Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 2.0e-73 279.3 171 100.0
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 6.6e-48 194.5 246 58.5
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 1.1e-42 177.2 248 57.3
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 1.4e-42 176.8 244 59.0
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 1.9e-42 176.4 247 58.7
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 2.1e-41 172.9 249 58.6
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 2.7e-41 172.6 244 58.2
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 6.0e-41 171.4 246 58.1
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 6.6e-40 167.9 249 56.2
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 7.3e-39 164.5 248 50.0
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 1.6e-38 163.3 249 49.8
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 3.6e-38 162.2 249 49.8
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 1.5e-36 156.8 249 49.8
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 2.2e-35 152.9 244 47.1
C09p41330 Brassica napus HOM05D005135 ORTHO05D005810 1.2e-33 147.1 186 61.8
BolC9t57008H Brassica oleracea HOM05D005135 ORTHO05D005810 1.2e-33 147.1 186 61.8
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 1.9e-31 139.8 240 45.4
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.9e-24 115.5 223 42.6
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.1e-23 114.0 225 48.9
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 1.5e-23 113.6 216 41.2
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 1.9e-23 113.2 229 49.8
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.5e-23 112.8 225 48.4
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.3e-23 112.1 225 48.4
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 4.3e-23 112.1 233 42.1
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 4.3e-23 112.1 228 41.2
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 7.4e-23 111.3 230 40.4
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.6e-22 110.2 230 37.8
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 3.7e-22 109.0 221 40.3
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 3.7e-22 109.0 151 51.0
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 3.7e-22 109.0 226 46.9
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 4.8e-22 108.6 232 40.9
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 4.8e-22 108.6 224 43.3
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 4.8e-22 108.6 218 40.8
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 6.2e-22 108.2 232 40.1
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 8.1e-22 107.8 221 42.1
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 8.1e-22 107.8 126 57.1
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 1.1e-21 107.5 232 40.5
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 1.4e-21 107.1 224 40.2
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 1.4e-21 107.1 216 41.7
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 1.8e-21 106.7 230 39.1
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 3.1e-21 105.9 219 47.9
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 3.1e-21 105.9 229 37.6
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 4.0e-21 105.5 226 42.0
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 4.0e-21 105.5 222 38.3
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 4.0e-21 105.5 225 47.6
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 4.0e-21 105.5 227 41.0
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 5.3e-21 105.1 230 39.1
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 5.3e-21 105.1 231 40.3
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 5.3e-21 105.1 216 39.8
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 6.9e-21 104.8 231 39.4
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 6.9e-21 104.8 224 39.3
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 6.9e-21 104.8 228 38.6
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 9.0e-21 104.4 224 38.8
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 9.0e-21 104.4 224 40.2
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 9.0e-21 104.4 229 39.3
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 1.2e-20 104.0 227 37.9
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 1.2e-20 104.0 228 39.5
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 1.5e-20 103.6 216 39.4
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 1.5e-20 103.6 217 49.3
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 1.5e-20 103.6 218 50.0
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 1.5e-20 103.6 127 52.8
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 2.0e-20 103.2 228 39.0
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 3.4e-20 102.4 224 39.7
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 3.4e-20 102.4 232 40.5
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 4.5e-20 102.1 206 40.3
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 4.5e-20 102.1 230 38.7
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 5.8e-20 101.7 133 53.4
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 5.8e-20 101.7 231 38.5
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 7.6e-20 101.3 217 41.5
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 7.6e-20 101.3 230 38.7
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 7.6e-20 101.3 225 48.0
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 1.0e-19 100.9 126 52.4
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 1.3e-19 100.5 232 40.5
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 1.3e-19 100.5 229 36.7
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 1.3e-19 100.5 231 37.7
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.3e-19 100.5 227 38.8
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 1.7e-19 100.1 224 42.4
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.2e-19 99.8 214 40.2
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.2e-19 99.8 230 37.8
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.2e-19 99.8 233 37.8
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 2.2e-19 99.8 226 39.8
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 2.9e-19 99.4 222 38.3
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 2.9e-19 99.4 209 41.1
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 2.9e-19 99.4 230 37.8
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 3.8e-19 99.0 233 37.8
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 6.5e-19 98.2 230 38.3
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 6.5e-19 98.2 128 52.3
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 6.5e-19 98.2 226 39.4
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 8.4e-19 97.8 227 37.9
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.1e-18 97.4 224 46.9
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 1.1e-18 97.4 219 38.4
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.9e-18 96.7 215 47.4
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 1.9e-18 96.7 217 38.2
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.5e-18 96.3 130 49.2
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 2.5e-18 96.3 154 48.1
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 3.2e-18 95.9 231 41.1
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 3.2e-18 95.9 215 35.8
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 3.2e-18 95.9 122 53.3
A10p09670 Brassica napus HOM05D005135 ORTHO05D005810 4.2e-18 95.5 87 79.3
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 4.2e-18 95.5 224 37.1
BraA10t43048Z Brassica rapa HOM05D005135 ORTHO05D005810 2.1e-17 93.2 87 79.3
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 2.7e-17 92.8 225 42.2
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 4.6e-17 92.0 230 37.0
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 4.6e-17 92.0 219 37.4
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 4.6e-17 92.0 219 37.4
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 6.0e-17 91.7 219 37.4
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 1.0e-16 90.9 230 36.1
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 1.8e-16 90.1 212 36.3
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 3.9e-16 89.0 227 35.2
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 5.1e-16 88.6 126 50.0
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 6.7e-16 88.2 227 36.6
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 1.1e-15 87.4 272 32.4
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 2.5e-15 86.3 230 35.7
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 2.5e-15 86.3 214 36.4
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 5.7e-15 85.1 230 36.5
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 7.4e-15 84.7 209 34.9
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 9.6e-15 84.3 230 35.2
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 2.1e-14 83.2 230 35.2
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 4.1e-13 79.0 145 42.8
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 6.9e-13 78.2 122 43.4
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 1.2e-12 77.4 122 45.1
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 1.3e-11 73.9 214 33.2
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 2.2e-11 73.2 134 40.3
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 6.5e-11 71.6 108 46.3
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 8.4e-11 71.2 180 36.7
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 4.6e-09 65.5 72 54.2
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 4.6e-09 65.5 72 55.6
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 6.1e-09 65.1 185 34.1
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 7.9e-09 64.7 151 39.7
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 7.9e-09 64.7 230 33.5
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 3.9e-08 62.4 172 35.5
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 5.1e-08 62.0 68 55.9
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 3.3e-07 59.3 183 33.9


User provided reference genes

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