Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20665 Brassica carinata HOM05D006478 ORTHO05D008071 3.1e-85 318.5 172 100.0
C09p40820 Brassica napus HOM05D006478 ORTHO05D008071 3.1e-85 318.5 172 100.0
BolC9t56962H Brassica oleracea HOM05D006478 ORTHO05D008071 3.1e-85 318.5 172 100.0
A10p09440 Brassica napus HOM05D006478 ORTHO05D008071 4.1e-82 308.1 174 96.0
BraA10t43020Z Brassica rapa HOM05D006478 ORTHO05D008071 4.1e-82 308.1 174 96.0
BcaB08g35507 Brassica carinata HOM05D006478 ORTHO05D008071 4.6e-81 304.7 172 94.2
Sp6g13670 Schrenkiella parvula HOM05D006478 ORTHO05D008071 1.1e-74 283.5 172 89.5
Thhalv10014843m.g Eutrema salsugineum HOM05D006478 ORTHO05D008071 1.4e-69 266.5 170 84.7
CARHR264290 Cardamine hirsuta HOM05D006478 ORTHO05D008071 5.8e-68 261.2 169 83.4
AL8G25810 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 9.9e-68 260.4 169 82.2
AL64U10030 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 2.9e-67 258.8 169 81.7
Carub.0008s1155 Capsella rubella HOM05D006478 ORTHO05D008071 2.9e-67 258.8 172 82.0
AT5G51510 Arabidopsis thaliana HOM05D006478 ORTHO05D008071 8.4e-67 257.3 169 81.7
Aa31LG3G7930 Aethionema arabicum HOM05D006478 ORTHO05D008071 2.9e-59 232.3 198 67.7
THA.LOC104811518 Tarenaya hassleriana HOM05D006478 ORTHO05D008071 2.2e-51 206.1 170 66.5
Ciclev10006041m.g Citrus clementina HOM05D006478 ORTHO05D008071 1.2e-36 157.1 174 52.3
Atru.chr1.683 Acer truncatum HOM05D006478 ORTHO05D008071 5.5e-34 148.3 174 48.9
Dinv22954 Davidia involucrata HOM05D006478 ORTHO05D008071 5.1e-32 141.7 175 49.1
TWI23G1172 Tripterygium wilfordii HOM05D006478 ORTHO05D008071 6.7e-32 141.4 174 48.9
Potri.012G127100 Populus trichocarpa HOM05D006478 ORTHO05D008071 1.1e-31 140.6 174 48.3
CSS0007785 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 1.9e-31 139.8 176 48.9
CSS0006490 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 2.5e-31 139.4 176 48.9
MD07G1255100 Malus domestica HOM05D006478 ORTHO05D008071 3.3e-31 139.0 174 47.7
PGR042G2342 Punica granatum HOM05D006478 ORTHO05D008071 4.3e-31 138.7 172 49.4
Manes.14G035000 Manihot esculenta HOM05D006478 ORTHO05D008071 9.7e-31 137.5 174 50.0
Prupe.2G278900 Prunus persica HOM05D006478 ORTHO05D008071 9.7e-31 137.5 174 47.1
CsaV3_3G016200 Cucumis sativus L. HOM05D006478 ORTHO05D008071 1.6e-30 136.7 174 48.3
Dinv28557 Davidia involucrata HOM05D000120 ORTHO05D000068 2.2e-30 136.3 164 49.4
RcHm_v2.0_Chr4g0413311 Rosa chinensis HOM05D006478 ORTHO05D008071 3.7e-30 135.6 174 44.3
GSVIVG01018613001 Vitis vinifera HOM05D006478 ORTHO05D008071 3.7e-30 135.6 175 48.6
Actinidia31787 Actinidia chinensis HOM05D006478 ORTHO05D008071 4.8e-30 135.2 175 45.7
MELO3C006818.2 Cucumis melo HOM05D006478 ORTHO05D008071 8.2e-30 134.4 174 47.7
Sabra12G0096300 Salix brachista HOM05D006478 ORTHO05D008071 8.2e-30 134.4 174 46.6
Atru.chr12.858 Acer truncatum HOM05D006478 ORTHO05D008071 1.1e-29 134.0 124 56.5
CANSAT56G4273 Cannabis sativa HOM05D006478 ORTHO05D008071 1.4e-29 133.7 174 44.8
DCAR_018100 Daucus carota HOM05D006478 ORTHO05D008071 1.4e-29 133.7 174 44.3
FAN12G3923 Fragaria x ananassa HOM05D006478 ORTHO05D008071 6.9e-29 131.3 174 43.7
CiPaw.04G061000 Carya illinoinensis HOM05D006478 ORTHO05D008071 2.0e-28 129.8 174 45.4
Sed0002492 Sechium edule HOM05D006478 ORTHO05D008071 2.6e-28 129.4 174 47.7
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 3.4e-28 129.0 174 46.0
QL09p018992 Quercus lobata HOM05D006478 ORTHO05D008071 4.5e-28 128.6 171 47.4
DCAR_028724 Daucus carota HOM05D006478 ORTHO05D008071 5.9e-28 128.3 176 43.8
FAN17G1857 Fragaria x ananassa HOM05D006478 ORTHO05D008071 1.0e-27 127.5 174 42.5
FvH4_4g13180 Fragaria vesca HOM05D006478 ORTHO05D008071 1.3e-27 127.1 174 42.5
Os10g0508600 Oryza sativa ssp. japonica HOM05D006478 ORTHO05D008071 2.2e-27 126.3 173 43.4
EL10Ac3g05828 Beta vulgaris HOM05D006478 ORTHO05D008071 5.0e-27 125.2 176 44.9
AUR62002188 Chenopodium quinoa HOM05D006478 ORTHO05D008071 6.5e-27 124.8 177 43.5
Hma1.2p1_0146F.1_g065730 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 1.1e-26 124.0 180 44.4
Cc07_g16780 Coffea canephora HOM05D006478 ORTHO05D008071 1.4e-26 123.6 163 44.2
Nitab4.5_0001383g0120 Nicotiana tabacum HOM05D006478 ORTHO05D008071 5.5e-26 121.7 163 44.8
SalBow5G3546 Salvia bowleyana HOM05D006478 ORTHO05D008071 9.3e-26 120.9 176 43.8
AUR62015523 Chenopodium quinoa HOM05D006478 ORTHO05D008071 1.2e-25 120.6 177 42.9
Nn6g34073 Nelumbo nucifera HOM05D006478 ORTHO05D008071 1.2e-25 120.6 179 45.3
SalBow5G4313 Salvia bowleyana HOM05D006478 ORTHO05D008071 1.6e-25 120.2 176 44.3
Migut.O00298 Erythranthe guttata HOM05D006478 ORTHO05D008071 2.1e-25 119.8 172 43.0
vmacro09898 Vaccinium macrocarpon HOM05D006478 ORTHO05D008071 2.1e-25 119.8 166 45.2
Eucgr.A02884 Eucalyptus grandis HOM05D006478 ORTHO05D008071 4.6e-25 118.6 174 44.3
HanXRQChr13g0420601 Helianthus annuus HOM05D006478 ORTHO05D008071 4.6e-25 118.6 172 39.0
CAN.G645.17 Capsicum annuum HOM05D006478 ORTHO05D008071 7.9e-25 117.9 169 42.6
Cfa008204 Carpinus fangiana HOM05D006478 ORTHO05D008071 1.0e-24 117.5 174 44.8
MSTRG.8414 Avicennia marina HOM05D006478 ORTHO05D008071 1.3e-24 117.1 174 42.0
Lsat_1_v5_gn_8_8920 Lactuca sativa HOM05D006478 ORTHO05D008071 1.8e-24 116.7 172 41.9
Zm00001eb043910 Zea mays HOM05D006478 ORTHO05D008071 1.8e-24 116.7 170 40.6
Sopen11g002780 Solanum pennellii HOM05D006478 ORTHO05D008071 5.1e-24 115.2 169 40.8
ECA233G2919 Erigeron canadensis HOM05D006478 ORTHO05D008071 8.7e-24 114.4 172 37.2
ECA247G1821 Erigeron canadensis HOM05D006478 ORTHO05D008071 1.9e-23 113.2 170 38.2
PSO782G1599 Papaver somniferum HOM05D006478 ORTHO05D008071 2.5e-23 112.8 164 41.5
FAN07G1397 Fragaria x ananassa HOM05D006478 ORTHO05D008071 5.7e-23 111.7 124 46.8
TPR.G3657 Trifolium pratense HOM05D006478 ORTHO05D008071 5.7e-23 111.7 182 42.9
PSO170G1682 Papaver somniferum HOM05D006478 ORTHO05D008071 9.7e-23 110.9 164 40.2
TAR629G1779 Trochodendron aralioides HOM05D006478 ORTHO05D008071 1.3e-22 110.5 124 50.0
Psat2g100400 Pisum sativum HOM05D006478 ORTHO05D008071 2.2e-22 109.8 182 40.1
Ca_03612_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 1.1e-21 107.5 186 39.8
Phvul.011G177900 Phaseolus vulgaris HOM05D006478 ORTHO05D008071 1.1e-21 107.5 181 39.8
Sc19g0001980 Simmondsia chinensis HOM05D006478 ORTHO05D008071 1.1e-21 107.5 167 40.7
Gohir.D01G083500 Gossypium hirsutum HOM05D006478 ORTHO05D008071 1.8e-21 106.7 172 41.9
Gorai.002G109200 Gossypium raimondii HOM05D006478 ORTHO05D008071 1.8e-21 106.7 172 41.9
Lalb_Chr19g0140371 Lupinus albus HOM05D006478 ORTHO05D008071 1.8e-21 106.7 182 38.5
Psat3g066720 Pisum sativum HOM05D006478 ORTHO05D008071 2.4e-21 106.3 181 39.8
Thecc.07G184100 Theobroma cacao HOM05D006478 ORTHO05D008071 2.4e-21 106.3 172 38.4
HPP92_021027 Vanilla planifolia HOM05D006478 ORTHO05D008071 2.4e-21 106.3 170 40.0
Duzib213G0671 Durio zibethinus HOM05D006478 ORTHO05D008071 3.1e-21 105.9 174 41.4
SGA_v2.0_scaffold10G05491 Striga asiatica HOM05D006478 ORTHO05D008071 4.1e-21 105.5 171 40.4
Peaxi162Scf00241g00526 Petunia axillaris HOM05D006478 ORTHO05D008071 5.3e-21 105.1 147 42.9
Glyma.18G235100 Glycine max HOM05D006478 ORTHO05D008071 6.9e-21 104.8 182 37.4
Medtr3g075310 Medicago truncatula HOM05D006478 ORTHO05D008071 6.9e-21 104.8 181 40.9
Gohir.A01G099000 Gossypium hirsutum HOM05D006478 ORTHO05D008071 1.2e-20 104.0 172 40.1
Glyma.09G257500 Glycine max HOM05D006478 ORTHO05D008071 1.5e-20 103.6 124 43.5
Lj6g0019546 Lotus japonicus HOM05D006478 ORTHO05D008071 2.0e-20 103.2 180 37.2
arahy.Tifrunner.gnm1.ann1.R2ZWGQ Arachis hypogaea HOM05D006478 ORTHO05D008071 2.6e-20 102.8 182 37.4
ATR0049G082 Amborella trichopoda HOM05D006478 ORTHO05D008071 6.5e-19 98.2 111 46.8
CDE02G0477 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 1.1e-18 97.4 121 41.3
CDE11G0941 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 1.4e-18 97.1 116 44.0
Hma1.2p1_0654F.1_g196670 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 1.4e-18 97.1 177 36.2
arahy.Tifrunner.gnm1.ann1.LW4644 Arachis hypogaea HOM05D006478 ORTHO05D008071 3.2e-18 95.9 118 44.9
PGSC0003DMG400023983 Solanum tuberosum HOM05D006478 ORTHO05D008071 1.0e-16 90.9 172 38.4
Aqoxy3G03162 Aquilegia oxysepala HOM05D006478 ORTHO05D008071 1.5e-15 87.0 173 32.4
Rhsim09G0192300 Rhododendron simsii HOM05D006478 ORTHO05D008071 1.5e-15 87.0 125 44.0
Haze_13851 Corylus avellana HOM05D006478 ORTHO05D008071 2.6e-15 86.3 174 39.1
Mapoly0022s0103 Marchantia polymorpha HOM05D006478 ORTHO05D008071 3.4e-12 75.9 178 31.5
Manes.03G110816 Manihot esculenta HOM05D006478 ORTHO05D008071 2.9e-11 72.8 47 80.9
unitig_8.g3700 Utricularia gibba HOM05D006478 ORTHO05D008071 8.5e-11 71.2 145 33.1
Ca_10075_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 3.2e-10 69.3 85 45.9
CBR_g39926 Chara braunii HOM05D006478 ORTHO05D008071 2.1e-09 66.6 191 33.0
Hund04605 Selenicereus undatus HOM05D006478 ORTHO05D008071 2.1e-09 66.6 133 36.1
Pp3c3_28350 Physcomitrium patens HOM05D006478 ORTHO05D008071 2.3e-08 63.2 171 26.3
Aqoxy3G03161 Aquilegia oxysepala HOM05D006478 ORTHO05D008071 2.0e-07 60.1 148 29.7
Sed0011118 Sechium edule HOM05D006478 ORTHO05D008071 2.0e-07 60.1 174 32.2
CAN.G1338.3 Capsicum annuum HOM05D006478 ORTHO05D008071 2.6e-07 59.7 126 31.7
RcHm_v2.0_Chr4g0409771 Rosa chinensis HOM05D006478 ORTHO05D008071 2.6e-07 59.7 108 34.3
Prupe.2G279400 Prunus persica HOM05D006478 ORTHO05D008071 7.4e-07 58.2 77 40.3
Solyc11g006880.3 Solanum lycopersicum HOM05D006478 ORTHO05D008071 2.8e-06 56.2 114 30.7


User provided reference genes

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