Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1855.1 932 100.0
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 0.0e+00 1841.2 957 97.4
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1810.8 959 95.7
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 0.0e+00 1810.8 959 95.7
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1693.3 938 91.9
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 0.0e+00 1517.3 971 81.6
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 0.0e+00 1499.2 964 80.8
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1497.6 964 80.7
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 0.0e+00 1475.7 973 80.0
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 0.0e+00 1456.4 976 78.1
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 0.0e+00 1452.6 963 78.5
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1447.2 963 78.4
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 0.0e+00 1433.7 978 77.5
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 0.0e+00 1432.9 978 77.6
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 0.0e+00 1422.1 975 76.3
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1382.5 963 75.9
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1224.2 656 96.2
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 1.2e-300 1036.6 859 62.2
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 7.1e-261 904.4 928 54.3
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 2.1e-260 902.9 972 52.2
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 9.5e-258 894.0 1006 50.0
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 1.8e-256 889.8 1043 50.4
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 5.2e-256 888.3 1018 50.7
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 3.4e-255 885.6 916 53.1
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 2.4e-253 879.4 1032 49.6
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 3.2e-253 879.0 995 51.8
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 4.1e-253 878.6 1041 49.4
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 3.9e-251 872.1 1005 50.0
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 3.3e-250 869.0 1027 49.5
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 7.3e-250 867.8 1049 48.7
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 8.1e-249 864.4 970 50.8
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 1.1e-248 864.0 937 51.1
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 4.0e-248 862.1 942 51.4
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 5.2e-248 861.7 945 51.0
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 9.0e-248 860.9 1015 49.4
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 9.0e-248 860.9 990 50.1
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 3.4e-247 859.0 992 51.2
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 4.4e-247 858.6 953 51.7
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 5.8e-247 858.2 958 50.3
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 1.3e-246 857.1 959 51.5
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.9e-246 855.9 1015 49.2
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 4.9e-246 855.1 1000 50.4
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 8.4e-246 854.4 1015 49.1
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 8.4e-246 854.4 974 50.9
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 1.4e-245 853.6 1020 48.9
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 1.9e-245 853.2 976 51.0
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 4.6e-244 848.6 1026 48.2
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 7.8e-244 847.8 1011 48.6
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 1.3e-243 847.0 947 49.7
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 1.7e-243 846.7 944 51.1
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 3.0e-243 845.9 944 51.0
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 3.9e-243 845.5 1029 49.3
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 6.6e-243 844.7 987 48.9
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 6.6e-243 844.7 956 50.2
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 1.6e-241 840.1 889 52.4
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 2.8e-241 839.3 940 50.3
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 1.4e-240 837.0 1040 47.7
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 1.8e-240 836.6 1032 48.8
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 5.3e-240 835.1 1012 49.4
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 6.9e-240 834.7 1002 48.6
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 1.2e-239 833.9 971 49.6
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 2.6e-239 832.8 870 51.3
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 2.6e-239 832.8 1011 48.5
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 3.4e-239 832.4 1037 48.0
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 1.9e-237 826.6 968 49.0
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 4.6e-236 822.0 867 51.6
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 2.3e-235 819.7 1032 47.0
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 3.0e-235 819.3 915 50.5
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 3.9e-235 818.9 870 51.3
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 3.9e-235 818.9 866 51.7
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 2.5e-234 816.2 915 50.4
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 9.0e-232 807.7 958 46.7
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 1.5e-231 807.0 971 48.5
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 9.9e-231 804.3 958 49.3
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 1.1e-229 800.8 1000 47.8
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.3e-227 793.1 1018 46.8
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 2.5e-226 789.6 977 46.9
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 3.3e-226 789.3 1023 46.0
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 6.2e-225 785.0 889 50.3
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 3.8e-222 775.8 971 46.8
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 1.2e-220 770.8 954 47.8
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 5.7e-218 761.9 860 49.9
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 9.7e-218 761.1 1032 43.5
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 3.7e-217 759.2 972 47.0
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 2.6e-215 753.1 856 47.5
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 4.5e-215 752.3 947 47.8
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 2.1e-212 743.4 852 49.5
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 7.9e-212 741.5 849 48.6
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 1.7e-209 733.8 837 48.7
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 1.4e-208 730.7 1037 42.3
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 1.7e-206 723.8 842 47.7
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 6.5e-206 721.8 878 46.8
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 2.5e-205 719.9 906 46.5
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 3.3e-202 709.5 1014 44.1
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 1.4e-200 704.1 836 46.4
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.6e-196 690.6 792 48.5
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 3.7e-193 679.5 609 57.0
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 2.4e-192 676.8 920 44.8
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 2.2e-185 653.7 774 48.3
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 1.8e-184 650.6 956 42.1
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 1.2e-170 604.7 706 46.2
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 7.5e-162 575.5 538 54.5
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 2.2e-161 573.9 550 53.8
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 1.6e-159 567.8 615 50.2
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 3.0e-158 563.5 547 53.6
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 6.8e-147 525.8 398 66.8
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 9.9e-114 415.6 470 46.2
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 5.3e-107 393.3 400 51.8
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 1.6e-87 328.6 484 45.0
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 3.6e-71 274.2 502 39.0
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 1.7e-65 255.4 409 44.0
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 2.1e-39 168.7 304 33.9
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 8.0e-39 166.8 735 24.6
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 4.0e-38 164.5 326 32.2
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.3e-36 159.5 328 32.3
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 4.9e-36 157.5 326 31.9
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 4.9e-36 157.5 326 31.9
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 2.4e-35 155.2 169 53.3
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 7.8e-34 150.2 154 46.8
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 3.3e-32 144.8 194 45.4
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.4e-30 139.4 476 28.4
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.3e-28 132.9 326 30.7
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 2.8e-23 115.2 379 29.3
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.5e-16 92.0 337 27.6
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.3e-16 91.3 324 27.8
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 5.8e-13 80.9 56 73.2
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.3e-12 79.7 111 40.5
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 7.9e-10 70.5 117 30.8
Mapoly0001s0312 Marchantia polymorpha HOM05D029505 ORTHO05D006869 8.7e-09 67.0 132 33.3
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 7.3e-08 63.9 88 45.5
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 3.6e-07 61.6 344 23.3
TWI75G0641 Tripterygium wilfordii HOM05D002537 ORTHO05D002751 1.4e-06 59.7 142 32.4
DCAR_000127 Daucus carota HOM05D002537 ORTHO05D002751 6.9e-06 57.4 116 30.2
DCAR_024631 Daucus carota HOM05D002537 ORTHO05D002751 6.9e-06 57.4 116 30.2
Mapoly0229s0008 Marchantia polymorpha HOM05D002537 ORTHO05D002751 6.9e-06 57.4 123 30.1
Zm00001eb421380 Zea mays HOM05D002537 ORTHO05D002751 6.9e-06 57.4 129 37.2
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 9.0e-06 57.0 304 22.0


User provided reference genes

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