Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1575.8 831 100.0
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1571.2 832 99.9
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1568.5 832 99.6
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1547.3 835 98.0
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1545.8 833 98.2
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1541.9 833 98.2
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1504.6 833 95.1
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1502.3 837 94.6
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1493.8 837 93.9
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1492.6 837 93.9
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1491.5 837 94.0
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1488.0 837 94.0
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1483.0 835 93.8
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1480.7 836 93.5
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1434.1 837 90.3
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1416.7 838 87.9
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1290.4 838 80.0
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1287.3 841 78.7
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1287.3 835 79.9
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1285.4 841 79.2
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1285.4 835 79.5
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1279.2 840 78.5
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1274.2 837 79.0
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1272.7 841 78.4
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1268.8 840 78.0
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1267.3 840 77.7
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1265.4 839 77.0
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1264.2 835 78.7
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1260.7 840 77.4
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1260.7 836 77.4
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1260.4 838 77.6
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1260.4 837 77.8
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1258.0 835 78.3
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1257.7 839 77.6
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1256.9 840 76.8
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1256.9 837 77.3
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1255.4 835 78.0
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1251.5 840 77.9
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1251.1 839 77.2
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1250.7 841 76.8
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1246.9 840 77.6
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1244.6 841 76.6
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1236.5 859 75.4
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1233.4 840 75.7
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1230.7 838 75.3
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1228.8 838 75.8
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1227.6 838 76.5
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1227.2 838 75.5
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1226.1 839 76.2
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1221.1 839 75.7
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1219.5 841 75.4
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1219.5 838 75.8
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1217.2 929 69.9
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1216.1 839 75.9
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1213.7 831 75.9
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1213.0 840 75.0
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1212.2 839 75.7
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1210.7 839 75.7
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1209.1 848 73.9
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1206.8 839 75.4
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1206.4 839 75.0
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1206.0 839 74.3
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1202.6 840 74.9
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1197.6 841 73.1
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1195.3 835 75.6
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1192.9 838 73.5
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1191.8 843 73.4
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1189.5 834 74.0
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1189.1 836 74.2
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1183.3 839 72.3
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1180.6 841 73.2
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1179.9 839 72.2
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1179.1 837 73.4
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1178.3 836 73.0
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1174.8 841 72.4
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1174.8 850 72.7
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1171.8 850 72.8
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1171.4 838 72.9
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1165.2 834 72.9
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1163.3 832 71.9
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1159.4 839 71.4
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1157.9 858 71.0
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1155.6 841 70.9
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1154.4 858 70.7
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1151.7 838 70.4
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1138.6 839 70.0
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1138.3 807 73.6
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1131.7 840 69.9
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1117.4 858 69.0
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1110.1 858 70.2
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1108.2 839 69.5
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 0.0e+00 1099.3 725 79.2
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1093.6 745 75.3
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 0.0e+00 1090.1 841 69.3
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1085.1 1000 60.1
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 3.5e-304 1048.1 839 65.1
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 1.0e-287 993.4 833 65.4
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 4.1e-284 981.5 717 69.5
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 4.6e-280 968.0 541 94.3
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 4.6e-280 968.0 682 73.8
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 1.6e-264 916.4 621 80.4
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 3.7e-253 878.6 855 54.9
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 1.0e-247 860.5 853 54.5
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 2.1e-232 809.7 832 52.8
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 1.8e-228 796.6 518 77.4
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 8.1e-216 754.6 749 54.9
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 3.7e-213 745.7 546 70.5
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 3.6e-208 729.2 510 74.9
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 3.6e-208 729.2 612 63.1
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 1.2e-198 697.6 900 45.8
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 2.0e-182 643.7 554 62.8
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 8.7e-178 628.2 444 76.1
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 1.1e-177 627.9 424 78.5
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 2.6e-166 590.1 439 70.8
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 4.8e-152 542.7 343 80.2
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 2.0e-145 520.8 397 68.3
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 1.6e-142 511.1 293 92.5
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 3.6e-139 500.0 378 69.6
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 1.1e-124 451.8 235 98.7
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 2.2e-120 437.6 235 95.7
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.1e-119 435.3 372 64.2
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 1.3e-117 428.3 337 64.4
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 2.7e-102 377.5 428 51.6
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 5.8e-97 359.8 256 71.5
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 1.7e-96 358.2 854 30.7
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 2.3e-77 294.7 211 68.2
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 2.8e-75 287.7 854 27.3
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 7.6e-65 253.1 265 54.7
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 3.9e-61 240.7 200 64.5
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 1.3e-59 235.7 122 95.9
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.3e-59 235.7 232 61.6
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 4.5e-57 227.3 290 47.2
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 1.0e-56 226.1 176 68.8
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 4.5e-49 200.7 130 72.3
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 7.7e-49 199.9 209 59.8
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 3.8e-48 197.6 104 98.1
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 2.5e-47 194.9 104 97.1
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 7.4e-44 183.3 96 94.8
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 9.7e-44 183.0 96 96.9
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 5.3e-42 177.2 111 81.1
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 4.7e-38 164.1 105 82.9
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 3.7e-35 154.5 97 76.3
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 1.4e-34 152.5 95 78.9
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 6.5e-32 143.7 95 72.6
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 1.1e-28 132.9 95 70.5
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 2.0e-28 132.1 228 39.9
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 1.2e-25 122.9 130 50.8
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 6.5e-24 117.1 87 74.7
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 1.0e-21 109.8 145 46.2
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 3.0e-21 108.2 225 35.1
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 2.6e-20 105.1 220 34.5
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 3.3e-20 104.8 210 36.2
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 1.3e-19 102.8 82 64.6
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 3.7e-19 101.3 99 46.5
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 1.6e-17 95.9 70 65.7
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 2.2e-16 92.0 72 68.1
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 1.6e-14 85.9 78 64.1
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 7.0e-10 70.5 58 62.1
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 9.1e-10 70.1 158 33.5
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.1e-07 63.2 65 49.2
CAN.G689.5 Capsicum annuum HOM05D004547 ORTHO05D005133 2.1e-06 58.9 54 53.7


User provided reference genes

Program Settings