Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 1.9e-42 175.3 80 100.0
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 1.9e-37 158.7 72 100.0
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.9e-37 158.7 72 100.0
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 2.5e-37 158.3 80 88.8
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 5.5e-37 157.1 72 98.6
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 5.5e-37 157.1 72 98.6
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 7.9e-36 153.3 74 94.6
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 1.3e-35 152.5 72 95.8
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 1.3e-35 152.5 72 95.8
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 1.3e-35 152.5 72 95.8
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 1.3e-35 152.5 72 95.8
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 4.3e-34 147.5 72 91.7
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 2.8e-33 144.8 72 87.5
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 6.3e-33 143.7 72 90.3
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.1e-32 142.9 72 90.3
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.4e-32 142.5 72 88.9
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 2.4e-32 141.7 72 87.5
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 6.5e-30 133.7 72 77.8
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 1.4e-29 132.5 72 81.9
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 2.5e-29 131.7 72 76.4
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 2.5e-29 131.7 72 79.2
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 7.2e-29 130.2 72 77.8
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 7.2e-29 130.2 72 75.0
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 2.1e-28 128.6 72 75.0
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 2.7e-28 128.3 72 73.6
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 3.6e-28 127.9 78 69.2
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 3.6e-28 127.9 73 72.6
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 3.6e-28 127.9 72 75.0
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 4.6e-28 127.5 72 72.2
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 4.6e-28 127.5 73 75.3
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 6.1e-28 127.1 72 75.0
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 7.9e-28 126.7 72 73.6
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 7.9e-28 126.7 72 76.4
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 1.0e-27 126.3 72 72.2
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.0e-27 126.3 72 73.6
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 1.0e-27 126.3 72 73.6
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 1.0e-27 126.3 72 72.2
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 1.4e-27 125.9 87 69.0
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 1.4e-27 125.9 72 72.2
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 1.4e-27 125.9 72 75.0
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.8e-27 125.6 72 73.6
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 1.8e-27 125.6 72 73.6
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.8e-27 125.6 72 73.6
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.8e-27 125.6 72 73.6
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 1.8e-27 125.6 72 75.0
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 1.8e-27 125.6 72 75.0
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.8e-27 125.6 72 75.0
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 1.8e-27 125.6 72 75.0
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 1.8e-27 125.6 72 73.6
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 2.3e-27 125.2 72 72.2
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 3.0e-27 124.8 72 72.2
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 3.0e-27 124.8 72 72.2
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 3.0e-27 124.8 72 72.2
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 3.0e-27 124.8 73 71.2
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 3.9e-27 124.4 73 74.0
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 3.9e-27 124.4 72 70.8
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 5.1e-27 124.0 72 73.6
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 5.1e-27 124.0 72 70.8
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 5.1e-27 124.0 72 75.0
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 6.7e-27 123.6 72 70.8
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 6.7e-27 123.6 72 72.2
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 6.7e-27 123.6 72 70.8
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 8.8e-27 123.2 72 72.2
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 8.8e-27 123.2 72 72.2
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 8.8e-27 123.2 72 70.8
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 8.8e-27 123.2 72 72.2
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 8.8e-27 123.2 72 70.8
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 8.8e-27 123.2 72 70.8
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 8.8e-27 123.2 72 68.1
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 8.8e-27 123.2 72 70.8
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 1.1e-26 122.9 72 70.8
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.1e-26 122.9 72 73.6
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 1.1e-26 122.9 72 75.0
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.5e-26 122.5 72 70.8
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.5e-26 122.5 72 75.0
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.0e-26 122.1 73 71.2
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 3.3e-26 121.3 71 71.8
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 4.3e-26 120.9 72 72.2
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 4.3e-26 120.9 72 68.1
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 4.3e-26 120.9 72 70.8
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 4.3e-26 120.9 72 69.4
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 7.4e-26 120.2 72 70.8
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.3e-25 119.4 72 70.8
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.3e-25 119.4 72 69.4
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 1.7e-25 119.0 72 66.7
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 2.8e-25 118.2 72 69.4
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 3.7e-25 117.9 72 69.4
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 6.3e-25 117.1 72 68.1
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 6.3e-25 117.1 72 66.7
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 6.3e-25 117.1 72 68.1
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 6.3e-25 117.1 73 68.5
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 8.2e-25 116.7 72 68.1
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 1.1e-24 116.3 72 65.3
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 1.1e-24 116.3 71 67.6
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 1.4e-24 115.9 72 68.1
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.4e-24 115.9 72 68.1
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 1.4e-24 115.9 72 68.1
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.8e-24 115.5 71 66.2
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 4.1e-24 114.4 72 66.7
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 5.3e-24 114.0 72 66.7
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 6.9e-24 113.6 72 65.3
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 6.9e-24 113.6 70 67.1
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 6.9e-24 113.6 72 65.3
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 1.2e-23 112.8 72 69.4
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 1.5e-23 112.5 73 69.9
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 2.6e-23 111.7 74 62.2
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 3.4e-23 111.3 72 63.9
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 4.5e-23 110.9 72 63.9
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 4.5e-23 110.9 72 68.1
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 5.9e-23 110.5 108 50.0
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 5.9e-23 110.5 72 68.1
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 5.9e-23 110.5 72 63.9
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 1.0e-22 109.8 72 65.3
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 1.0e-22 109.8 69 66.7
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.2e-22 108.6 72 62.5
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.2e-22 108.6 72 62.5
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 2.2e-22 108.6 72 62.5
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 2.9e-22 108.2 72 62.5
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.9e-22 108.2 72 62.5
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 5.0e-22 107.5 65 69.2
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 6.5e-22 107.1 72 61.1
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.5e-21 105.1 71 64.8
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 3.2e-21 104.8 72 61.1
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 3.2e-21 104.8 64 68.8
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 4.2e-21 104.4 72 65.3
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 6.1e-20 100.5 72 63.9
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 1.8e-19 99.0 73 58.9
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 9.7e-18 93.2 53 71.7
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 2.2e-17 92.0 73 56.2
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 7.7e-15 83.6 72 50.0
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.7e-14 82.4 46 73.9
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 3.8e-14 81.3 64 56.2
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 1.5e-13 79.3 65 55.4
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 9.4e-13 76.6 46 69.6
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 8.2e-09 63.5 59 44.1
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 7.0e-08 60.5 35 71.4
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 9.1e-08 60.1 62 40.3


User provided reference genes

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