05D009559 9.6e-49 198.7 213 44.1
BcaC01g06835 Brassica carinata HOM05D006121 ORTHO05D009559 8.1e-48 195.7 534 30.5
BcaC09g51377 Brassica carinata HOM05D006121 ORTHO05D009559 1.9e-44 184.5 121 73.6
BcaC02g11248 Brassica carinata HOM05D006121 ORTHO05D009559 9.3e-44 182.2 538 28.6
BcaC07g37147 Brassica carinata HOM05D006121 ORTHO05D009559 4.6e-43 179.9 289 36.7
BcaC09g49745 Brassica carinata HOM05D006121 ORTHO05D009559 4.6e-43 179.9 204 44.1
BcaC05g27675 Brassica carinata HOM05D006121 ORTHO05D009559 1.0e-42 178.7 210 41.4
BcaC01g02132 Brassica carinata HOM05D006121 ORTHO05D009559 1.7e-42 177.9 218 40.4
BcaC02g11960 Brassica carinata HOM05D006121 ORTHO05D009559 8.7e-42 175.6 526 28.7
BcaC09g49299 Brassica carinata HOM05D006121 ORTHO05D009559 4.3e-41 173.3 413 30.8
BolC9t56759H Brassica oleracea HOM05D006121 ORTHO05D009559 1.3e-40 171.8 146 63.0
BcaC09g49729 Brassica carinata HOM05D006121 ORTHO05D009559 2.4e-39 167.5 192 43.8
BcaC03g16521 Brassica carinata HOM05D006121 ORTHO05D009559 9.0e-39 165.6 205 42.0
Carub.0003s2904 Capsella rubella HOM05D006121 ORTHO05D009559 3.4e-38 163.7 318 34.0
BcaC04g21502 Brassica carinata HOM05D006121 ORTHO05D009559 7.9e-35 152.5 199 39.7
BcaC06g36167 Brassica carinata HOM05D006121 ORTHO05D009559 5.6e-33 146.4 422 31.0
BcaC08g43580 Brassica carinata HOM05D006121 ORTHO05D009559 9.6e-33 145.6 437 30.0
BolC9t58013H Brassica oleracea HOM05D006121 ORTHO05D009559 1.5e-30 138.3 185 43.2
BcaC02g09767 Brassica carinata HOM05D006121 ORTHO05D009559 2.2e-29 134.4 222 36.5
BcaC03g16486 Brassica carinata HOM05D006121 ORTHO05D009559 6.4e-29 132.9 168 38.7
BcaC05g28468 Brassica carinata HOM05D006121 ORTHO05D009559 2.1e-27 127.9 162 38.9
BcaC05g28043 Brassica carinata HOM05D006121 ORTHO05D009559 6.7e-26 122.9 110 49.1
BolC4t24012H Brassica oleracea HOM05D006121 ORTHO05D009559 6.7e-26 122.9 72 77.8
BcaC05g27828 Brassica carinata HOM05D006121 ORTHO05D009559 1.5e-25 121.7 124 56.5
BcaC09g49792 Brassica carinata HOM05D006121 ORTHO05D009559 1.9e-25 121.3 94 71.3
BcaC08g45230 Brassica carinata HOM05D006121 ORTHO05D002427 1.1e-23 115.5 296 31.1
BcaC08g42838 Brassica carinata HOM05D006121 ORTHO05D009559 1.2e-22 112.1 92 50.0
C05p29190 Brassica napus HOM05D006121 ORTHO05D009559 1.5e-22 111.7 208 35.6
BolC3t20163H Brassica oleracea HOM05D006121 ORTHO05D009559 2.6e-22 110.9 389 28.0
BcaC09g49541 Brassica carinata HOM05D006121 ORTHO05D009559 5.8e-22 109.8 184 43.5
BcaC09g50206 Brassica carinata HOM05D006121 ORTHO05D009559 1.9e-20 104.8 113 43.4
BcaC04g20036 Brassica carinata HOM05D006121 ORTHO05D009559 2.5e-20 104.4 95 63.2
BcaC03g15823 Brassica carinata HOM05D006121 ORTHO05D009559 7.1e-20 102.8 113 40.7
Carub.0007s3611 Capsella rubella HOM05D009492 ORTHO05D011693 7.1e-20 102.8 305 28.5
Carub.0007s3731 Capsella rubella HOM05D009492 ORTHO05D011693 1.2e-19 102.1 325 27.1
BcaC01g00176 Brassica carinata HOM05D006121 ORTHO05D009559 2.1e-19 101.3 107 43.9
AL4G14310 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 6.0e-19 99.8 212 29.7
Carub.0002s0942 Capsella rubella HOM05D009492 ORTHO05D011693 2.3e-18 97.8 386 24.6
Carub.0002s0916 Capsella rubella HOM05D009492 ORTHO05D011693 3.9e-18 97.1 205 31.2
Carub.0006s2644 Capsella rubella HOM05D009492 ORTHO05D011693 5.1e-18 96.7 308 26.6
Carub.0005s0956 Capsella rubella HOM05D009492 ORTHO05D011693 8.7e-18 95.9 174 32.2
Carub.0008s0728 Capsella rubella HOM05D009492 ORTHO05D011693 1.5e-17 95.1 211 28.4
CARHR115630 Cardamine hirsuta HOM05D008458 ORTHO05D010628 3.3e-17 94.0 161 34.2
AL2G23320 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 1.3e-16 92.0 392 23.2
AT4G03830 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 1.6e-16 91.7 353 24.9
BcaC06g35841 Brassica carinata HOM05D006121 ORTHO05D009559 2.1e-16 91.3 93 46.2
BcaC03g16573 Brassica carinata HOM05D006121 ORTHO05D009559 4.8e-16 90.1 168 35.1
BcaC06g35787 Brassica carinata HOM05D006121 ORTHO05D009559 4.8e-16 90.1 129 47.3
BcaB04g17962 Brassica carinata HOM05D006121 ORTHO05D009559 8.2e-16 89.4 89 50.6
BcaC07g37265 Brassica carinata HOM05D006121 ORTHO05D009559 8.2e-16 89.4 93 44.1
Carub.0001s3424 Capsella rubella HOM05D009492 ORTHO05D011693 8.2e-16 89.4 222 28.4
AL1G50390 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 1.8e-15 88.2 301 25.2
Carub.0002s0975 Capsella rubella HOM05D009492 ORTHO05D011693 3.1e-15 87.4 153 34.0
BcaC04g20823 Brassica carinata HOM05D006121 ORTHO05D009559 6.9e-15 86.3 135 33.3
Carub.0002s1048 Capsella rubella HOM05D009492 ORTHO05D011693 1.5e-14 85.1 360 25.6
AT1G51172 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 2.6e-14 84.3 198 27.8
Carub.0003s2742 Capsella rubella HOM05D009492 ORTHO05D011693 3.4e-14 84.0 161 29.8
BcaC06g33795 Brassica carinata HOM05D003421 ORTHO05D003268 1.7e-13 81.6 51 82.4
Carub.0001s3399 Capsella rubella HOM05D008386 ORTHO05D010572 1.7e-13 81.6 603 22.4
BcaC03g15126 Brassica carinata HOM05D006121 ORTHO05D009559 2.9e-13 80.9 130 32.3
BcaC09g49805 Brassica carinata HOM05D006121 ORTHO05D023846 6.5e-13 79.7 45 77.8
BcaB05g23675 Brassica carinata HOM05D006121 ORTHO05D016754 1.4e-12 78.6 138 39.9
BolC5t32557H Brassica oleracea HOM05D006121 ORTHO05D009559 1.4e-12 78.6 97 45.4
Carub.0003s2830 Capsella rubella HOM05D009492 ORTHO05D011693 1.9e-12 78.2 171 25.7
Carub.0008s0719 Capsella rubella HOM05D009492 ORTHO05D011693 1.9e-12 78.2 132 32.6
Sp4g11160 Schrenkiella parvula HOM05D010772 ORTHO05D005680 3.2e-12 77.4 207 26.6
Carub.0004s0672 Capsella rubella HOM05D009492 ORTHO05D011693 4.2e-12 77.0 325 24.9
BcaC08g44150 Brassica carinata HOM05D006121 ORTHO05D009559 9.3e-12 75.9 85 50.6
BraA05t20949Z Brassica rapa HOM05D006121 ORTHO05D009559 1.6e-11 75.1 91 41.8
Carub.0007s3212 Capsella rubella HOM05D009492 ORTHO05D011693 1.6e-11 75.1 231 26.4
Carub.0072s0001 Capsella rubella HOM05D010629 ORTHO05D005680 2.1e-11 74.7 154 25.3
Carub.0003s2807 Capsella rubella HOM05D010629 ORTHO05D005680 4.6e-11 73.6 154 25.3
Carub.0007s2123 Capsella rubella HOM05D010629 ORTHO05D005680 7.9e-11 72.8 193 26.9
CARHR174650 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.8e-10 71.6 150 32.0
Carub.0002s1244 Capsella rubella HOM05D010629 ORTHO05D005680 3.0e-10 70.9 193 26.4
Carub.0006s0276 Capsella rubella HOM05D010629 ORTHO05D005680 3.0e-10 70.9 193 26.4
BcaC02g10790 Brassica carinata HOM05D006121 ORTHO05D023846 3.9e-10 70.5 112 40.2
Carub.0005s0210 Capsella rubella HOM05D010629 ORTHO05D005680 5.1e-10 70.1 195 24.1
Carub.0007s3050 Capsella rubella HOM05D010629 ORTHO05D005680 6.7e-10 69.7 154 24.0
AL3G43600 Arabidopsis lyrata HOM05D010629 ORTHO05D005680 1.1e-09 68.9 166 28.9
BcaC02g10718 Brassica carinata HOM05D006121 ORTHO05D009559 1.9e-09 68.2 87 37.9
Carub.0353s0001 Capsella rubella HOM05D010629 ORTHO05D005680 1.9e-09 68.2 188 26.6
AT1G46696 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 3.3e-09 67.4 161 25.5
CARHR035710 Cardamine hirsuta HOM05D008458 ORTHO05D010628 3.3e-09 67.4 161 29.8
BcaB02g06461 Brassica carinata HOM05D006121 ORTHO05D009559 1.3e-08 65.5 121 35.5
BcaC04g19800 Brassica carinata HOM05D006121 ORTHO05D023846 1.3e-08 65.5 45 62.2
BcaB03g15586 Brassica carinata HOM05D002078 ORTHO05D005680 1.6e-08 65.1 174 27.6
BcaC04g22048 Brassica carinata HOM05D006121 ORTHO05D009559 2.2e-08 64.7 72 44.4
Sp4g04860 Schrenkiella parvula HOM05D010772 ORTHO05D005680 2.2e-08 64.7 286 23.4
BcaC03g16668 Brassica carinata HOM05D006121 ORTHO05D009559 4.8e-08 63.5 98 38.8
Carub.0004s1788 Capsella rubella HOM05D009492 ORTHO05D011693 4.8e-08 63.5 325 23.4
AT1G20400 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 1.4e-07 62.0 232 23.3
BolC8t48817H Brassica oleracea HOM05D006121 ORTHO05D009559 1.4e-07 62.0 163 33.1
BcaC01g02164 Brassica carinata HOM05D008386 ORTHO05D010572 2.4e-07 61.2 189 28.6
BcaC07g38368 Brassica carinata HOM05D002078 ORTHO05D005680 3.1e-07 60.8 154 27.9
BraA06t25080Z Brassica rapa HOM05D006121 ORTHO05D023846 3.1e-07 60.8 38 73.7
CARHR119450 Cardamine hirsuta HOM05D006121 ORTHO05D043487 5.3e-07 60.1 85 37.6
BcaNung03347 Brassica carinata HOM05D006121 ORTHO05D009559 6.9e-07 59.7 36 83.3
BcaC02g11611 Brassica carinata HOM05D002078 ORTHO05D005680 1.2e-06 58.9 173 26.0
BcaC01g02131 Brassica carinata HOM05D006121 ORTHO05D013509 1.5e-06 58.5 208 28.4
AT3G42060 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 2.0e-06 58.2 149 30.2
BcaC04g20966 Brassica carinata HOM05D006121 ORTHO05D009559 3.4e-06 57.4 155 35.5
AT3G30230 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 4.5e-06 57.0 118 30.5
BcaC04g20824 Brassica carinata HOM05D006121 ORTHO05D013509 5.9e-06 56.6 208 28.8


User provided reference genes

Program Settings