Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20679 Brassica carinata HOM05D017681 ORTHO05D019883 3.3e-36 154.5 75 100.0
BcaC09g50327 Brassica carinata HOM05D017681 ORTHO05D019883 3.7e-35 151.0 75 97.3
BcaB07g31464 Brassica carinata HOM05D007126 ORTHO05D008974 7.5e-12 73.6 117 41.0
C09p17800 Brassica napus HOM05D007126 ORTHO05D008974 7.5e-12 73.6 117 41.0
BolC9t54678H Brassica oleracea HOM05D007126 ORTHO05D008974 7.5e-12 73.6 117 41.0
AT1G64430 Arabidopsis thaliana HOM05D007126 ORTHO05D008974 9.7e-12 73.2 117 40.2
BraA09t37117Z Brassica rapa HOM05D007126 ORTHO05D008974 9.7e-12 73.2 117 40.2
Thhalv10023389m.g Eutrema salsugineum HOM05D007126 ORTHO05D008974 9.7e-12 73.2 117 40.2
Aa31LG2G1430 Aethionema arabicum HOM05D007126 ORTHO05D008974 1.3e-11 72.8 115 40.9
BcaC04g22569 Brassica carinata HOM05D007126 ORTHO05D008974 1.7e-11 72.4 117 40.2
A09p14710 Brassica napus HOM05D007126 ORTHO05D008974 1.7e-11 72.4 117 40.2
Sp2g00310 Schrenkiella parvula HOM05D007126 ORTHO05D008974 1.7e-11 72.4 117 39.3
Hma1.2p1_0440F.1_g153360 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 2.2e-11 72.0 95 42.1
C09p40680 Brassica napus HOM05D017681 ORTHO05D019883 4.8e-11 70.9 41 85.4
CARHR046500 Cardamine hirsuta HOM05D007126 ORTHO05D008974 6.3e-11 70.5 117 38.5
AL2G10420 Arabidopsis lyrata HOM05D007126 ORTHO05D008974 1.1e-10 69.7 117 38.5
HanXRQChr17g0534861 Helianthus annuus HOM05D007126 ORTHO05D008974 1.4e-10 69.3 117 35.9
RcHm_v2.0_Chr7g0194681 Rosa chinensis HOM05D007126 ORTHO05D008974 1.4e-10 69.3 117 36.8
Cpa.g.sc79.28 Carica papaya HOM05D007126 ORTHO05D008974 1.8e-10 68.9 117 37.6
ECA246G3461 Erigeron canadensis HOM05D007126 ORTHO05D008974 1.8e-10 68.9 117 36.8
MELO3C016299.2 Cucumis melo HOM05D007126 ORTHO05D008974 2.4e-10 68.6 95 40.0
FvH4_5g04720 Fragaria vesca HOM05D007126 ORTHO05D008974 3.1e-10 68.2 117 36.8
Lsat_1_v5_gn_3_10920 Lactuca sativa HOM05D007126 ORTHO05D008974 3.1e-10 68.2 93 39.8
Aqoxy5G04057_Aqoxy5G04058 Aquilegia oxysepala HOM05D007126 ORTHO05D008974 9.1e-10 66.6 117 35.9
MD06G1108400 Malus domestica HOM05D007126 ORTHO05D008974 9.1e-10 66.6 117 35.9
Prupe.5G121000 Prunus persica HOM05D007126 ORTHO05D008974 9.1e-10 66.6 117 35.9
Hund11386 Selenicereus undatus HOM05D007126 ORTHO05D008974 9.1e-10 66.6 117 35.9
GSVIVG01019542001 Vitis vinifera HOM05D007126 ORTHO05D008974 9.1e-10 66.6 117 35.0
Atru.chr9.1971 Acer truncatum HOM05D007126 ORTHO05D008974 1.2e-09 66.2 117 35.0
Atru.chr9.1985 Acer truncatum HOM05D007126 ORTHO05D008974 1.2e-09 66.2 117 35.0
CiPaw.11G120500 Carya illinoinensis HOM05D007126 ORTHO05D008974 1.6e-09 65.9 117 35.9
BolC3t18186H Brassica oleracea HOM05D017681 ORTHO05D019883 2.0e-09 65.5 37 86.5
Medtr8g099525 Medicago truncatula HOM05D007126 ORTHO05D008974 2.0e-09 65.5 119 34.5
Psat7g210120 Pisum sativum HOM05D007126 ORTHO05D008974 2.0e-09 65.5 119 34.5
Potri.001G090800 Populus trichocarpa HOM05D007126 ORTHO05D008974 2.0e-09 65.5 117 35.9
CSS0001738 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 2.7e-09 65.1 117 33.3
CSS0007498 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 2.7e-09 65.1 117 33.3
Hma1.2p1_0440F.1_g153370 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 2.7e-09 65.1 117 34.2
Actinidia22167 Actinidia chinensis HOM05D007126 ORTHO05D008974 3.5e-09 64.7 117 33.3
CANSAT21G1075 Cannabis sativa HOM05D007126 ORTHO05D008974 3.5e-09 64.7 117 34.2
Cc08_g16150 Coffea canephora HOM05D007126 ORTHO05D008974 3.5e-09 64.7 119 33.6
EL10Ac5g12922 Beta vulgaris HOM05D007126 ORTHO05D008974 4.5e-09 64.3 117 31.6
Manes.01G047820 Manihot esculenta HOM05D007126 ORTHO05D008974 4.5e-09 64.3 115 34.8
Oeu009966.1 Olea europaea HOM05D007126 ORTHO05D008974 4.5e-09 64.3 125 32.8
PGR031G2002 Punica granatum HOM05D007126 ORTHO05D008974 4.5e-09 64.3 117 35.9
Sc22g0004970 Simmondsia chinensis HOM05D007126 ORTHO05D008974 5.9e-09 63.9 117 34.2
arahy.Tifrunner.gnm1.ann1.U3A0V6 Arachis hypogaea HOM05D007126 ORTHO05D008974 7.7e-09 63.5 113 35.4
Migut.A00631 Erythranthe guttata HOM05D007126 ORTHO05D008974 7.7e-09 63.5 117 32.5
Glyma.08G023000 Glycine max HOM05D007126 ORTHO05D008974 7.7e-09 63.5 117 33.3
Lj4g0010714 Lotus japonicus HOM05D007126 ORTHO05D008974 7.7e-09 63.5 117 34.2
Nitab4.5_0004010g0090 Nicotiana tabacum HOM05D007126 ORTHO05D008974 7.7e-09 63.5 118 34.7
Sabra01G0067000 Salix brachista HOM05D007126 ORTHO05D008974 7.7e-09 63.5 117 35.9
CAN.G390.5 Capsicum annuum HOM05D007126 ORTHO05D008974 1.0e-08 63.2 118 34.7
Potri.003G140800 Populus trichocarpa HOM05D007126 ORTHO05D008974 1.0e-08 63.2 119 34.5
Sed0013130 Sechium edule HOM05D007126 ORTHO05D008974 1.0e-08 63.2 117 35.0
C03p25470 Brassica napus HOM05D017681 ORTHO05D019883 1.3e-08 62.8 33 90.9
BraA02t08030Z Brassica rapa HOM05D017681 ORTHO05D019883 1.3e-08 62.8 33 90.9
CsaV3_4G006650 Cucumis sativus L. HOM05D007126 ORTHO05D008974 1.3e-08 62.8 117 33.3
Nn1g08439 Nelumbo nucifera HOM05D007126 ORTHO05D008974 1.3e-08 62.8 117 33.3
unitig_37.g12131 Utricularia gibba HOM05D007126 ORTHO05D008974 1.3e-08 62.8 117 33.3
ClCG07G011560 Citrullus lanatus HOM05D007126 ORTHO05D008974 1.7e-08 62.4 117 33.3
Peaxi162Scf00117g01130 Petunia axillaris HOM05D007126 ORTHO05D008974 2.2e-08 62.0 118 34.7
CDE08G1056 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 2.9e-08 61.6 116 33.6
AUR62019847 Chenopodium quinoa HOM05D007126 ORTHO05D008974 2.9e-08 61.6 125 28.0
DCAR_029908 Daucus carota HOM05D007126 ORTHO05D008974 2.9e-08 61.6 123 31.7
Solyc12g055940.3 Solanum lycopersicum HOM05D007126 ORTHO05D008974 3.8e-08 61.2 116 34.5
PGSC0003DMG400004995 Solanum tuberosum HOM05D007126 ORTHO05D008974 3.8e-08 61.2 116 34.5
TWI15G1063 Tripterygium wilfordii HOM05D007126 ORTHO05D008974 3.8e-08 61.2 117 35.0
AUR62010848 Chenopodium quinoa HOM05D007126 ORTHO05D008974 5.0e-08 60.8 117 29.9
VMungo0251G2926 Vigna mungo HOM05D007126 ORTHO05D008974 5.0e-08 60.8 117 34.2
Duzib205G0473 Durio zibethinus HOM05D007126 ORTHO05D008974 6.5e-08 60.5 117 34.2
Nitab4.5_0000726g0050 Nicotiana tabacum HOM05D007126 ORTHO05D008974 6.5e-08 60.5 118 33.9
PSO063G3961 Papaver somniferum HOM05D007126 ORTHO05D008974 6.5e-08 60.5 117 33.3
MBI06_g08479_MAGBIO Magnolia biondii HOM05D007126 ORTHO05D008974 1.1e-07 59.7 134 30.6
Lj2C166T10 Lonicera japonica HOM05D007126 ORTHO05D008974 1.5e-07 59.3 129 31.0
QL02p030251 Quercus lobata HOM05D007126 ORTHO05D008974 2.5e-07 58.5 136 30.1
Sopen12g024410 Solanum pennellii HOM05D007126 ORTHO05D008974 2.5e-07 58.5 114 34.2
C01p26610 Brassica napus HOM05D017681 ORTHO05D019883 3.2e-07 58.2 30 90.0
Lalb_Chr09g0332411 Lupinus albus HOM05D007126 ORTHO05D008974 4.2e-07 57.8 127 30.7
ATR0598G096 Amborella trichopoda HOM05D007126 ORTHO05D008974 5.5e-07 57.4 117 31.6
BcaC01g02861 Brassica carinata HOM05D003421 ORTHO05D003268 9.4e-07 56.6 29 89.7
Zm00001eb028190 Zea mays HOM05D007126 ORTHO05D008974 3.6e-06 54.7 117 29.9
arahy.Tifrunner.gnm1.ann1.GEY0M8 Arachis hypogaea HOM05D007126 ORTHO05D008974 6.1e-06 53.9 138 29.0


User provided reference genes

Program Settings