Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 3.7e-157 558.1 279 100.0
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 3.1e-143 511.9 283 90.8
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 1.3e-138 496.5 283 88.3
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 1.4e-135 486.5 241 100.0
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 1.4e-135 486.5 241 100.0
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 6.4e-133 477.6 241 97.5
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 6.4e-133 477.6 241 97.5
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 1.2e-131 473.4 279 84.2
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 1.9e-129 466.1 283 83.0
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 1.6e-128 463.0 279 81.7
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 8.1e-128 460.7 276 82.6
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 2.4e-119 432.6 306 73.2
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 1.6e-112 409.8 280 72.9
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 1.5e-110 403.3 218 88.1
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.4e-103 380.2 280 66.4
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 3.1e-103 379.0 285 66.3
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 3.1e-103 379.0 279 66.3
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 6.9e-103 377.9 281 66.5
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 7.1e-100 367.9 275 65.8
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 1.2e-99 367.1 274 66.1
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 1.2e-99 367.1 287 64.5
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 2.3e-98 362.8 278 63.7
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 2.3e-98 362.8 282 64.5
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 3.0e-98 362.5 276 63.8
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 7.4e-97 357.8 280 64.3
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 1.3e-96 357.1 274 62.8
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 4.8e-96 355.1 279 62.4
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 6.2e-96 354.8 280 63.6
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 6.2e-96 354.8 283 62.2
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 8.1e-96 354.4 282 63.8
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 1.8e-95 353.2 283 63.6
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 2.4e-95 352.8 280 61.4
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 3.1e-95 352.4 276 63.0
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 5.3e-95 351.7 283 63.6
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 6.9e-95 351.3 279 62.0
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 9.0e-95 350.9 277 61.4
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 9.0e-95 350.9 275 62.2
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 1.5e-94 350.1 285 62.5
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 3.4e-94 349.0 283 61.1
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 3.4e-94 349.0 275 62.5
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 5.8e-94 348.2 281 62.3
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 7.6e-94 347.8 278 62.2
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 1.3e-93 347.1 274 60.2
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 1.7e-93 346.7 253 66.4
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 2.9e-93 345.9 283 60.8
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 1.1e-92 344.0 282 59.9
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 7.1e-92 341.3 286 60.1
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 7.1e-92 341.3 286 60.1
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 1.6e-91 340.1 278 58.6
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 2.7e-91 339.3 269 62.1
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 3.5e-91 339.0 274 61.3
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 3.5e-91 339.0 286 61.2
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 3.5e-91 339.0 278 58.3
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 4.6e-91 338.6 286 61.5
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 6.0e-91 338.2 285 61.4
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 1.0e-90 337.4 279 60.6
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.3e-90 337.0 276 60.1
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 1.8e-90 336.7 250 64.8
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 2.3e-90 336.3 248 66.5
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 3.0e-90 335.9 257 65.0
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 3.0e-90 335.9 282 59.6
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 3.9e-90 335.5 284 60.2
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 3.9e-90 335.5 305 55.7
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 8.7e-90 334.3 279 62.4
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.1e-89 334.0 250 66.0
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 1.5e-89 333.6 277 59.9
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 1.5e-89 333.6 284 57.7
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 1.9e-89 333.2 247 66.4
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 2.5e-89 332.8 218 70.6
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 3.3e-89 332.4 254 64.2
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 7.4e-89 331.3 309 56.3
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 9.6e-89 330.9 268 61.9
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 3.1e-87 325.9 279 57.7
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 5.3e-87 325.1 284 58.5
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 2.6e-86 322.8 222 67.6
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 4.5e-86 322.0 279 57.7
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 6.5e-85 318.2 251 61.8
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 8.5e-85 317.8 221 66.1
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 1.4e-84 317.0 228 64.9
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 1.9e-84 316.6 263 60.1
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 3.2e-84 315.8 252 63.9
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 1.2e-83 313.9 222 66.2
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.7e-83 312.8 245 62.4
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 7.9e-83 311.2 245 62.4
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 1.0e-82 310.8 217 65.9
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 1.3e-82 310.5 273 57.9
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 3.0e-82 309.3 241 61.8
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 5.1e-82 308.5 222 65.3
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.5e-81 307.0 242 61.6
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 4.3e-81 305.4 224 62.5
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 9.7e-81 304.3 249 59.8
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 2.2e-80 303.1 224 66.5
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.8e-80 302.8 323 51.7
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 2.8e-80 302.8 256 59.0
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 8.2e-80 301.2 282 53.9
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 9.1e-79 297.7 258 56.6
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.6e-78 296.2 331 49.2
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 6.5e-77 291.6 315 52.1
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 1.4e-76 290.4 335 49.3
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 7.2e-76 288.1 252 67.9
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.6e-75 287.0 187 72.2
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 1.8e-74 283.5 180 72.2
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 9.7e-73 277.7 247 57.5
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 1.7e-72 276.9 230 62.2
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 1.7e-72 276.9 224 59.4
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 6.3e-72 275.0 262 55.7
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 1.7e-69 266.9 169 72.8
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.6e-67 260.4 186 66.7
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 8.8e-66 254.6 250 54.8
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 1.5e-65 253.8 172 68.0
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 6.5e-61 238.4 166 66.9
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 2.1e-59 233.4 159 66.0
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 2.9e-53 213.0 249 43.8
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 1.5e-52 210.7 251 42.6
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 5.5e-52 208.8 210 48.1
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.3e-50 203.4 145 67.6
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 5.7e-49 198.7 212 44.8
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 1.7e-48 197.2 133 66.2
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 2.9e-45 186.4 198 47.0
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 9.8e-41 171.4 148 59.5
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 2.7e-38 163.3 119 66.4
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 1.4e-34 151.0 105 61.9
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 6.8e-34 148.7 87 82.8
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 1.2e-33 147.9 80 88.8
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 5.7e-33 145.6 80 88.8
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 5.9e-30 135.6 131 53.4
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 5.0e-29 132.5 189 36.0
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 2.2e-24 117.1 71 80.3
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 2.5e-20 103.6 263 30.0
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 6.2e-19 99.0 133 42.9
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 4.0e-18 96.3 84 59.5
Thhalv10029279m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 2.2e-16 90.5 60 81.7
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 2.9e-16 90.1 88 48.9
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 6.0e-14 82.4 83 49.4
PRCOL_00000045 Prasinoderma coloniale HOM05D005379 ORTHO05D006661 1.1e-10 71.6 214 26.6
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 5.2e-10 69.3 52 63.5
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 3.8e-08 63.2 37 70.3
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 2.4e-07 60.5 47 55.3
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 4.6e-06 56.2 33 78.8


User provided reference genes

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