Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20647 Brassica carinata HOM05D004896 ORTHO05D006447 6.8e-60 233.8 118 100.0
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 3.9e-55 218.0 114 95.6
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 6.6e-55 217.2 114 94.7
A04p13700 Brassica napus HOM05D004896 ORTHO05D006447 2.1e-40 169.1 89 93.3
BraA04t17030Z Brassica rapa HOM05D004896 ORTHO05D006447 2.1e-40 169.1 89 93.3
C04p47490 Brassica napus HOM05D004896 ORTHO05D006447 3.5e-40 168.3 89 93.3
BolC4t26350H Brassica oleracea HOM05D004896 ORTHO05D006447 3.5e-40 168.3 89 93.3
BcaB06g27542 Brassica carinata HOM05D004896 ORTHO05D006447 3.6e-37 158.3 90 90.0
AT5G40660 Arabidopsis thaliana HOM05D004896 ORTHO05D006447 1.2e-35 153.3 89 86.5
CARHR261290 Cardamine hirsuta HOM05D004896 ORTHO05D006447 1.2e-35 153.3 89 85.4
AL7G49080 Arabidopsis lyrata HOM05D004896 ORTHO05D006447 9.9e-35 150.2 92 82.6
Carub.0007s3482 Capsella rubella HOM05D004896 ORTHO05D006447 1.3e-34 149.8 87 83.9
Thhalv10027828m.g Eutrema salsugineum HOM05D004896 ORTHO05D006447 3.2e-33 145.2 77 90.9
Sp7g01200 Schrenkiella parvula HOM05D004896 ORTHO05D006447 3.2e-33 145.2 77 92.2
Aa31LG9G960 Aethionema arabicum HOM05D004896 ORTHO05D006447 2.1e-32 142.5 78 88.5
BraA05t20477Z Brassica rapa HOM05D004896 ORTHO05D024046 1.2e-29 133.3 71 85.9
THA.LOC104825307 Tarenaya hassleriana HOM05D004896 ORTHO05D006447 2.1e-29 132.5 88 78.4
MELO3C014823.2 Cucumis melo HOM05D004896 ORTHO05D006447 2.0e-27 125.9 101 65.3
Cpa.g.sc130.54 Carica papaya HOM05D004896 ORTHO05D006447 3.4e-27 125.2 86 73.3
Sed0025595 Sechium edule HOM05D004896 ORTHO05D006447 1.7e-26 122.9 101 65.3
Glyma.16G066000 Glycine max HOM05D004896 ORTHO05D006447 1.9e-25 119.4 87 71.3
Ca_03861_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 3.2e-25 118.6 89 68.5
CsaV3_3G027540 Cucumis sativus L. HOM05D004896 ORTHO05D006447 7.1e-25 117.5 101 62.4
GSVIVG01003974001 Vitis vinifera HOM05D004896 ORTHO05D006447 7.1e-25 117.5 87 67.8
ClCG05G013000 Citrullus lanatus HOM05D004896 ORTHO05D006447 1.6e-24 116.3 104 64.4
Phvul.008G145713 Phaseolus vulgaris HOM05D004896 ORTHO05D006447 1.6e-24 116.3 85 71.8
TAR629G1306 Trochodendron aralioides HOM05D004896 ORTHO05D006447 1.6e-24 116.3 95 66.3
Manes.15G155100 Manihot esculenta HOM05D004896 ORTHO05D006447 2.1e-24 115.9 93 67.7
Medtr0018s0290 Medicago truncatula HOM05D004896 ORTHO05D006447 2.1e-24 115.9 89 64.0
PGR142G1575 Punica granatum HOM05D004896 ORTHO05D006447 2.1e-24 115.9 102 59.8
TPR.G1112 Trifolium pratense HOM05D004896 ORTHO05D006447 2.1e-24 115.9 83 69.9
Ca_01399_v3 Cicer arietinum L. HOM05D004896 ORTHO05D006447 2.7e-24 115.5 89 67.4
Psat3g168560 Pisum sativum HOM05D004896 ORTHO05D006447 2.7e-24 115.5 89 66.3
VMungo1080G0372 Vigna mungo HOM05D004896 ORTHO05D006447 2.7e-24 115.5 88 68.2
RcHm_v2.0_Chr2g0173821 Rosa chinensis HOM05D004896 ORTHO05D006447 3.5e-24 115.2 101 60.4
Eucgr.I01701 Eucalyptus grandis HOM05D004896 ORTHO05D006447 1.7e-23 112.8 72 76.4
Lj1g0027814 Lotus japonicus HOM05D004896 ORTHO05D006447 2.3e-23 112.5 84 70.2
Atru.chr11.190 Acer truncatum HOM05D004896 ORTHO05D006447 3.0e-23 112.1 103 60.2
Aqoxy1G02023 Aquilegia oxysepala HOM05D004896 ORTHO05D006447 3.0e-23 112.1 97 64.9
FAN09G1675 Fragaria x ananassa HOM05D004896 ORTHO05D006447 3.0e-23 112.1 107 57.9
CANSAT64G0177 Cannabis sativa HOM05D004896 ORTHO05D006447 3.9e-23 111.7 100 61.0
CAN.G473.48 Capsicum annuum HOM05D004896 ORTHO05D006447 3.9e-23 111.7 96 62.5
Ciclev10015882m.g Citrus clementina HOM05D004896 ORTHO05D006447 3.9e-23 111.7 101 60.4
COL.COLO4_29242 Corchorus olitorius HOM05D004896 ORTHO05D006447 3.9e-23 111.7 95 63.2
FvH4_6g52290 Fragaria vesca HOM05D004896 ORTHO05D006447 3.9e-23 111.7 107 57.9
FAN05G4015 Fragaria x ananassa HOM05D004896 ORTHO05D006447 3.9e-23 111.7 108 55.6
FAN14G4168 Fragaria x ananassa HOM05D004896 ORTHO05D006447 3.9e-23 111.7 107 57.9
Gohir.A05G342400 Gossypium hirsutum HOM05D004896 ORTHO05D006447 3.9e-23 111.7 95 63.2
Gohir.D04G080440 Gossypium hirsutum HOM05D004896 ORTHO05D006447 3.9e-23 111.7 95 63.2
Gorai.012G091200 Gossypium raimondii HOM05D004896 ORTHO05D006447 3.9e-23 111.7 95 63.2
MD09G1019000 Malus domestica HOM05D004896 ORTHO05D006447 3.9e-23 111.7 99 62.6
arahy.Tifrunner.gnm1.ann1.10VWGS Arachis hypogaea HOM05D004896 ORTHO05D006447 6.6e-23 110.9 70 78.6
arahy.Tifrunner.gnm1.ann1.5ILH08 Arachis hypogaea HOM05D004896 ORTHO05D006447 6.6e-23 110.9 70 78.6
FAN02G3298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 6.6e-23 110.9 107 57.9
Hund14985 Selenicereus undatus HOM05D004896 ORTHO05D006447 1.5e-22 109.8 87 65.5
Dinv33394 Davidia involucrata HOM05D004896 ORTHO05D006447 1.9e-22 109.4 96 60.4
Nitab4.5_0002158g0160 Nicotiana tabacum HOM05D004896 ORTHO05D006447 1.9e-22 109.4 98 61.2
Nitab4.5_0002158g0260 Nicotiana tabacum HOM05D002474 ORTHO05D007142 2.5e-22 109.0 98 61.2
Lj7A604T65 Lonicera japonica HOM05D004896 ORTHO05D006447 3.3e-22 108.6 100 60.0
Nn5g27187 Nelumbo nucifera HOM05D004896 ORTHO05D006447 4.3e-22 108.2 99 60.6
MBI19_g04325_MAGBIO Magnolia biondii HOM05D004896 ORTHO05D006447 5.6e-22 107.8 93 62.4
Solyc02g093690.3 Solanum lycopersicum HOM05D004896 ORTHO05D006447 5.6e-22 107.8 91 60.4
Duzib264G0232 Durio zibethinus HOM05D004896 ORTHO05D006447 7.3e-22 107.5 99 59.6
Rhsim08G0046600 Rhododendron simsii HOM05D004896 ORTHO05D006447 7.3e-22 107.5 77 67.5
Haze_14796 Corylus avellana HOM05D004896 ORTHO05D006447 9.6e-22 107.1 90 66.7
QL02p073334 Quercus lobata HOM05D004896 ORTHO05D006447 9.6e-22 107.1 96 60.4
CSS0017957 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 1.3e-21 106.7 96 60.4
CSS0036459 Camellia sinensis var. sinensis HOM05D004896 ORTHO05D006447 1.3e-21 106.7 96 60.4
Sabra16G0218900 Salix brachista HOM05D004896 ORTHO05D006447 1.3e-21 106.7 101 59.4
Ah.12g059440 Amaranthus hybridus HOM05D004896 ORTHO05D006447 1.6e-21 106.3 89 62.9
Hma1.2p1_1484F.1_g286430 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 1.6e-21 106.3 94 60.6
Lalb_Chr14g0362991 Lupinus albus HOM05D004896 ORTHO05D006447 1.6e-21 106.3 76 68.4
Sc03g0007130 Simmondsia chinensis HOM05D004896 ORTHO05D006447 1.6e-21 106.3 73 69.9
PGSC0003DMG400012644 Solanum tuberosum HOM05D004896 ORTHO05D006447 1.6e-21 106.3 103 57.3
Sopen02g038330 Solanum pennellii HOM05D004896 ORTHO05D006447 2.1e-21 105.9 106 55.7
Atru.chr6.2473 Acer truncatum HOM05D004896 ORTHO05D006447 2.8e-21 105.5 105 58.1
Thecc.04G026600 Theobroma cacao HOM05D004896 ORTHO05D006447 2.8e-21 105.5 99 59.6
Actinidia18427 Actinidia chinensis HOM05D004896 ORTHO05D006447 3.6e-21 105.1 107 55.1
Nitab4.5_0001031g0180 Nicotiana tabacum HOM05D004896 ORTHO05D006447 3.6e-21 105.1 98 59.2
HPP92_020467 Vanilla planifolia HOM05D004896 ORTHO05D006447 3.6e-21 105.1 100 57.0
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 4.8e-21 104.8 75 72.0
Cfa007299 Carpinus fangiana HOM05D004896 ORTHO05D006447 4.8e-21 104.8 90 64.4
Potri.001G338200 Populus trichocarpa HOM05D004896 ORTHO05D006447 4.8e-21 104.8 101 60.4
Hma1.2p1_1407F.1_g281400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 6.2e-21 104.4 97 57.7
Atru.chr7.121 Acer truncatum HOM05D005216 ORTHO05D006453 8.1e-21 104.0 103 58.3
ECA246G3787 Erigeron canadensis HOM05D004896 ORTHO05D006447 8.1e-21 104.0 89 59.6
Migut.H00045 Erythranthe guttata HOM05D004896 ORTHO05D006447 1.1e-20 103.6 96 58.3
Prupe.3G298100 Prunus persica HOM05D004896 ORTHO05D006447 1.1e-20 103.6 57 84.2
ATR0099G063 Amborella trichopoda HOM05D004896 ORTHO05D006447 1.4e-20 103.2 55 83.6
DCAR_021752 Daucus carota HOM05D004896 ORTHO05D006447 1.4e-20 103.2 90 60.0
SHI03827 Sapria himalayana HOM05D004896 ORTHO05D006447 1.8e-20 102.8 89 61.8
EL10Ac5g10496 Beta vulgaris HOM05D004896 ORTHO05D006447 3.1e-20 102.1 89 58.4
Hma1.2p1_1484F.1_g286400 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 3.1e-20 102.1 97 56.7
RcHm_v2.0_Chr2g0174241 Rosa chinensis HOM05D004896 ORTHO05D006447 3.1e-20 102.1 93 61.3
TWI56G0223 Tripterygium wilfordii HOM05D004896 ORTHO05D006447 4.0e-20 101.7 95 57.9
MSTRG.3120 Avicennia marina HOM05D004896 ORTHO05D006447 5.3e-20 101.3 95 56.8
CDE07G0249 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 5.3e-20 101.3 56 83.9
AUR62030692 Chenopodium quinoa HOM05D004896 ORTHO05D006447 5.3e-20 101.3 52 90.4
AUR62030697 Chenopodium quinoa HOM05D004896 ORTHO05D006447 5.3e-20 101.3 52 90.4
AUR62036338 Chenopodium quinoa HOM05D004896 ORTHO05D006447 5.3e-20 101.3 52 90.4
SGA_v2.0_scaffold135G34930 Striga asiatica HOM05D004896 ORTHO05D006447 6.9e-20 100.9 89 58.4
EL10Ac9g21007 Beta vulgaris HOM05D004896 ORTHO05D006447 9.0e-20 100.5 89 57.3
CiPaw.04G032200 Carya illinoinensis HOM05D004896 ORTHO05D006447 9.0e-20 100.5 102 58.8
BcaB01g05885 Brassica carinata HOM05D004896 ORTHO05D024046 2.0e-19 99.4 50 92.0
Hma1.2p1_0383F.1_g140290 Hydrangea macrophylla HOM05D004896 ORTHO05D006447 2.0e-19 99.4 97 55.7
Lsat_1_v5_gn_0_30781 Lactuca sativa HOM05D004896 ORTHO05D006447 2.6e-19 99.0 70 70.0
Actinidia16947 Actinidia chinensis HOM05D004896 ORTHO05D006447 3.4e-19 98.6 80 61.2
Atru.chr3.2666 Acer truncatum HOM05D004896 ORTHO05D006447 4.5e-19 98.2 86 60.5
Atru.chr4.450 Acer truncatum HOM05D004896 ORTHO05D006447 5.8e-19 97.8 85 61.2
FAN14G0298 Fragaria x ananassa HOM05D004896 ORTHO05D006447 7.6e-19 97.4 93 57.0
vmacro18309 Vaccinium macrocarpon HOM05D004896 ORTHO05D006447 7.6e-19 97.4 52 84.6
PSO541G0959 Papaver somniferum HOM05D004896 ORTHO05D006447 9.9e-19 97.1 94 56.4
PSO675G8471 Papaver somniferum HOM05D004896 ORTHO05D006447 9.9e-19 97.1 78 64.1
A05p15620 Brassica napus HOM05D004896 ORTHO05D024046 1.3e-18 96.7 48 93.8
HPP92_026167 Vanilla planifolia HOM05D004896 ORTHO05D006447 1.3e-18 96.7 51 86.3
FvH4_6g52310 Fragaria vesca HOM05D004896 ORTHO05D006447 2.2e-18 95.9 64 73.4
Atru.chr2.3725 Acer truncatum HOM05D004896 ORTHO05D006447 2.9e-18 95.5 64 75.0
HanXRQChr17g0549471 Helianthus annuus HOM05D004896 ORTHO05D006447 2.9e-18 95.5 74 66.2
Cc07_g00300 Coffea canephora HOM05D004896 ORTHO05D006447 4.9e-18 94.7 53 81.1
CDE12G0511 Ceratophyllum demersum HOM05D004896 ORTHO05D006447 6.4e-18 94.4 96 54.2
Zm00001eb329190 Zea mays HOM05D004896 ORTHO05D006447 6.4e-18 94.4 57 75.4
Atru.chr1.36 Acer truncatum HOM05D004896 ORTHO05D006447 1.1e-17 93.6 64 73.4
CiPaw.03G049000 Carya illinoinensis HOM05D004896 ORTHO05D006447 1.4e-17 93.2 104 54.8
unitig_0.g536 Utricularia gibba HOM05D004896 ORTHO05D006447 1.9e-17 92.8 74 62.2
Atru.chr2.563 Acer truncatum HOM05D004866 ORTHO05D005716 2.4e-17 92.4 64 73.4
Oeu064389.1 Olea europaea HOM05D004896 ORTHO05D006447 2.4e-17 92.4 95 54.7
BcaC01g04583 Brassica carinata HOM05D004896 ORTHO05D006447 4.2e-17 91.7 48 91.7
Os07g0644000 Oryza sativa ssp. japonica HOM05D004896 ORTHO05D006447 4.2e-17 91.7 57 71.9
Atru.chr1.2050 Acer truncatum HOM05D004896 ORTHO05D006447 7.1e-17 90.9 80 61.2
SGA_v2.0_scaffold18G08247 Striga asiatica HOM05D004896 ORTHO05D006447 7.1e-17 90.9 89 56.2
Peaxi162Scf00420g00251 Petunia axillaris HOM05D004896 ORTHO05D006447 2.3e-15 85.9 119 47.1
SEGI_10618 Sequoiadendron giganteum HOM05D004896 ORTHO05D006447 3.3e-14 82.0 73 54.8
Pp3c2_19250 Physcomitrium patens HOM05D004896 ORTHO05D006447 4.2e-09 65.1 68 44.1
AagrBONN_evm.TU.Sc2ySwM_362.2811 Anthoceros agrestis HOM05D004896 ORTHO05D006447 5.1e-07 58.2 51 45.1


User provided reference genes

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